The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP018034	Mycobacterium tuberculosis strain HN-205	4411033	2929556	2967828	4411033	head,terminase,protease,integrase,capsid,tRNA	Mycobacterium_phage(30.0%)	47	2958357:2958384	2967981:2968008
WP_003413486.1|2929556_2931635_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2931743_2931971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009940032.1|2931967_2933353_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2933697_2934198_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2934214_2934655_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2934801_2935479_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2935463_2935817_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2935829_2936255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2936251_2936926_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2937003_2937825_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2937960_2938854_+	universal stress protein TB31.7	NA	NA	NA	NA	NA
WP_003413594.1|2938856_2939675_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2939689_2940871_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2940929_2941361_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2941874_2943116_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2943425_2943788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2944134_2945259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2945260_2945800_+	archease	NA	NA	NA	NA	NA
WP_003413616.1|2945939_2947238_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2947276_2947558_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2947702_2948188_-	non-heme di-iron catalase	NA	NA	NA	NA	NA
WP_003908019.1|2948214_2948469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2948472_2950809_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2950837_2951080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2951080_2951758_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2951953_2952610_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2952772_2953219_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2953393_2953726_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2953845_2954205_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2954306_2954765_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2954900_2955281_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2955277_2956774_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|2957008_2957200_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
2958357:2958384	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2958490_2958922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2958918_2959917_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2959930_2960395_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003908028.1|2960382_2960634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003901443.1|2960804_2962244_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2962251_2962785_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2962937_2963564_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2963595_2963919_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2963998_2964244_-	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003899416.1|2964240_2965668_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2965669_2966062_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2966058_2966319_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2966335_2966698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2966700_2967828_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2967981:2968008	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_AP018034	Mycobacterium tuberculosis strain HN-205	4411033	3701837	3750330	4411033	transposase,tRNA,protease	Burkholderia_virus(25.0%)	23	NA	NA
WP_087902221.1|3701837_3703099_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3703392_3703554_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3703575_3705105_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3705037_3705976_-	sigma-70 family RNA polymerase sigma factor SigJ	NA	NA	NA	NA	NA
WP_003902446.1|3705984_3707352_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3707420_3708638_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3708733_3710242_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3710238_3711390_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3711580_3712426_-|protease	PDZ-interacting protease regulator Ppr1	protease	NA	NA	NA	NA
WP_003900026.1|3712900_3713341_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3713374_3714244_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3714264_3715275_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003905041.1|3715547_3716192_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3716258_3717488_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3717770_3719120_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3719131_3720271_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3720267_3720999_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_096474199.1|3721007_3732077_-	PPE family protein	NA	NA	NA	NA	NA
WP_031654342.1|3732125_3733106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417619.1|3738494_3738752_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003901612.1|3739007_3748481_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3749106_3749553_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003911006.1|3749589_3750330_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_AP018034	Mycobacterium tuberculosis strain HN-205	4411033	4301030	4369726	4411033	transposase,tRNA,protease	Mycobacterium_phage(50.0%)	60	NA	NA
