assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002381265.1_ASM238126v1	NZ_CP023483	Brochothrix thermosphacta strain BI chromosome, complete genome	1	57167-57263	1	CRISPRCasFinder	no	DEDDh	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Unclear	GAATTCATTCGCTTTACGAGAGTA	24	1	1	57191-57239	NZ_CP023483.1_163931-163883	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA|59aa|up_4|NZ_CP023483.1_52204_52381_-,NA	NA|188aa|up_9|NZ_CP023483.1_47066_47630_-	TIGR00636, PduO_Nterm, ATP:cob(I)alamin adenosyltransferase	NA|148aa|up_8|NZ_CP023483.1_47626_48070_-	pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation	NA|479aa|up_7|NZ_CP023483.1_48314_49751_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|494aa|up_6|NZ_CP023483.1_49775_51257_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|242aa|up_5|NZ_CP023483.1_51466_52192_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|59aa|up_4|NZ_CP023483.1_52204_52381_-	NA	NA|221aa|up_3|NZ_CP023483.1_52397_53060_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|342aa|up_2|NZ_CP023483.1_53340_54366_+	PRK01889, PRK01889, GTPase RsgA; Reviewed	NA|288aa|up_1|NZ_CP023483.1_54461_55325_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|369aa|up_0|NZ_CP023483.1_55461_56568_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|492aa|down_0|NZ_CP023483.1_57317_58793_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|568aa|down_1|NZ_CP023483.1_58785_60489_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|206aa|down_2|NZ_CP023483.1_60490_61108_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|490aa|down_3|NZ_CP023483.1_61245_62715_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|306aa|down_4|NZ_CP023483.1_62734_63652_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|down_5|NZ_CP023483.1_63672_64554_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|735aa|down_6|NZ_CP023483.1_64811_67016_-	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|358aa|down_7|NZ_CP023483.1_67019_68093_-	cd06267, PBP1_LacI_sugar_binding-like, ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily	NA|430aa|down_8|NZ_CP023483.1_68310_69600_+	COG3538, COG3538, Uncharacterized conserved protein [Function unknown]	NA|902aa|down_9|NZ_CP023483.1_69624_72330_+	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]
GCF_002381265.1_ASM238126v1	NZ_CP023483	Brochothrix thermosphacta strain BI chromosome, complete genome	2	334101-334221	2	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Orphan	TCCTCATGTTAGATGCTTTAAGAGTACGATTCC	33	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA|175aa|up_9|NZ_CP023483.1_325967_326492_+,NA	NA|175aa|up_9|NZ_CP023483.1_325967_326492_+	NA	NA|164aa|up_8|NZ_CP023483.1_326675_327167_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|141aa|up_7|NZ_CP023483.1_327316_327739_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|170aa|up_6|NZ_CP023483.1_327817_328327_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|203aa|up_5|NZ_CP023483.1_328453_329062_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|270aa|up_4|NZ_CP023483.1_329064_329874_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|156aa|up_3|NZ_CP023483.1_330086_330554_+	pfam10702, DUF2507, Protein of unknown function (DUF2507)	NA|257aa|up_2|NZ_CP023483.1_330540_331311_-	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|70aa|up_1|NZ_CP023483.1_331827_332037_+	pfam07288, DUF1447, Protein of unknown function (DUF1447)	NA|559aa|up_0|NZ_CP023483.1_332043_333720_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|226aa|down_0|NZ_CP023483.1_334395_335073_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|211aa|down_1|NZ_CP023483.1_335087_335720_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|353aa|down_2|NZ_CP023483.1_335712_336771_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|240aa|down_3|NZ_CP023483.1_336767_337487_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|309aa|down_4|NZ_CP023483.1_337586_338513_-	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|104aa|down_5|NZ_CP023483.1_338710_339022_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|213aa|down_6|NZ_CP023483.1_339080_339719_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|265aa|down_7|NZ_CP023483.1_339721_340516_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|284aa|down_8|NZ_CP023483.1_340993_341845_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|469aa|down_9|NZ_CP023483.1_341872_343279_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed
GCF_002381265.1_ASM238126v1	NZ_CP023483	Brochothrix thermosphacta strain BI chromosome, complete genome	3	563064-563183	3	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Orphan	TCATCGTTGCAAATTTATTTGCTTACGAGGATAGTATGGG	40	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA|329aa|up_0|NZ_CP023483.1_562070_563057_+,NA|183aa|down_0|NZ_CP023483.1_563452_564001_-	NA|235aa|up_9|NZ_CP023483.1_551576_552281_-	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|152aa|up_8|NZ_CP023483.1_552274_552730_-	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|389aa|up_7|NZ_CP023483.1_552799_553966_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|404aa|up_6|NZ_CP023483.1_554217_555429_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|388aa|up_5|NZ_CP023483.1_555794_556958_-	PRK02936, argD, acetylornithine transaminase	NA|250aa|up_4|NZ_CP023483.1_556958_557708_-	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|401aa|up_3|NZ_CP023483.1_557722_558925_-	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|342aa|up_2|NZ_CP023483.1_558940_559966_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|591aa|up_1|NZ_CP023483.1_560125_561898_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|329aa|up_0|NZ_CP023483.1_562070_563057_+	NA	NA|183aa|down_0|NZ_CP023483.1_563452_564001_-	NA	NA|156aa|down_1|NZ_CP023483.1_564019_564487_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|106aa|down_2|NZ_CP023483.1_564783_565101_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|785aa|down_3|NZ_CP023483.1_565222_567577_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|176aa|down_4|NZ_CP023483.1_567601_568129_-	pfam02674, Colicin_V, Colicin V production protein	NA|201aa|down_5|NZ_CP023483.1_568346_568949_+	cd02140, Frm2-like, nitroreductase family protein	NA|803aa|down_6|NZ_CP023483.1_569024_571433_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|348aa|down_7|NZ_CP023483.1_571445_572489_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|114aa|down_8|NZ_CP023483.1_572814_573156_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|155aa|down_9|NZ_CP023483.1_573250_573715_-	COG0756, Dut, dUTPase [Nucleotide transport and metabolism]
GCF_002381265.1_ASM238126v1	NZ_CP023483	Brochothrix thermosphacta strain BI chromosome, complete genome	4	1946089-1946198	4	CRISPRCasFinder	no	cas3	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Unclear	AACGGCGGTTCACGTCGTAGCTCAGG	26	0	0	NA	NA	NA	1	1	Unclear	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA,NA	NA|266aa|up_9|NZ_CP023483.1_1933683_1934481_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|260aa|up_8|NZ_CP023483.1_1934635_1935415_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|641aa|up_7|NZ_CP023483.1_1935389_1937312_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|226aa|up_6|NZ_CP023483.1_1937326_1938004_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|349aa|up_5|NZ_CP023483.1_1938020_1939067_+	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ	NA|363aa|up_4|NZ_CP023483.1_1939120_1940209_-	cd08172, GlyDH-like, Glycerol_dehydrogenase-like	NA|302aa|up_3|NZ_CP023483.1_1940210_1941116_-	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	cas3|375aa|up_2|NZ_CP023483.1_1941366_1942491_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|78aa|up_1|NZ_CP023483.1_1942505_1942739_+	pfam12725, DUF3810, Protein of unknown function (DUF3810)	NA|454aa|up_0|NZ_CP023483.1_1942785_1944147_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|136aa|down_0|NZ_CP023483.1_1946578_1946986_+	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|486aa|down_1|NZ_CP023483.1_1946978_1948436_+	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|118aa|down_2|NZ_CP023483.1_1948519_1948873_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|372aa|down_3|NZ_CP023483.1_1948877_1949993_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|116aa|down_4|NZ_CP023483.1_1950089_1950437_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|140aa|down_5|NZ_CP023483.1_1950557_1950977_+	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|322aa|down_6|NZ_CP023483.1_1951018_1951984_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|115aa|down_7|NZ_CP023483.1_1952002_1952347_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|149aa|down_8|NZ_CP023483.1_1952336_1952783_+	PRK04069, PRK04069, serine-protein kinase RsbW; Provisional	NA|262aa|down_9|NZ_CP023483.1_1952796_1953582_+	PRK08583, PRK08583, RNA polymerase sigma factor SigB; Validated
