assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002356195.1_ASM235619v1	NZ_AP017896	Actinomyces sp. Chiba101	1	65489-65601	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,WYL,DinG	Orphan	GCTCCGGCCCCGCAGGCCCCCGCCCC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,WYL,DinG	NA|290aa|up_9|NZ_AP017896.1_52398_53268_+,NA|212aa|up_2|NZ_AP017896.1_60646_61282_+,NA|251aa|up_0|NZ_AP017896.1_64069_64822_-,NA|757aa|down_1|NZ_AP017896.1_67259_69530_-	NA|290aa|up_9|NZ_AP017896.1_52398_53268_+	NA	NA|391aa|up_8|NZ_AP017896.1_53480_54653_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|588aa|up_7|NZ_AP017896.1_54718_56482_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|351aa|up_6|NZ_AP017896.1_56515_57568_-	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|237aa|up_5|NZ_AP017896.1_57722_58433_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|281aa|up_4|NZ_AP017896.1_58429_59272_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|297aa|up_3|NZ_AP017896.1_59423_60314_-	PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed	NA|212aa|up_2|NZ_AP017896.1_60646_61282_+	NA	NA|835aa|up_1|NZ_AP017896.1_61625_64130_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|251aa|up_0|NZ_AP017896.1_64069_64822_-	NA	NA|303aa|down_0|NZ_AP017896.1_66320_67229_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|757aa|down_1|NZ_AP017896.1_67259_69530_-	NA	NA|843aa|down_2|NZ_AP017896.1_69635_72164_-	pfam03595, SLAC1, Voltage-dependent anion channel	NA|312aa|down_3|NZ_AP017896.1_72474_73410_+	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|327aa|down_4|NZ_AP017896.1_73451_74432_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|316aa|down_5|NZ_AP017896.1_74461_75409_-	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	NA|426aa|down_6|NZ_AP017896.1_75737_77015_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|374aa|down_7|NZ_AP017896.1_77011_78133_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|502aa|down_8|NZ_AP017896.1_78159_79665_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|452aa|down_9|NZ_AP017896.1_79780_81136_+	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
GCF_002356195.1_ASM235619v1	NZ_AP017896	Actinomyces sp. Chiba101	2	492909-493151	2	CRISPRCasFinder	no	cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,WYL,DinG	Unclear	CGCCTCGACGCCGCCCTCGCCGAG	24	0	0	NA	NA	NA	3	3	Unclear	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,WYL,DinG	NA,NA|269aa|down_4|NZ_AP017896.1_498416_499223_+	NA|220aa|up_9|NZ_AP017896.1_483512_484172_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|274aa|up_8|NZ_AP017896.1_484243_485065_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|339aa|up_7|NZ_AP017896.1_485061_486078_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|242aa|up_6|NZ_AP017896.1_486170_486896_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|144aa|up_5|NZ_AP017896.1_487010_487442_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|143aa|up_4|NZ_AP017896.1_487568_487997_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|160aa|up_3|NZ_AP017896.1_488035_488515_+	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]	NA|238aa|up_2|NZ_AP017896.1_489048_489762_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|175aa|up_1|NZ_AP017896.1_489999_490524_+	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|464aa|up_0|NZ_AP017896.1_490599_491991_+	pfam02447, GntP_permease, GntP family permease	NA|569aa|down_0|NZ_AP017896.1_493551_495258_+	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|338aa|down_1|NZ_AP017896.1_495459_496473_-	pfam01384, PHO4, Phosphate transporter family	NA|207aa|down_2|NZ_AP017896.1_496488_497109_-	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|224aa|down_3|NZ_AP017896.1_497534_498206_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|269aa|down_4|NZ_AP017896.1_498416_499223_+	NA	NA|370aa|down_5|NZ_AP017896.1_499295_500405_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|235aa|down_6|NZ_AP017896.1_500826_501531_+	pfam08768, DUF1794, Domain of unknown function (DUF1794)	NA|433aa|down_7|NZ_AP017896.1_501530_502829_+	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only]	NA|146aa|down_8|NZ_AP017896.1_502907_503345_+	pfam10724, DUF2516, Protein of unknown function (DUF2516)	NA|142aa|down_9|NZ_AP017896.1_503344_503770_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional
GCF_002356195.1_ASM235619v1	NZ_AP017896	Actinomyces sp. Chiba101	3	602750-602855	3	CRISPRCasFinder	no	csa3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,WYL,DinG	Type I-A	CCTACCGTCTCGGCCCGGCCTTGCGCCCTC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,WYL,DinG	NA,NA|322aa|down_6|NZ_AP017896.1_611653_612619_+	NA|423aa|up_9|NZ_AP017896.1_589215_590484_-	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|484aa|up_8|NZ_AP017896.1_590763_592215_-	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]	NA|441aa|up_7|NZ_AP017896.1_592375_593698_-	cd17337, MFS_CsbX, CsbX family of the Major Facilitator Superfamily of transporters	NA|281aa|up_6|NZ_AP017896.1_594028_594871_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|217aa|up_5|NZ_AP017896.1_595047_595698_-	COG1556, COG1556, Uncharacterized conserved protein [Function unknown]	NA|518aa|up_4|NZ_AP017896.1_595697_597251_-	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|266aa|up_3|NZ_AP017896.1_597247_598045_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|565aa|up_2|NZ_AP017896.1_598392_600087_-	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|654aa|up_1|NZ_AP017896.1_600338_602300_-	