assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002386185.1_ASM238618v1	NZ_CP023497	Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome	1	742445-743798	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas9	DEDDh,csa3,WYL,cas2,cas1,cas9,RT,cas3,DinG	 Type II-B,Type II-C,Type II-A, or Type II-C?,Type II-B	GAATCACTCATACCTAAAATTACAGAGTACTAAAAC,GAATCACTCATACCTAAAATTACAGAGTACTAAAAC,GAATCACTCATACCTAAAATTACAGAGTACTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	20,19,10	20	TypeII-B,TypeII-C,TypeII-A,orTypeII-C?,TypeII-B	DEDDh,csa3,WYL,cas2,cas1,cas9,RT,cas3,DinG,casR	NA|60aa|up_9|NZ_CP023497.1_731920_732100_+,NA|330aa|down_0|NZ_CP023497.1_743828_744818_-,NA|146aa|down_4|NZ_CP023497.1_749479_749917_-	NA|60aa|up_9|NZ_CP023497.1_731920_732100_+	NA	NA|499aa|up_8|NZ_CP023497.1_732166_733663_-	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|410aa|up_7|NZ_CP023497.1_733887_735117_-	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|253aa|up_6|NZ_CP023497.1_735120_735879_-	PRK05406, PRK05406, 5-oxoprolinase subunit PxpA	NA|455aa|up_5|NZ_CP023497.1_735875_737240_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|148aa|up_4|NZ_CP023497.1_737257_737701_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|336aa|up_3|NZ_CP023497.1_737703_738711_-	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|244aa|up_2|NZ_CP023497.1_738700_739432_-	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|353aa|up_1|NZ_CP023497.1_739937_740996_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|363aa|up_0|NZ_CP023497.1_741250_742339_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|330aa|down_0|NZ_CP023497.1_743828_744818_-	NA	cas2|103aa|down_1|NZ_CP023497.1_744828_745137_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP023497.1_745148_746054_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1054aa|down_3|NZ_CP023497.1_746061_749223_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|146aa|down_4|NZ_CP023497.1_749479_749917_-	NA	NA|449aa|down_5|NZ_CP023497.1_750261_751608_+	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown]	NA|600aa|down_6|NZ_CP023497.1_751745_753545_-	PRK10150, PRK10150, beta-D-glucuronidase; Provisional	NA|281aa|down_7|NZ_CP023497.1_753565_754408_-	PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional	NA|349aa|down_8|NZ_CP023497.1_754412_755459_-	PRK03906, PRK03906, mannonate dehydratase; Provisional	NA|474aa|down_9|NZ_CP023497.1_755455_756877_-	PRK02925, PRK02925, glucuronate isomerase; Reviewed
GCF_002386185.1_ASM238618v1	NZ_CP023497	Staphylococcus simulans strain FDAARGOS_383 chromosome, complete genome	2	2160941-2161370	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2	DEDDh,csa3,WYL,cas2,cas1,cas9,RT,cas3,DinG	Unclear	GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC,GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC,GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	5,6,6	6	Unclear	DEDDh,csa3,WYL,cas2,cas1,cas9,RT,cas3,DinG,casR	NA|284aa|up_0|NZ_CP023497.1_2160038_2160890_+,NA	NA|205aa|up_9|NZ_CP023497.1_2146454_2147069_+	pfam05103, DivIVA, DivIVA protein	NA|916aa|up_8|NZ_CP023497.1_2147303_2150051_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|439aa|up_7|NZ_CP023497.1_2150164_2151481_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|265aa|up_6|NZ_CP023497.1_2151714_2152509_+	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only]	NA|153aa|up_5|NZ_CP023497.1_2152542_2153001_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|161aa|up_4|NZ_CP023497.1_2153130_2153613_+	PRK00376, lspA, lipoprotein signal peptidase	NA|306aa|up_3|NZ_CP023497.1_2153625_2154543_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	cas1|292aa|up_2|NZ_CP023497.1_2158823_2159699_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|106aa|up_1|NZ_CP023497.1_2159724_2160042_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|284aa|up_0|NZ_CP023497.1_2160038_2160890_+	NA	NA|176aa|down_0|NZ_CP023497.1_2161762_2162290_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|434aa|down_1|NZ_CP023497.1_2162511_2163813_+	PRK10720, PRK10720, uracil transporter; Provisional	NA|303aa|down_2|NZ_CP023497.1_2163843_2164752_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|424aa|down_3|NZ_CP023497.1_2164738_2166010_+	PRK09357, pyrC, dihydroorotase; Validated	NA|367aa|down_4|NZ_CP023497.1_2166016_2167117_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1058aa|down_5|NZ_CP023497.1_2167109_2170283_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|255aa|down_6|NZ_CP023497.1_2170340_2171105_+	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase	NA|306aa|down_7|NZ_CP023497.1_2171101_2172019_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|235aa|down_8|NZ_CP023497.1_2172018_2172723_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|204aa|down_9|NZ_CP023497.1_2172724_2173336_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated
GCF_002386185.1_ASM238618v1	NZ_CP023496	Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence	1	82474-83045	1	CRT	no	casR	csa3,RT,casR,DinG	Orphan	ACAACAGAACAANCTTCAACAGAAGA	26	0	0	NA	NA	NA	12	12	Orphan	DEDDh,csa3,WYL,cas2,cas1,cas9,RT,cas3,DinG,casR	NA|67aa|up_8|NZ_CP023496.1_65876_66077_+,NA|56aa|up_6|NZ_CP023496.1_67818_67986_+,NA|176aa|up_0|NZ_CP023496.1_81259_81787_-,NA|34aa|down_2|NZ_CP023496.1_91370_91472_+,NA|111aa|down_6|NZ_CP023496.1_95657_95990_+,NA|107aa|down_7|NZ_CP023496.1_96743_97064_+	NA|388aa|up_9|NZ_CP023496.1_64165_65329_+	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|67aa|up_8|NZ_CP023496.1_65876_66077_+	NA	casR|313aa|up_7|NZ_CP023496.1_66833_67772_+	cd00092, HTH_CRP, helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family	NA|56aa|up_6|NZ_CP023496.1_67818_67986_+	NA	NA|190aa|up_5|NZ_CP023496.1_71609_72179_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|315aa|up_4|NZ_CP023496.1_72528_73473_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|894aa|up_3|NZ_CP023496.1_73496_76178_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|445aa|up_2|NZ_CP023496.1_77368_78703_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|44aa|up_1|NZ_CP023496.1_80115_80247_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|176aa|up_0|NZ_CP023496.1_81259_81787_-	NA	NA|535aa|down_0|NZ_CP023496.1_88097_89702_+	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|500aa|down_1|NZ_CP023496.1_89836_91336_+	PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed	NA|34aa|down_2|NZ_CP023496.1_91370_91472_+	NA	NA|168aa|down_3|NZ_CP023496.1_92556_93060_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|80aa|down_4|NZ_CP023496.1_93127_93367_-	COG5547, COG5547, Small integral membrane protein [Function unknown]	NA|183aa|down_5|NZ_CP023496.1_93382_93931_-	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|111aa|down_6|NZ_CP023496.1_95657_95990_+	NA	NA|107aa|down_7|NZ_CP023496.1_96743_97064_+	NA	NA|63aa|down_8|NZ_CP023496.1_97757_97946_+	pfam05532, CsbD, CsbD-like	NA|553aa|down_9|NZ_CP023496.1_99112_100771_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins
