assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002407065.1_ASM240706v1	NZ_CP023564	Brachybacterium ginsengisoli strain DCY80 chromosome, complete genome	1	126136-126246	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,Cas9_archaeal,WYL,DinG	Orphan	CGACCACGAGGGCCACGACCACGA	24	1	2	126160-126180|126160-126180	NZ_CP023564.1_1999864-1999884|NZ_CP023564.1_3489200-3489220	NA	2	2	Orphan	csa3,cas3,DEDDh,Cas9_archaeal,WYL,DinG	NA|131aa|up_3|NZ_CP023564.1_119711_120104_+,NA	NA|361aa|up_9|NZ_CP023564.1_112510_113593_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|347aa|up_8|NZ_CP023564.1_114138_115179_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|266aa|up_7|NZ_CP023564.1_115283_116081_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|465aa|up_6|NZ_CP023564.1_116299_117694_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|253aa|up_5|NZ_CP023564.1_117851_118610_+	cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|247aa|up_4|NZ_CP023564.1_118793_119534_+	cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|131aa|up_3|NZ_CP023564.1_119711_120104_+	NA	NA|72aa|up_2|NZ_CP023564.1_120115_120331_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|799aa|up_1|NZ_CP023564.1_120469_122866_+	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|448aa|up_0|NZ_CP023564.1_123105_124449_+	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase	NA|263aa|down_0|NZ_CP023564.1_126286_127075_-	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|378aa|down_1|NZ_CP023564.1_127170_128304_-	pfam01636, APH, Phosphotransferase enzyme family	NA|307aa|down_2|NZ_CP023564.1_128456_129377_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|180aa|down_3|NZ_CP023564.1_129872_130412_+	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|124aa|down_4|NZ_CP023564.1_131110_131482_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|332aa|down_5|NZ_CP023564.1_131769_132765_-	PRK13773, PRK13773, formimidoylglutamase; Provisional	NA|303aa|down_6|NZ_CP023564.1_132889_133798_+	pfam01226, Form_Nir_trans, Formate/nitrite transporter	NA|266aa|down_7|NZ_CP023564.1_133864_134662_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|303aa|down_8|NZ_CP023564.1_134658_135567_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|180aa|down_9|NZ_CP023564.1_135686_136226_+	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002407065.1_ASM240706v1	NZ_CP023564	Brachybacterium ginsengisoli strain DCY80 chromosome, complete genome	2	592107-593204	1	CRT	no		csa3,cas3,DEDDh,Cas9_archaeal,WYL,DinG	Orphan	NAACACNGACGTGAACAC	18	0	0	NA	NA	NA	20	20	Orphan	csa3,cas3,DEDDh,Cas9_archaeal,WYL,DinG	NA|350aa|up_6|NZ_CP023564.1_582292_583342_+,NA|151aa|up_2|NZ_CP023564.1_587822_588275_-,NA|179aa|up_1|NZ_CP023564.1_588397_588934_+,NA|62aa|up_0|NZ_CP023564.1_589080_589266_+,NA|251aa|down_0|NZ_CP023564.1_594556_595309_+,NA|258aa|down_4|NZ_CP023564.1_598701_599475_-,NA|204aa|down_5|NZ_CP023564.1_599878_600490_+,NA|206aa|down_6|NZ_CP023564.1_600540_601158_+,NA|176aa|down_7|NZ_CP023564.1_602515_603043_+	NA|418aa|up_9|NZ_CP023564.1_577426_578680_-	PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional	NA|565aa|up_8|NZ_CP023564.1_578893_580588_-	pfam07940, Hepar_II_III, Heparinase II/III-like protein	NA|531aa|up_7|NZ_CP023564.1_580584_582177_-	TIGR04063, Glycosyl_transferase_group_1, PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family	NA|350aa|up_6|NZ_CP023564.1_582292_583342_+	NA	NA|126aa|up_5|NZ_CP023564.1_583662_584040_+	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators	NA|630aa|up_4|NZ_CP023564.1_584020_585910_-	cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine	NA|566aa|up_3|NZ_CP023564.1_586046_587744_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|151aa|up_2|NZ_CP023564.1_587822_588275_-	NA	NA|179aa|up_1|NZ_CP023564.1_588397_588934_+	NA	NA|62aa|up_0|NZ_CP023564.1_589080_589266_+	NA	NA|251aa|down_0|NZ_CP023564.1_594556_595309_+	NA	NA|364aa|down_1|NZ_CP023564.1_595305_596397_+	smart00752, HTTM, Horizontally Transferred TransMembrane Domain	NA|476aa|down_2|NZ_CP023564.1_596467_597895_-	pfam03929, PepSY_TM, PepSY-associated TM region	NA|266aa|down_3|NZ_CP023564.1_597902_598700_-	cd05829, Sortase_F, Sortase domain found in the class F family of sortases	NA|258aa|down_4|NZ_CP023564.1_598701_599475_-	NA	NA|204aa|down_5|NZ_CP023564.1_599878_600490_+	NA	NA|206aa|down_6|NZ_CP023564.1_600540_601158_+	NA	NA|176aa|down_7|NZ_CP023564.1_602515_603043_+	NA	NA|600aa|down_8|NZ_CP023564.1_603191_604991_+	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|629aa|down_9|NZ_CP023564.1_604987_606874_+	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127
GCF_002407065.1_ASM240706v1	NZ_CP023564	Brachybacterium ginsengisoli strain DCY80 chromosome, complete genome	3	631064-631178	2	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,Cas9_archaeal,WYL,DinG	Type I-A	ACCGTGTCGGAGTCACGAACAGGGGCGAATG	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,Cas9_archaeal,WYL,DinG	NA,NA	NA|395aa|up_9|NZ_CP023564.1_614581_615766_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|667aa|up_8|NZ_CP023564.1_616838_618839_+	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|382aa|up_7|NZ_CP023564.1_619280_620426_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|275aa|up_6|NZ_CP023564.1_620422_621247_-	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|224aa|up_5|NZ_CP023564.1_621376_622048_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|289aa|up_4|NZ_CP023564.1_622278_623145_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|426aa|up_3|NZ_CP023564.1_623380_624658_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|444aa|up_2|NZ_CP023564.1_624745_626077_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|347aa|up_1|NZ_CP023564.1_626211_627252_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|452aa|up_0|NZ_CP023564.1_627248_628604_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|371aa|down_0|NZ_CP023564.1_631409_632522_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|537aa|down_1|NZ_CP023564.1_632781_634392_-	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|254aa|down_2|NZ_CP023564.1_634388_635150_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|323aa|down_3|NZ_CP023564.1_635146_636115_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|331aa|down_4|NZ_CP023564.1_636119_637112_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|409aa|down_5|NZ_CP023564.1_637111_638338_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|482aa|down_6|NZ_CP023564.1_639084_640530_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|826aa|down_7|NZ_CP023564.1_641126_643604_+	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|916aa|down_8|NZ_CP023564.1_643797_646545_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|455aa|down_9|NZ_CP023564.1_646630_647995_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter
GCF_002407065.1_ASM240706v1	NZ_CP023564	Brachybacterium ginsengisoli strain DCY80 chromosome, complete genome	4	3810790-3810957	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,Cas9_archaeal,WYL,DinG	Orphan	ACAGCAGCCCTCAACGGTCAGCTGGCGAACCGGAATCGCGCCGGATCTGGTTCG	54	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,Cas9_archaeal,WYL,DinG	NA|298aa|up_2|NZ_CP023564.1_3807847_3808741_+,NA	NA|320aa|up_9|NZ_CP023564.1_3798821_3799781_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|294aa|up_8|NZ_CP023564.1_3799830_3800712_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|375aa|up_7|NZ_CP023564.1_3800743_3801868_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|545aa|up_6|NZ_CP023564.1_3802109_3803744_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|557aa|up_5|NZ_CP023564.1_3803743_3805414_-	cd08506, PBP2_clavulanate_OppA2, The substrate-binding domain of an oligopeptide binding protein (OppA2) from the biosynthesis pathway of the beta-lactamase inhibitor clavulanic acid contains the type 2 periplasmic binding fold	NA|349aa|up_4|NZ_CP023564.1_3805410_3806457_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|314aa|up_3|NZ_CP023564.1_3806453_3807395_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|298aa|up_2|NZ_CP023564.1_3807847_3808741_+	NA	NA|410aa|up_1|NZ_CP023564.1_3808799_3810029_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|231aa|up_0|NZ_CP023564.1_3810066_3810759_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|313aa|down_0|NZ_CP023564.1_3811007_3811946_-	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|333aa|down_1|NZ_CP023564.1_3811932_3812931_-	cd19152, AKR_AKR15A, AKR15A family of aldo-keto reductase	NA|113aa|down_2|NZ_CP023564.1_3812927_3813266_-	pfam05336, rhaM, L-rhamnose mutarotase	NA|465aa|down_3|NZ_CP023564.1_3813294_3814689_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|285aa|down_4|NZ_CP023564.1_3814766_3815621_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|431aa|down_5|NZ_CP023564.1_3815994_3817287_+	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|573aa|down_6|NZ_CP023564.1_3817296_3819015_-	PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated	NA|238aa|down_7|NZ_CP023564.1_3819227_3819941_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|305aa|down_8|NZ_CP023564.1_3820019_3820934_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|323aa|down_9|NZ_CP023564.1_3821136_3822105_-	cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor
