The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023184	Yersinia ruckeri strain NHV_3758 chromosome, complete genome	3766700	1481885	1491439	3766700	protease,tRNA	Dickeya_phage(16.67%)	8	NA	NA
WP_038241510.1|1481885_1483001_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	1.9e-10
WP_004717322.1|1483000_1484950_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	39.3	7.2e-37
WP_004717324.1|1485061_1485283_-	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	59.7	4.6e-17
WP_004717325.1|1485642_1485963_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.7	1.8e-14
WP_038275712.1|1485990_1488267_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	4.3e-166
WP_002211347.1|1488522_1488741_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_004717329.1|1488904_1489615_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_004717331.1|1489714_1491439_-	thiol reductant ABC exporter subunit CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	29.5	2.0e-14
>prophage 2
NZ_CP023184	Yersinia ruckeri strain NHV_3758 chromosome, complete genome	3766700	2118682	2227014	3766700	bacteriocin,plate,capsid,terminase,tRNA,portal,holin,protease,integrase,tail	Escherichia_phage(21.57%)	103	2106317:2106333	2231147:2231163
2106317:2106333	attL	GCCGATACCACAATAAA	NA	NA	NA	NA
WP_096823426.1|2118682_2119144_+|tail	phage tail protein	tail	A0A0M4R2U5	Salmonella_phage	51.4	7.6e-38
WP_096823427.1|2119196_2119814_+	phage virion morphogenesis protein	NA	A0A0A7NV60	Enterobacteria_phage	42.5	1.0e-37
WP_004717719.1|2119907_2120096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823428.1|2120092_2120680_+	cell filamentation protein Fic	NA	NA	NA	NA	NA
WP_096823429.1|2120793_2121453_+|plate	phage baseplate assembly protein V	plate	A0A0F7LDY9	Escherichia_phage	46.7	1.6e-41
WP_032896992.1|2122579_2122876_+	TM2 domain-containing protein	NA	M4ZS56	Bacillus_phage	70.3	6.2e-17
WP_004717732.1|2123089_2123386_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	4.2e-13
WP_004717734.1|2123390_2125778_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	27.8	5.1e-08
WP_004717736.1|2125792_2126776_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	39.0	1.2e-35
WP_004717737.1|2127256_2127613_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_002211834.1|2127650_2127848_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_002227898.1|2127946_2128498_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.7	2.6e-16
WP_004717744.1|2128501_2130430_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.2	1.0e-128
WP_004717745.1|2130969_2131278_+	DUF1622 domain-containing protein	NA	NA	NA	NA	NA
WP_004717749.1|2131823_2132036_+	KTSC domain-containing protein	NA	A0A0K1LMB5	Caulobacter_phage	38.6	8.4e-08
WP_004717751.1|2132320_2132554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038275998.1|2132811_2133171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038251418.1|2133802_2133988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004717757.1|2134107_2134359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004717760.1|2134630_2135311_+	stress protection protein MarC	NA	NA	NA	NA	NA
WP_038242711.1|2135455_2136112_-	lytic transglycosylase	NA	I6ZXX9	Escherichia_phage	46.9	9.3e-05
WP_004717765.1|2136322_2137285_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_038242713.1|2137281_2138172_+	iron ABC transporter permease	NA	A0A1V0SKJ1	Klosneuvirus	26.2	9.4e-08
WP_004717767.1|2138171_2139053_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_004717772.1|2140133_2140997_+	fructosamine kinase family protein	NA	NA	NA	NA	NA
WP_004717774.1|2141092_2141647_-	yfeABCD regulator yfeE	NA	NA	NA	NA	NA
WP_004717775.1|2141949_2142615_+	2-deoxyglucose-6-phosphatase	NA	NA	NA	NA	NA
WP_004717777.1|2143093_2143642_+	membrane protein	NA	A0A127AVX7	Bacillus_phage	35.1	2.3e-09
WP_087931106.1|2143835_2145233_+	L-cystine transporter	NA	NA	NA	NA	NA
WP_038242778.1|2145497_2146328_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	31.8	3.4e-12
WP_038276006.1|2146621_2147413_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
WP_038242721.1|2147706_2149092_+	MFS transporter	NA	NA	NA	NA	NA
WP_004723356.1|2149373_2150258_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_004723357.1|2150568_2152608_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	34.2	2.3e-86
WP_004723358.1|2152627_2153341_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_038276008.1|2153436_2153934_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_071704468.1|2154273_2155521_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
WP_038276011.1|2155489_2158120_+	MCE family protein	NA	NA	NA	NA	NA
WP_004721693.1|2159034_2160744_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_004721695.1|2160854_2161097_+	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
WP_004721697.1|2161216_2161615_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_004721700.1|2162284_2162518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038242727.1|2163044_2163704_-	lipoprotein	NA	NA	NA	NA	NA
WP_004721705.1|2163700_2164069_-	DUF4810 domain-containing protein	NA	NA	NA	NA	NA
WP_038251427.1|2164075_2164747_-	membrane protein	NA	NA	NA	NA	NA
WP_038242732.1|2165559_2165739_+	GhoT/OrtT family toxin	NA	NA	NA	NA	NA
WP_096823678.1|2166278_2166686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004721714.1|2167869_2168499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004721715.1|2168705_2169392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004721718.1|2170132_2171278_+	CMY/LAT/MOX/ACT/MIR/FOX family class C beta-lactamase	NA	NA	NA	NA	NA
WP_096823430.1|2171396_2172002_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	45.8	9.7e-41
WP_096823431.1|2172255_2172468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823432.1|2172772_2175064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823433.1|2175547_2177275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823434.1|2177519_2185868_-	hypothetical protein	NA	Q08J70	Stx2-converting_phage	29.8	1.0e-281
WP_096823435.1|2186369_2187758_-	hypothetical protein	NA	A0A0P0ZD72	Stx2-converting_phage	28.0	3.2e-23
WP_096823436.1|2187770_2188031_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_096823437.1|2188030_2188414_-	hypothetical protein	NA	A0A1I9KFD7	Aeromonas_phage	59.2	2.3e-32
WP_096823438.1|2188416_2189076_-	hypothetical protein	NA	A0A1I9KFE8	Aeromonas_phage	54.6	1.8e-48
WP_096823439.1|2189331_2189706_-	hypothetical protein	NA	A0A2L1IV61	Escherichia_phage	51.3	9.0e-29
WP_096823440.1|2189680_2190709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038246004.1|2190775_2191990_-	DUF1983 domain-containing protein	NA	A0A2L1IV54	Escherichia_phage	50.7	3.7e-108
WP_096823441.1|2191986_2193615_-	hypothetical protein	NA	A0A0P0ZG21	Escherichia_phage	56.9	7.6e-181
WP_096823442.1|2195024_2197394_-	hypothetical protein	NA	K7PHF0	Enterobacteria_phage	31.0	2.0e-28
WP_096823443.1|2197390_2198044_-	hypothetical protein	NA	Q08J85	Stx2-converting_phage	58.1	2.2e-67
WP_096823444.1|2198043_2198631_-	hypothetical protein	NA	A0A0P0ZGG2	Escherichia_phage	39.0	5.2e-31
WP_038245291.1|2198633_2199074_-	hypothetical protein	NA	A0A2L1IV43	Escherichia_phage	49.7	1.1e-28
WP_096823445.1|2199128_2199512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038245287.1|2199574_2200798_-|capsid	N4-gp56 family major capsid protein	capsid	A0A088CC32	Shigella_phage	75.1	3.0e-174
WP_096823446.1|2200858_2201911_-	hypothetical protein	NA	A0A2L1IV47	Escherichia_phage	45.5	9.2e-63
WP_096823447.1|2202181_2204308_-|portal	portal protein	portal	A0A0P0ZG74	Escherichia_phage	68.3	2.2e-257
WP_096823679.1|2204307_2205972_-|terminase	terminase	terminase	A0A2R2Z350	Escherichia_phage	70.7	1.9e-235
WP_096823448.1|2206010_2206868_-|terminase	terminase	terminase	A0A1I9KFG9	Aeromonas_phage	39.7	1.9e-45
WP_051847063.1|2206933_2207278_-	hypothetical protein	NA	W8EHJ5	Vibrio_phage	72.4	1.5e-33
WP_096823449.1|2207274_2207817_-	DUF2570 domain-containing protein	NA	H9C185	Pectobacterium_phage	41.3	3.3e-16
WP_096823450.1|2207948_2208437_-	lysozyme	NA	A0A2H4JCH1	uncultured_Caudovirales_phage	61.9	1.8e-53
WP_038245276.1|2208436_2208649_-|holin	holin	holin	H9C183	Pectobacterium_phage	71.4	5.4e-23
WP_096823451.1|2208821_2209631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823452.1|2209721_2210105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823453.1|2210129_2210600_-	VRR-NUC domain-containing protein	NA	M4SRS1	Psychrobacter_phage	30.2	2.6e-09
WP_096823454.1|2210592_2210925_-	DUF1364 domain-containing protein	NA	A0A223LHA7	Pseudoalteromonas_phage	43.9	8.5e-15
WP_096823455.1|2210926_2211574_-	DUF1367 domain-containing protein	NA	A0A0U2RT94	Escherichia_phage	31.2	1.3e-14
WP_096823456.1|2211570_2213583_-	hypothetical protein	NA	A0A1B0V7P0	Salmonella_phage	50.9	1.2e-124
WP_096823457.1|2213579_2214506_-	site-specific DNA-methyltransferase	NA	A0A059VK11	Pseudomonas_phage	53.1	8.3e-108
WP_096823458.1|2214502_2214850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823459.1|2214849_2215986_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	61.3	7.5e-95
WP_096823460.1|2215989_2216763_-	hypothetical protein	NA	H2DE84	Erwinia_phage	50.8	1.4e-47
WP_096823461.1|2216765_2217611_-	hypothetical protein	NA	H2DE83	Erwinia_phage	42.5	6.1e-41
WP_096823462.1|2217619_2217799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823463.1|2217795_2218158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038243388.1|2218243_2218549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823464.1|2218630_2218897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823465.1|2219006_2219678_+	helix-turn-helix domain-containing protein	NA	Q8W648	Enterobacteria_phage	36.8	9.8e-26
WP_096823466.1|2219693_2220044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823467.1|2220237_2220567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823468.1|2220645_2220915_+	KTSC domain-containing protein	NA	A9YWW2	Burkholderia_phage	42.2	7.2e-12
WP_096823469.1|2220954_2221425_+	hypothetical protein	NA	G0YQE7	Erwinia_phage	61.8	4.6e-46
WP_096823470.1|2221464_2221767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823680.1|2222109_2222913_+	phage recombination protein Bet	NA	A0A1I9KF88	Aeromonas_phage	60.4	2.4e-71
WP_096823471.1|2222899_2224504_+	hypothetical protein	NA	A0A2H4J6P1	uncultured_Caudovirales_phage	52.2	5.6e-112
WP_096823472.1|2224548_2225688_+	hypothetical protein	NA	M4MHC3	Vibrio_phage	26.1	1.1e-29
WP_096823473.1|2225684_2226113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823681.1|2226792_2227014_+	hypothetical protein	NA	A0A248SL66	Klebsiella_phage	70.7	1.0e-16
2231147:2231163	attR	TTTATTGTGGTATCGGC	NA	NA	NA	NA
>prophage 3
NZ_CP023184	Yersinia ruckeri strain NHV_3758 chromosome, complete genome	3766700	2547572	2592628	3766700	plate,capsid,lysis,terminase,portal,holin,protease,head,tail	Shigella_phage(28.89%)	58	NA	NA
WP_038244185.1|2547572_2548583_-	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	47.7	5.7e-86
WP_038244187.1|2548760_2548988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071706646.1|2549015_2550809_+	DUF3413 domain-containing protein	NA	NA	NA	NA	NA
WP_038243454.1|2551475_2551898_-|tail	tail assembly chaperone	tail	B6SCW7	Bacteriophage	39.6	1.1e-17
WP_096823510.1|2551899_2552763_-	hypothetical protein	NA	U5P0I1	Shigella_phage	59.1	5.7e-26
WP_096823511.1|2552769_2553351_-	DUF2313 domain-containing protein	NA	O22003	Shigella_phage	64.7	1.9e-70
WP_045844173.1|2553341_2554400_-|plate	phage baseplate protein	plate	U5P424	Shigella_phage	61.9	3.3e-129
WP_045844174.1|2554392_2554806_-	phage GP46 family protein	NA	Q8HAB8	Salmonella_phage	59.1	1.6e-42
WP_038277337.1|2554809_2555376_-|plate	phage baseplate assembly protein V	plate	A0A192Y8K5	Salmonella_phage	46.4	2.2e-31
WP_038277335.1|2555375_2556449_-|plate	baseplate protein	plate	U5P0H6	Shigella_phage	65.2	1.9e-132
WP_096823512.1|2556445_2557750_-	DNA circularization protein	NA	S5FUX4	Shigella_phage	56.0	6.6e-135
WP_038277331.1|2557809_2558298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038277328.1|2558310_2560191_-|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	52.5	5.3e-170
WP_038277327.1|2560323_2560596_-|tail	phage tail assembly protein	tail	Q8W621	Enterobacteria_phage	48.9	2.8e-16
WP_038277325.1|2560592_2560949_-|tail	tail protein	tail	U5P076	Shigella_phage	85.6	9.1e-55
WP_096823513.1|2560949_2562443_-|tail	phage tail protein	tail	A0A192Y7L1	Salmonella_phage	68.6	1.3e-182
WP_071666880.1|2562439_2562646_-	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	71.4	3.9e-10
WP_071666881.1|2562652_2563225_-	hypothetical protein	NA	Q8HAC7	Salmonella_phage	53.2	9.5e-54
WP_071666882.1|2563221_2563746_-	hypothetical protein	NA	Q8SBH5	Shigella_phage	57.1	4.0e-43
WP_071666883.1|2563745_2564138_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_038277349.1|2564134_2564452_-|head,tail	phage gp6-like head-tail connector protein	head,tail	S5FKK6	Shigella_phage	59.4	6.4e-28
WP_026018105.1|2564535_2565762_-|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	66.5	1.0e-153
WP_019081895.1|2565780_2566380_-|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	76.5	9.2e-84
WP_038277314.1|2566372_2567602_-|portal	phage portal protein	portal	A0A1W6JP33	Morganella_phage	82.2	4.8e-196
WP_071704447.1|2567749_2569480_-|terminase	terminase large subunit	terminase	A0A1J0GUY5	Halomonas_phage	58.8	3.5e-208
WP_019083770.1|2569482_2569938_-|terminase	terminase	terminase	A0A1J0GV10	Halomonas_phage	52.9	2.1e-24
WP_096823514.1|2570074_2570425_-	HNH endonuclease	NA	A0A1W6JP27	Morganella_phage	68.1	1.4e-44
WP_049689468.1|2570621_2571143_-	DNA-binding protein	NA	K7P7K9	Enterobacteria_phage	86.6	4.4e-82
WP_096823515.1|2571332_2571785_-|lysis	lysis protein	lysis	A5LH84	Enterobacteria_phage	41.9	1.2e-19
WP_096823516.1|2571781_2572189_-	hypothetical protein	NA	A0A096XUY6	Cronobacter_phage	65.0	2.7e-39
WP_071666886.1|2572175_2572493_-|holin	holin	holin	F1C5D1	Cronobacter_phage	59.8	7.6e-29
WP_045844193.1|2572707_2572932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823517.1|2572936_2573380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823518.1|2573540_2574278_-	protein phosphatase	NA	I6PCV8	Cronobacter_phage	44.0	1.6e-50
WP_096823688.1|2574274_2575030_-	serine/threonine protein kinase	NA	I6PD73	Cronobacter_phage	38.3	1.0e-39
WP_096823519.1|2575266_2576355_-	site-specific DNA-methyltransferase	NA	A0A0N7KZF8	Stx2-converting_phage	63.1	8.2e-131
WP_038243008.1|2576722_2577541_-	antitermination protein	NA	A0A286N2Q2	Klebsiella_phage	43.9	2.0e-57
WP_038277294.1|2577598_2578600_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	47.9	1.1e-89
WP_096823520.1|2578596_2579295_-	phage regulatory protein/antirepressor Ant	NA	A0A1P8DTE1	Proteus_phage	54.1	3.4e-53
WP_038243017.1|2579388_2579766_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	65.3	6.7e-40
WP_096823521.1|2579756_2580476_-	phage N-6-adenine-methyltransferase	NA	K7PGU4	Enterobacteria_phage	70.3	1.5e-88
WP_049689476.1|2580472_2581492_-	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	73.1	9.6e-33
WP_038243030.1|2581488_2581668_-	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_038243031.1|2581669_2581852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096823522.1|2581848_2582385_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_071704192.1|2582429_2582678_-	hypothetical protein	NA	Q6J1N2	Burkholderia_virus	39.4	1.8e-09
WP_096823523.1|2582750_2583473_+	helix-turn-helix domain-containing protein	NA	S5FUZ3	Shigella_phage	35.8	7.3e-27
WP_038277368.1|2584462_2584837_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	73.9	6.8e-45
WP_038243066.1|2584895_2585723_+	DUF2303 domain-containing protein	NA	A0A0P0ZBZ4	Stx2-converting_phage	60.0	2.0e-89
WP_038243067.1|2585811_2586348_+	hypothetical protein	NA	A5LH62	Enterobacteria_phage	60.8	1.6e-55
WP_038243068.1|2586344_2586527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096823524.1|2586527_2587097_+	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	66.7	1.1e-65
WP_038277366.1|2587154_2587373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038277363.1|2587376_2588555_+	recombinase	NA	A0A2D1GN00	Marinobacter_phage	30.4	3.2e-32
WP_071704189.1|2589033_2589237_+	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
WP_004717805.1|2589733_2589976_+	DinI family protein	NA	K7PKR6	Enterobacteria_phage	69.7	1.2e-23
WP_004717807.1|2590085_2591078_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_096823525.1|2591482_2592628_+	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	A0A2H4JAN9	uncultured_Caudovirales_phage	26.8	7.3e-05
