assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	1	125398-125498	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|70aa|up_8|NZ_CP023500.1_116970_117180_-,NA|128aa|up_6|NZ_CP023500.1_118004_118388_-,NA|34aa|up_0|NZ_CP023500.1_124622_124724_+,NA|221aa|down_1|NZ_CP023500.1_126588_127251_-,NA|179aa|down_7|NZ_CP023500.1_133342_133879_-	NA|84aa|up_9|NZ_CP023500.1_116680_116932_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP023500.1_116970_117180_-	NA	NA|194aa|up_7|NZ_CP023500.1_117357_117939_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP023500.1_118004_118388_-	NA	NA|209aa|up_5|NZ_CP023500.1_118642_119269_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP023500.1_119713_121237_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP023500.1_121252_121822_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP023500.1_122313_123069_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP023500.1_123149_124538_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP023500.1_124622_124724_+	NA	NA|319aa|down_0|NZ_CP023500.1_125514_126471_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP023500.1_126588_127251_-	NA	NA|136aa|down_2|NZ_CP023500.1_127393_127801_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP023500.1_128313_128892_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP023500.1_128891_130160_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP023500.1_130197_131664_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP023500.1_131688_133230_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP023500.1_133342_133879_-	NA	NA|235aa|down_8|NZ_CP023500.1_134271_134976_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP023500.1_135374_135647_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	2	370052-370144	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|36aa|up_3|NZ_CP023500.1_366535_366643_+,NA|169aa|down_4|NZ_CP023500.1_373891_374398_+,NA|239aa|down_5|NZ_CP023500.1_374559_375276_+	NA|313aa|up_9|NZ_CP023500.1_360737_361676_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP023500.1_361886_362423_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP023500.1_362591_363068_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP023500.1_363107_364403_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP023500.1_364430_364952_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP023500.1_365450_366461_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP023500.1_366535_366643_+	NA	NA|139aa|up_2|NZ_CP023500.1_366735_367152_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP023500.1_367148_368810_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP023500.1_369198_369834_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP023500.1_370212_371100_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP023500.1_371247_372198_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP023500.1_372252_372972_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP023500.1_372955_373756_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP023500.1_373891_374398_+	NA	NA|239aa|down_5|NZ_CP023500.1_374559_375276_+	NA	NA|263aa|down_6|NZ_CP023500.1_375444_376233_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP023500.1_376483_376858_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP023500.1_377805_378735_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP023500.1_378929_379154_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	3	486132-486214	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|69aa|up_9|NZ_CP023500.1_472732_472939_+,NA|34aa|down_1|NZ_CP023500.1_487670_487772_+,NA|52aa|down_8|NZ_CP023500.1_495951_496107_+	NA|69aa|up_9|NZ_CP023500.1_472732_472939_+	NA	NA|237aa|up_8|NZ_CP023500.1_473026_473737_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP023500.1_473720_474725_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP023500.1_475198_477139_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP023500.1_477409_479293_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP023500.1_479304_481086_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP023500.1_481307_482285_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP023500.1_482277_483792_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP023500.1_484031_485090_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP023500.1_485440_485983_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP023500.1_486662_487580_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP023500.1_487670_487772_+	NA	NA|502aa|down_2|NZ_CP023500.1_487849_489355_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP023500.1_489695_490196_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP023500.1_490215_491082_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP023500.1_491882_492281_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP023500.1_492243_494349_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP023500.1_494466_495438_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP023500.1_495951_496107_+	NA	NA|324aa|down_9|NZ_CP023500.1_496145_497117_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	4	527184-527264	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	10	527210-527238|527210-527238|527210-527238|527210-527238|527210-527238|527210-527238|527210-527238|527210-527238|527210-527238|527210-527238	NZ_CP023500.1_2472557-2472585|NZ_CP023500.1_86893-86865|NZ_CP023500.1_86948-86920|NZ_CP023500.1_1513513-1513485|NZ_CP023500.1_576036-576064|NZ_CP023500.1_660429-660457|NZ_CP023500.1_858976-858948|NZ_CP023500.1_1334926-1334954|NZ_CP023500.1_1681105-1681133|NZ_CP023500.1_2222454-2222426	NA	1	1	Unclear	cas3,DEDDh,csa3,WYL	NA|35aa|up_7|NZ_CP023500.1_518097_518202_+,NA|36aa|up_5|NZ_CP023500.1_519634_519742_+,NA	NA|191aa|up_9|NZ_CP023500.1_514538_515111_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP023500.1_515524_518056_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP023500.1_518097_518202_+	NA	NA|370aa|up_6|NZ_CP023500.1_518370_519481_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP023500.1_519634_519742_+	NA	NA|280aa|up_4|NZ_CP023500.1_519889_520729_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP023500.1_520902_521553_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP023500.1_521549_521786_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP023500.1_522054_524040_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP023500.1_524047_526894_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP023500.1_527500_528433_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP023500.1_528438_529278_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP023500.1_529285_529771_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP023500.1_529778_531218_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP023500.1_531284_532220_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP023500.1_533157_534069_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP023500.1_534065_535061_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP023500.1_535170_536115_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP023500.1_536687_537275_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP023500.1_537517_538420_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	5	532582-532667	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	532612-532637|532612-532637|532612-532637|532612-532637|532612-532637	NZ_CP023500.1_495629-495604|NZ_CP023500.1_859008-858983|NZ_CP023500.1_2472525-2472550|NZ_CP023500.1_495685-495660|NZ_CP023500.1_640759-640734	NA	1	1	Unclear	cas3,DEDDh,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP023500.1_519889_520729_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP023500.1_520902_521553_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP023500.1_521549_521786_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP023500.1_522054_524040_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP023500.1_524047_526894_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP023500.1_527500_528433_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP023500.1_528438_529278_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP023500.1_529285_529771_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP023500.1_529778_531218_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP023500.1_531284_532220_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP023500.1_533157_534069_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP023500.1_534065_535061_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP023500.1_535170_536115_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP023500.1_536687_537275_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP023500.1_537517_538420_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP023500.1_539122_539752_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP023500.1_540511_541525_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP023500.1_541577_542588_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP023500.1_542726_543917_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP023500.1_544038_544800_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	6	575970-576051	6	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	575994-576027|575994-576027	NZ_CP023500.1_1067175-1067142|NZ_CP023500.1_1155585-1155618	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA,NA|144aa|down_8|NZ_CP023500.1_583086_583518_-	NA|194aa|up_9|NZ_CP023500.1_569073_569655_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP023500.1_569727_570345_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP023500.1_570499_570994_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP023500.1_571392_571815_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP023500.1_571962_572679_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP023500.1_572761_573301_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP023500.1_573450_573771_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP023500.1_573914_574271_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP023500.1_574428_574809_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP023500.1_574987_575866_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP023500.1_576607_576994_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP023500.1_576986_577283_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP023500.1_577532_578558_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP023500.1_578550_579246_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP023500.1_579263_580085_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP023500.1_580227_581448_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP023500.1_581536_582265_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP023500.1_582288_583017_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|144aa|down_8|NZ_CP023500.1_583086_583518_-	NA	NA|153aa|down_9|NZ_CP023500.1_583534_583993_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	7	640760-641042	1	CRT	no		cas3,DEDDh,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	640790-640815|640790-640815|640790-640815|640790-640815|640904-640929|640904-640929	NZ_CP023500.1_640734-640759|NZ_CP023500.1_495604-495629|NZ_CP023500.1_858983-859008|NZ_CP023500.1_2472550-2472525|NZ_CP023500.1_532693-532668|NZ_CP023500.1_86731-86756	NA	4	4	Orphan	cas3,DEDDh,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP023500.1_629648_631145_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP023500.1_631137_631479_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP023500.1_631478_631907_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP023500.1_631899_634305_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP023500.1_634435_634819_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP023500.1_634882_635476_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP023500.1_635891_636269_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP023500.1_636630_637758_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP023500.1_638065_639256_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP023500.1_639364_640609_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP023500.1_641111_642041_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP023500.1_642282_643662_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP023500.1_643651_644857_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP023500.1_645207_646539_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP023500.1_646863_647439_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP023500.1_647443_647968_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP023500.1_647983_648559_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP023500.1_648718_652195_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP023500.1_652195_655849_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP023500.1_656014_656917_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	8	1513522-1513748	7	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	GGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA,NA	NA|199aa|up_9|NZ_CP023500.1_1504077_1504674_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP023500.1_1504702_1505560_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP023500.1_1505659_1505971_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP023500.1_1506035_1507112_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP023500.1_1507198_1507510_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP023500.1_1507634_1508477_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP023500.1_1508946_1509591_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP023500.1_1509605_1510397_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP023500.1_1510946_1511795_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP023500.1_1511798_1513208_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP023500.1_1514127_1514550_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP023500.1_1514566_1515262_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP023500.1_1515258_1516920_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP023500.1_1517326_1518595_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP023500.1_1518711_1525272_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP023500.1_1525597_1525909_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NZ_CP023500.1_1525930_1528348_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP023500.1_1528635_1529817_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP023500.1_1529926_1530880_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP023500.1_1530876_1531440_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	