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	csa3|115aa|up_0|NZ_AP017896.1_602292_602637_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|509aa|down_0|NZ_AP017896.1_603007_604534_-	PRK00047, glpK, glycerol kinase GlpK	NA|255aa|down_1|NZ_AP017896.1_604610_605375_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|591aa|down_2|NZ_AP017896.1_605472_607245_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|361aa|down_3|NZ_AP017896.1_607483_608566_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|696aa|down_4|NZ_AP017896.1_608675_610763_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|153aa|down_5|NZ_AP017896.1_611104_611563_+	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|322aa|down_6|NZ_AP017896.1_611653_612619_+	NA	NA|298aa|down_7|NZ_AP017896.1_612691_613585_+	cd07531, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Bacillus AraL phosphatase, a putative sugar phosphatase	NA|521aa|down_8|NZ_AP017896.1_613669_615232_+	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases	NA|463aa|down_9|NZ_AP017896.1_615264_616653_+	cd08175, G1PDH, Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner
GCF_002356195.1_ASM235619v1	NZ_AP017896	Actinomyces sp. Chiba101	4	945877-950665	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,WYL,DinG	Type I-E	GGATCATCCCCGCATACGCGGGGTGCAC,GGATCATCCCCGCATACGCGGGGTGCAC,GGATCATCCCCGCATACGCGGGGTGCAC	28,28,28	0	0	NA	NA	NA:NA:NA	78,78,59	78	TypeI-E	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,WYL,DinG	NA,NA	NA|719aa|up_9|NZ_AP017896.1_928029_930186_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|557aa|up_8|NZ_AP017896.1_930374_932045_-	PRK14705, PRK14705, glycogen branching enzyme; Provisional	NA|648aa|up_7|NZ_AP017896.1_932041_933985_-	TIGR02456, Trehalose_synthase, trehalose synthase	NA|685aa|up_6|NZ_AP017896.1_933981_936036_-	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|382aa|up_5|NZ_AP017896.1_936151_937297_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|461aa|up_4|NZ_AP017896.1_937363_938746_-	pfam08447, PAS_3, PAS fold	NA|793aa|up_3|NZ_AP017896.1_938904_941283_-	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|254aa|up_2|NZ_AP017896.1_941394_942156_+	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|329aa|up_1|NZ_AP017896.1_942248_943235_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|386aa|up_0|NZ_AP017896.1_944032_945190_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	cas2|131aa|down_0|NZ_AP017896.1_950721_951114_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|316aa|down_1|NZ_AP017896.1_951107_952055_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|230aa|down_2|NZ_AP017896.1_952057_952747_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|238aa|down_3|NZ_AP017896.1_952737_953451_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|377aa|down_4|NZ_AP017896.1_953450_954581_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|235aa|down_5|NZ_AP017896.1_954582_955287_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|553aa|down_6|NZ_AP017896.1_955283_956942_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|988aa|down_7|NZ_AP017896.1_956938_959902_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|95aa|down_8|NZ_AP017896.1_960317_960602_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|452aa|down_9|NZ_AP017896.1_960625_961981_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_002356195.1_ASM235619v1	NZ_AP017896	Actinomyces sp. Chiba101	5	1593081-1593152	5	CRISPRCasFinder	no	csa3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,WYL,DinG	Type I-A	TGCGAGGACTGCTCCTGCCCCACCTGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,WYL,DinG	NA,NA|603aa|down_4|NZ_AP017896.1_1603293_1605102_-,NA|193aa|down_8|NZ_AP017896.1_1608177_1608756_-	NA|325aa|up_9|NZ_AP017896.1_1580673_1581648_-	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|407aa|up_8|NZ_AP017896.1_1581699_1582920_-	pfam02618, YceG, YceG-like family	NA|159aa|up_7|NZ_AP017896.1_1582916_1583393_-	pfam03652, RuvX, Holliday junction resolvase	NA|905aa|up_6|NZ_AP017896.1_1583407_1586122_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|208aa|up_5|NZ_AP017896.1_1586337_1586961_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|261aa|up_4|NZ_AP017896.1_1587174_1587957_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|462aa|up_3|NZ_AP017896.1_1587953_1589339_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|819aa|up_2|NZ_AP017896.1_1589413_1591870_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|206aa|up_1|NZ_AP017896.1_1591846_1592464_-	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase	csa3|105aa|up_0|NZ_AP017896.1_1592581_1592896_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|592aa|down_0|NZ_AP017896.1_1593304_1595080_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|782aa|down_1|NZ_AP017896.1_1595995_1598341_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|837aa|down_2|NZ_AP017896.1_1598980_1601491_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|560aa|down_3|NZ_AP017896.1_1601617_1603297_-	cd11383, YfjP, YfjP GTPase	NA|603aa|down_4|NZ_AP017896.1_1603293_1605102_-	NA	NA|468aa|down_5|NZ_AP017896.1_1605110_1606514_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|276aa|down_6|NZ_AP017896.1_1606548_1607376_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|222aa|down_7|NZ_AP017896.1_1607490_1608156_-	pfam08808, RES, RES domain	NA|193aa|down_8|NZ_AP017896.1_1608177_1608756_-	NA	NA|523aa|down_9|NZ_AP017896.1_1609152_1610721_+	pfam03993, DUF349, Domain of Unknown Function (DUF349)