WP_003899714.1|4301030_4302254_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_003420870.1|4302253_4302835_-|transposase	IS607-like element IS1537 family transposase	transposase	NA	NA	NA	NA
WP_003420879.1|4305226_4305709_+	DUF2834 domain-containing protein	NA	NA	NA	NA	NA
WP_003420880.1|4305705_4306281_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003420884.1|4306336_4307128_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003420889.1|4307124_4308384_-|tRNA	serine--tRNA ligase	tRNA	A0A2I2L4X3	Orpheovirus	33.8	7.7e-56
WP_003906228.1|4308516_4309866_+	septum formation family protein	NA	NA	NA	NA	NA
WP_003899719.1|4309870_4310284_+	metallopeptidase family protein	NA	NA	NA	NA	NA
WP_003912385.1|4310280_4310502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003906229.1|4310478_4311177_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_003420906.1|4311173_4312139_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_003420910.1|4312234_4313011_+	DUF2470 domain-containing protein	NA	NA	NA	NA	NA
WP_003420914.1|4313036_4313450_+	LCP family protein	NA	NA	NA	NA	NA
WP_003420920.1|4313647_4314193_+	ferritin BfrB	NA	NA	NA	NA	NA
WP_003901745.1|4314207_4315032_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_003899726.1|4315037_4316066_-	DUF4328 domain-containing protein	NA	NA	NA	NA	NA
WP_003420934.1|4316604_4316754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049961743.1|4318289_4318736_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_096474225.1|4318750_4319110_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003399671.1|4319723_4319888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003399735.1|4320173_4320797_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	41.1	1.2e-33
WP_003911040.1|4321076_4321634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003399745.1|4321794_4322703_+	TMEM165/GDT1 family protein	NA	NA	NA	NA	NA
WP_003399759.1|4322967_4323366_+	type VII secretion system ESX-1 transcriptional regulator EspR	NA	NA	NA	NA	NA
WP_003399771.1|4323483_4324140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003399775.1|4324151_4324436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003399779.1|4324542_4324947_+	histone-like protein Hns	NA	NA	NA	NA	NA
WP_003399786.1|4324963_4325437_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA	NA
WP_003899731.1|4325472_4326942_-	FAD-containing monooxygenase EthA	NA	NA	NA	NA	NA
WP_003399797.1|4327017_4327668_+	HTH-type transcriptional regulator EthR	NA	NA	NA	NA	NA
WP_003399801.1|4327869_4328877_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003399803.1|4328885_4329083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899732.1|4329507_4330974_-	glutamate synthase subunit beta	NA	NA	NA	NA	NA
WP_003899733.1|4330966_4335550_-	glutamate synthase large subunit	NA	NA	NA	NA	NA
WP_003399818.1|4336245_4337418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902567.1|4337414_4337741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899734.1|4337639_4337990_-	transcriptional regulator WhiB6	NA	NA	NA	NA	NA
WP_003899735.1|4338316_4339495_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003899736.1|4339737_4340946_+	type VII secretion system ESX-1 associated protein EspE	NA	NA	NA	NA	NA
WP_003899737.1|4341033_4341345_+	type VII secretion system ESX-1 associated protein EspF	NA	NA	NA	NA	NA
WP_003399839.1|4341347_4342199_+	type VII secretion system ESX-1 adaptor EspG1	NA	NA	NA	NA	NA
WP_003399844.1|4342237_4342789_+	type VII secretion system ESX-1 associated protein EspH	NA	NA	NA	NA	NA
WP_003399850.1|4342781_4344503_+	type VII secretion system ESX-1 AAA family ATPase EccA1	NA	V5UQM2	Mycobacterium_phage	33.2	8.6e-58
WP_003399854.1|4344506_4345949_+	type VII secretion system ESX-1 subunit EccB1	NA	NA	NA	NA	NA
WP_003899738.1|4345948_4348192_+	type VII secretion system ESX-1 FtsK/SpoIIIE family ATPase EccCa1	NA	A0A142F150	Bacillus_phage	28.6	7.6e-14
WP_003399865.1|4348347_4350123_+	type VII secretion system ESX-1 FtsK/SpoIIIE family ATPase EccCb1	NA	A0A1P8DJB2	Virus_Rctr71	26.7	1.4e-07
WP_003399870.1|4350265_4350562_+	type VII secretion system ESX-1 target PE35	NA	NA	NA	NA	NA
WP_003399879.1|4350595_4351702_+	type VII secretion system ESX-1 target PPE68	NA	NA	NA	NA	NA
WP_003399940.1|4351794_4352097_+	type VII secretion system ESX-1 WXG100 family target CFP-10	NA	NA	NA	NA	NA
WP_003399963.1|4352129_4352417_+	type VII secretion system ESX-1 WXG100 family target ESAT-6	NA	A0A2I6AZH7	Macacine_betaherpesvirus	100.0	1.4e-45
WP_003909105.1|4352530_4354531_+	type VII secretion system ESX-1 associated protein EspI	NA	V5UPR8	Mycobacterium_phage	28.8	4.4e-21
WP_003399976.1|4354527_4356063_+	type VII secretion system ESX-1 subunit EccD1	NA	NA	NA	NA	NA
WP_003901751.1|4356213_4357056_+	type VII secretion system ESX-1 associated protein EspJ	NA	NA	NA	NA	NA
WP_024753676.1|4357113_4359339_-	type VII secretion system ESX-1 associated protein EspK	NA	NA	NA	NA	NA
WP_003399988.1|4359755_4360103_-	type VII secretion system ESX-1 associated protein EspL	NA	NA	NA	NA	NA
WP_003399995.1|4360099_4361482_-	type VII secretion system ESX-1 target EspB	NA	NA	NA	NA	NA
WP_003400000.1|4361588_4362977_-	type VII secretion system ESX-1 subunit EccE1	NA	NA	NA	NA	NA
WP_003400004.1|4362973_4364314_-|protease	type VII secretion system ESX-1 serine protease mycosin MycP1	protease	V5UPA7	Mycobacterium_phage	41.0	1.4e-79
WP_003400005.1|4364535_4366395_-	type VII secretion system ESX-2 AAA family ATPase EccA2	NA	V5UQM2	Mycobacterium_phage	29.3	2.5e-47
WP_003400012.1|4368073_4369726_-|protease	type VII secretion system ESX-2 serine protease mycosin MycP2	protease	V5UPA7	Mycobacterium_phage	36.6	1.1e-67