9	1670279-1670357	8	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	5	1670302-1670334|1670302-1670334|1670302-1670334|1670302-1670334|1670302-1670334	NZ_CP023500.1_532648-532680|NZ_CP023500.1_1067129-1067097|NZ_CP023500.1_1334987-1335019|NZ_CP023500.1_2306994-2307026|NZ_CP023500.1_1155631-1155663	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|92aa|up_6|NZ_CP023500.1_1664473_1664749_+,NA|129aa|up_1|NZ_CP023500.1_1668734_1669121_-,NA|138aa|down_1|NZ_CP023500.1_1672099_1672513_-,NA|37aa|down_2|NZ_CP023500.1_1672541_1672652_-,NA|31aa|down_6|NZ_CP023500.1_1675657_1675750_-	NA|419aa|up_9|NZ_CP023500.1_1662396_1663653_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP023500.1_1663655_1663856_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP023500.1_1664002_1664467_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP023500.1_1664473_1664749_+	NA	NA|406aa|up_5|NZ_CP023500.1_1665026_1666244_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP023500.1_1666359_1666989_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP023500.1_1666978_1668022_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP023500.1_1668018_1668720_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP023500.1_1668734_1669121_-	NA	NA|253aa|up_0|NZ_CP023500.1_1669337_1670096_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP023500.1_1670623_1671610_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP023500.1_1672099_1672513_-	NA	NA|37aa|down_2|NZ_CP023500.1_1672541_1672652_-	NA	NA|244aa|down_3|NZ_CP023500.1_1672737_1673469_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP023500.1_1673470_1674784_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP023500.1_1675075_1675576_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP023500.1_1675657_1675750_-	NA	DEDDh|185aa|down_7|NZ_CP023500.1_1675964_1676519_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP023500.1_1676586_1677657_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP023500.1_1677903_1678434_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	10	1906490-1906570	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,csa3,WYL	Type I-A	TTACAACTTTAGTTGTTAGGGGCT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|77aa|up_5|NZ_CP023500.1_1901365_1901596_-,NA|364aa|up_0|NZ_CP023500.1_1905384_1906476_+,NA|35aa|down_0|NZ_CP023500.1_1906909_1907014_-,NA|31aa|down_2|NZ_CP023500.1_1909125_1909218_+	NA|237aa|up_9|NZ_CP023500.1_1896975_1897686_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP023500.1_1897806_1898250_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP023500.1_1898449_1898863_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP023500.1_1899320_1900694_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP023500.1_1901365_1901596_-	NA	NA|313aa|up_4|NZ_CP023500.1_1901626_1902565_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP023500.1_1902999_1903665_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP023500.1_1903816_1904137_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP023500.1_1904138_1905119_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP023500.1_1905384_1906476_+	NA	NA|35aa|down_0|NZ_CP023500.1_1906909_1907014_-	NA	NA|379aa|down_1|NZ_CP023500.1_1907700_1908837_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP023500.1_1909125_1909218_+	NA	NA|286aa|down_3|NZ_CP023500.1_1909922_1910780_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP023500.1_1910847_1911630_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP023500.1_1911861_1913667_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP023500.1_1914347_1915886_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP023500.1_1915920_1918053_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP023500.1_1918064_1918499_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP023500.1_1918498_1919605_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_002386245.1_ASM238624v1	NZ_CP023500	Staphylococcus aureus strain FDAARGOS_412 chromosome, complete genome	11	2030577-2030770	2	CRT	no		cas3,DEDDh,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	11	2030600-2030632|2030600-2030632|2030600-2030632|2030600-2030632|2030656-2030691|2030656-2030691|2030656-2030691|2030656-2030691|2030715-2030747|2030715-2030747|2030715-2030747	NZ_CP023500.1_532648-532680|NZ_CP023500.1_1067129-1067097|NZ_CP023500.1_1155631-1155663|NZ_CP023500.1_2306994-2307026|NZ_CP023500.1_858976-858941|NZ_CP023500.1_1513513-1513478|NZ_CP023500.1_1334926-1334961|NZ_CP023500.1_1681105-1681140|NZ_CP023500.1_532648-532680|NZ_CP023500.1_1067129-1067097|NZ_CP023500.1_2306994-2307026	NA	3	3	Orphan	cas3,DEDDh,csa3,WYL	NA|55aa|up_9|NZ_CP023500.1_2021104_2021269_+,NA|106aa|up_8|NZ_CP023500.1_2021513_2021831_+,NA|84aa|up_5|NZ_CP023500.1_2026955_2027207_+,NA|58aa|up_0|NZ_CP023500.1_2030343_2030517_+,NA	NA|55aa|up_9|NZ_CP023500.1_2021104_2021269_+	NA	NA|106aa|up_8|NZ_CP023500.1_2021513_2021831_+	NA	NA|1056aa|up_7|NZ_CP023500.1_2022017_2025185_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP023500.1_2025301_2026567_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP023500.1_2026955_2027207_+	NA	NA|255aa|up_4|NZ_CP023500.1_2027198_2027963_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP023500.1_2028124_2028565_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP023500.1_2028557_2029769_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP023500.1_2029870_2030221_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|58aa|up_0|NZ_CP023500.1_2030343_2030517_+	NA	NA|341aa|down_0|NZ_CP023500.1_2030911_2031934_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP023500.1_2031953_2032553_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP023500.1_2032559_2032793_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP023500.1_2032798_2033245_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP023500.1_2033258_2033744_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP023500.1_2033740_2035000_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP023500.1_2035062_2035557_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP023500.1_2035558_2036065_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP023500.1_2036095_2037100_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP023500.1_2037269_2037875_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