GCF_002381265.1_ASM238126v1	NZ_CP023483	Brochothrix thermosphacta strain BI chromosome, complete genome	5	1995309-1995396	5	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Orphan	AGCTTACGAGAATAGTATGGGACG	24	1	5	1995333-1995372|1995333-1995372|1995333-1995372|1995333-1995372|1995333-1995372	NZ_CP023483.1_97358-97397|NZ_CP023483.1_97422-97461|NZ_CP023483.1_2163604-2163643|NZ_CP023483.1_2423551-2423590|NZ_CP023483.1_1542187-1542148	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA|32aa|up_1|NZ_CP023483.1_1993272_1993368_-,NA|197aa|down_1|NZ_CP023483.1_1997490_1998081_+	NA|451aa|up_9|NZ_CP023483.1_1984431_1985784_+	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|79aa|up_8|NZ_CP023483.1_1985776_1986013_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|294aa|up_7|NZ_CP023483.1_1986009_1986891_+	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase	NA|596aa|up_6|NZ_CP023483.1_1986916_1988704_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|275aa|up_5|NZ_CP023483.1_1988717_1989542_+	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|150aa|up_4|NZ_CP023483.1_1989790_1990240_+	PRK04280, PRK04280, transcriptional regulator ArgR	NA|561aa|up_3|NZ_CP023483.1_1990270_1991953_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|367aa|up_2|NZ_CP023483.1_1992097_1993198_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|32aa|up_1|NZ_CP023483.1_1993272_1993368_-	NA	NA|472aa|up_0|NZ_CP023483.1_1993626_1995042_+	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|430aa|down_0|NZ_CP023483.1_1996108_1997398_+	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|197aa|down_1|NZ_CP023483.1_1997490_1998081_+	NA	NA|380aa|down_2|NZ_CP023483.1_1998291_1999431_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|349aa|down_3|NZ_CP023483.1_1999950_2000997_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|190aa|down_4|NZ_CP023483.1_2001011_2001581_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|613aa|down_5|NZ_CP023483.1_2001632_2003471_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|316aa|down_6|NZ_CP023483.1_2003597_2004545_+	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	NA|314aa|down_7|NZ_CP023483.1_2005203_2006145_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|249aa|down_8|NZ_CP023483.1_2006146_2006893_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|58aa|down_9|NZ_CP023483.1_2007054_2007228_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed
GCF_002381265.1_ASM238126v1	NZ_CP023483	Brochothrix thermosphacta strain BI chromosome, complete genome	6	2028321-2028431	6	CRISPRCasFinder	no	WYL	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Unclear	CCCATACTGTTTTCGTAAGCGAATAAATTCGCAACGAT	38	1	1	2028359-2028393	NZ_CP023483.1_2028240-2028274	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA,NA	NA|148aa|up_9|NZ_CP023483.1_2019150_2019594_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|298aa|up_8|NZ_CP023483.1_2019783_2020677_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|272aa|up_7|NZ_CP023483.1_2020705_2021521_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|437aa|up_6|NZ_CP023483.1_2021543_2022854_+	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|245aa|up_5|NZ_CP023483.1_2022868_2023603_+	PRK00104, scpA, segregation and condensation protein A; Reviewed	NA|209aa|up_4|NZ_CP023483.1_2023602_2024229_+	PRK00135, scpB, segregation and condensation protein B; Reviewed	NA|243aa|up_3|NZ_CP023483.1_2024200_2024929_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|217aa|up_2|NZ_CP023483.1_2025024_2025675_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|604aa|up_1|NZ_CP023483.1_2025753_2027565_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|173aa|up_0|NZ_CP023483.1_2027569_2028088_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|191aa|down_0|NZ_CP023483.1_2028776_2029349_+	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|83aa|down_1|NZ_CP023483.1_2029363_2029612_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	WYL|300aa|down_2|NZ_CP023483.1_2029670_2030570_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|126aa|down_3|NZ_CP023483.1_2030626_2031004_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|343aa|down_4|NZ_CP023483.1_2031138_2032167_+	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown]	NA|477aa|down_5|NZ_CP023483.1_2032171_2033602_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|235aa|down_6|NZ_CP023483.1_2033703_2034408_+	pfam01476, LysM, LysM domain	NA|228aa|down_7|NZ_CP023483.1_2034543_2035227_+	PRK00023, cmk, (d)CMP kinase	NA|394aa|down_8|NZ_CP023483.1_2035316_2036498_+	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	NA|437aa|down_9|NZ_CP023483.1_2036609_2037920_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed
GCF_002381265.1_ASM238126v1	NZ_CP023483	Brochothrix thermosphacta strain BI chromosome, complete genome	7	2434335-2434450	7	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Orphan	TGTCTATTTAGAACTTAAATTTCAGGTCT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA,NA	NA|203aa|up_9|NZ_CP023483.1_2422444_2423053_+	cd07995, TPK, Thiamine pyrophosphokinase	NA|546aa|up_8|NZ_CP023483.1_2424304_2425942_+	cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog	NA|63aa|up_7|NZ_CP023483.1_2426106_2426295_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|121aa|up_6|NZ_CP023483.1_2426560_2426923_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|539aa|up_5|NZ_CP023483.1_2426995_2428612_+	TIGR03599, YloV, DAK2 domain fusion protein YloV	NA|687aa|up_4|NZ_CP023483.1_2428684_2430745_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|192aa|up_3|NZ_CP023483.1_2430848_2431424_+	PRK04424, PRK04424, transcription factor FapR	NA|337aa|up_2|NZ_CP023483.1_2431453_2432464_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|312aa|up_1|NZ_CP023483.1_2432456_2433392_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|249aa|up_0|NZ_CP023483.1_2433392_2434139_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|79aa|down_0|NZ_CP023483.1_2434886_2435123_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|234aa|down_1|NZ_CP023483.1_2435208_2435910_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1188aa|down_2|NZ_CP023483.1_2435926_2439490_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|331aa|down_3|NZ_CP023483.1_2439514_2440507_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|312aa|down_4|NZ_CP023483.1_2440854_2441790_+	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA	NA|263aa|down_5|NZ_CP023483.1_2441776_2442565_+	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|233aa|down_6|NZ_CP023483.1_2442648_2443347_+	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|409aa|down_7|NZ_CP023483.1_2443527_2444754_+	cd06174, MFS, Major Facilitator Superfamily	NA|89aa|down_8|NZ_CP023483.1_2444753_2445020_+	pfam09860, DUF2087, Uncharacterized protein conserved in bacteria (DUF2087)	NA|213aa|down_9|NZ_CP023483.1_2445287_2445926_-	COG2364, COG2364, Predicted membrane protein [Function unknown]
GCF_002381265.1_ASM238126v1	NZ_CP023483	Brochothrix thermosphacta strain BI chromosome, complete genome	8	2590004-2591689	8,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	DEDDh,csn2,cas2,cas1,cas9	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Type II-C,Type II-A,Type II-B	GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC,GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC,GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC,GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	36,36,36,36	5	6	2590238-2590267|2590304-2590333|2590568-2590597|2590568-2590597|2590832-2590861|2591492-2591521	NZ_CP023483.1_498864-498893|NZ_CP023483.1_190392-190363|NZ_CP023483.1_495074-495103|NZ_CP023483.1_189564-189593|NZ_CP023483.1_505993-505964|NZ_CP023483.1_505993-505964	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	25,25,24,24	25	TypeII-C,TypeII-A,TypeII-B	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA|126aa|up_7|NZ_CP023483.1_2582148_2582526_-,NA|72aa|up_3|NZ_CP023483.1_2586655_2586871_-,NA|266aa|up_1|NZ_CP023483.1_2587375_2588173_+,NA|124aa|down_5|NZ_CP023483.1_2600707_2601079_-	NA|190aa|up_9|NZ_CP023483.1_2576527_2577097_-	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	DEDDh|1440aa|up_8|NZ_CP023483.1_2577438_2581758_-	PRK00448, polC, DNA polymerase III PolC; Validated	NA|126aa|up_7|NZ_CP023483.1_2582148_2582526_-	NA	NA|544aa|up_6|NZ_CP023483.1_2582662_2584294_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|488aa|up_5|NZ_CP023483.1_2584674_2586138_+	cd16390, ParB_N_Srx_like, uncharacterized family distantly related to the N-terminal domain of the ParB/Srx superfamily	NA|146aa|up_4|NZ_CP023483.1_2586203_2586641_-	PRK10514, PRK10514, putative acetyltransferase; Provisional	NA|72aa|up_3|NZ_CP023483.1_2586655_2586871_-	NA	NA|121aa|up_2|NZ_CP023483.1_2587032_2587395_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|266aa|up_1|NZ_CP023483.1_2587375_2588173_+	NA	NA|540aa|up_0|NZ_CP023483.1_2588234_2589854_-	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	csn2|228aa|down_0|NZ_CP023483.1_2591747_2592431_-	TIGR01866, CRISPR-associated_Csn2_family_protein, CRISPR type II-A/NMEMI-associated protein Csn2	cas2|110aa|down_1|NZ_CP023483.1_2592427_2592757_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|291aa|down_2|NZ_CP023483.1_2592768_2593641_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1340aa|down_3|NZ_CP023483.1_2593656_2597676_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|731aa|down_4|NZ_CP023483.1_2598244_2600437_-	pfam10593, Z1, Z1 domain	NA|124aa|down_5|NZ_CP023483.1_2600707_2601079_-	NA	NA|434aa|down_6|NZ_CP023483.1_2601628_2602930_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|567aa|down_7|NZ_CP023483.1_2603191_2604892_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|423aa|down_8|NZ_CP023483.1_2604913_2606182_-	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP	NA|380aa|down_9|NZ_CP023483.1_2606198_2607338_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
