assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002442515.1_ASM244251v1	NZ_CP023643	Brochothrix thermosphacta strain BII chromosome, complete genome	1	57167-57263	1	CRISPRCasFinder	no	DEDDh	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Unclear	GAATTCATTCGCTTTACGAGAGTA	24	1	1	57191-57239	NZ_CP023643.1_164214-164166	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA|59aa|up_4|NZ_CP023643.1_52204_52381_-,NA	NA|188aa|up_9|NZ_CP023643.1_47066_47630_-	TIGR00636, PduO_Nterm, ATP:cob(I)alamin adenosyltransferase	NA|148aa|up_8|NZ_CP023643.1_47626_48070_-	pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation	NA|479aa|up_7|NZ_CP023643.1_48314_49751_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|494aa|up_6|NZ_CP023643.1_49775_51257_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|242aa|up_5|NZ_CP023643.1_51466_52192_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|59aa|up_4|NZ_CP023643.1_52204_52381_-	NA	NA|221aa|up_3|NZ_CP023643.1_52397_53060_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|342aa|up_2|NZ_CP023643.1_53340_54366_+	PRK01889, PRK01889, GTPase RsgA; Reviewed	NA|288aa|up_1|NZ_CP023643.1_54461_55325_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|369aa|up_0|NZ_CP023643.1_55461_56568_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|492aa|down_0|NZ_CP023643.1_57317_58793_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|562aa|down_1|NZ_CP023643.1_58785_60471_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|206aa|down_2|NZ_CP023643.1_60490_61108_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|490aa|down_3|NZ_CP023643.1_61245_62715_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|306aa|down_4|NZ_CP023643.1_62734_63652_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|down_5|NZ_CP023643.1_63672_64554_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|735aa|down_6|NZ_CP023643.1_64811_67016_-	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|358aa|down_7|NZ_CP023643.1_67019_68093_-	cd06267, PBP1_LacI_sugar_binding-like, ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily	NA|430aa|down_8|NZ_CP023643.1_68310_69600_+	COG3538, COG3538, Uncharacterized conserved protein [Function unknown]	NA|902aa|down_9|NZ_CP023643.1_69624_72330_+	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]
GCF_002442515.1_ASM244251v1	NZ_CP023643	Brochothrix thermosphacta strain BII chromosome, complete genome	2	301386-301506	2	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Orphan	TCCTCATGTTAGATGCTTTAAGAGTACGATTCC	33	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA|175aa|up_9|NZ_CP023643.1_293252_293777_+,NA	NA|175aa|up_9|NZ_CP023643.1_293252_293777_+	NA	NA|164aa|up_8|NZ_CP023643.1_293960_294452_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|141aa|up_7|NZ_CP023643.1_294601_295024_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|170aa|up_6|NZ_CP023643.1_295102_295612_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|203aa|up_5|NZ_CP023643.1_295738_296347_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|270aa|up_4|NZ_CP023643.1_296349_297159_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|156aa|up_3|NZ_CP023643.1_297371_297839_+	pfam10702, DUF2507, Protein of unknown function (DUF2507)	NA|257aa|up_2|NZ_CP023643.1_297825_298596_-	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|70aa|up_1|NZ_CP023643.1_299112_299322_+	pfam07288, DUF1447, Protein of unknown function (DUF1447)	NA|559aa|up_0|NZ_CP023643.1_299328_301005_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|226aa|down_0|NZ_CP023643.1_301680_302358_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|211aa|down_1|NZ_CP023643.1_302372_303005_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|353aa|down_2|NZ_CP023643.1_302997_304056_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|240aa|down_3|NZ_CP023643.1_304052_304772_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|309aa|down_4|NZ_CP023643.1_304871_305798_-	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|111aa|down_5|NZ_CP023643.1_305974_306307_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|213aa|down_6|NZ_CP023643.1_306365_307004_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|265aa|down_7|NZ_CP023643.1_307006_307801_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|284aa|down_8|NZ_CP023643.1_308278_309130_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|469aa|down_9|NZ_CP023643.1_309157_310564_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed
GCF_002442515.1_ASM244251v1	NZ_CP023643	Brochothrix thermosphacta strain BII chromosome, complete genome	3	485367-485486	3	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Orphan	TCATCGTTGCAAATTTATTTGCTTACGAGGATAGTATGGG	40	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA|329aa|up_0|NZ_CP023643.1_484373_485360_+,NA|183aa|down_0|NZ_CP023643.1_485755_486304_-	NA|235aa|up_9|NZ_CP023643.1_473879_474584_-	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|152aa|up_8|NZ_CP023643.1_474577_475033_-	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|389aa|up_7|NZ_CP023643.1_475102_476269_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|404aa|up_6|NZ_CP023643.1_476520_477732_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|388aa|up_5|NZ_CP023643.1_478097_479261_-	PRK02936, argD, acetylornithine transaminase	NA|250aa|up_4|NZ_CP023643.1_479261_480011_-	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|401aa|up_3|NZ_CP023643.1_480025_481228_-	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|342aa|up_2|NZ_CP023643.1_481243_482269_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|591aa|up_1|NZ_CP023643.1_482428_484201_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|329aa|up_0|NZ_CP023643.1_484373_485360_+	NA	NA|183aa|down_0|NZ_CP023643.1_485755_486304_-	NA	NA|156aa|down_1|NZ_CP023643.1_486322_486790_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|106aa|down_2|NZ_CP023643.1_487086_487404_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|785aa|down_3|NZ_CP023643.1_487525_489880_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|176aa|down_4|NZ_CP023643.1_489904_490432_-	pfam02674, Colicin_V, Colicin V production protein	NA|201aa|down_5|NZ_CP023643.1_490649_491252_+	cd02140, Frm2-like, nitroreductase family protein	NA|803aa|down_6|NZ_CP023643.1_491327_493736_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|348aa|down_7|NZ_CP023643.1_493748_494792_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|114aa|down_8|NZ_CP023643.1_495117_495459_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|155aa|down_9|NZ_CP023643.1_495553_496018_-	COG0756, Dut, dUTPase [Nucleotide transport and metabolism]
GCF_002442515.1_ASM244251v1	NZ_CP023643	Brochothrix thermosphacta strain BII chromosome, complete genome	4	1899649-1899758	4	CRISPRCasFinder	no	cas3	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Unclear	AACGGCGGTTCACGTCGTAGCTCAGG	26	0	0	NA	NA	NA	1	1	Unclear	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA,NA	NA|266aa|up_9|NZ_CP023643.1_1887243_1888041_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|260aa|up_8|NZ_CP023643.1_1888195_1888975_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|641aa|up_7|NZ_CP023643.1_1888949_1890872_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|226aa|up_6|NZ_CP023643.1_1890886_1891564_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|349aa|up_5|NZ_CP023643.1_1891580_1892627_+	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ	NA|363aa|up_4|NZ_CP023643.1_1892680_1893769_-	cd08172, GlyDH-like, Glycerol_dehydrogenase-like	NA|302aa|up_3|NZ_CP023643.1_1893770_1894676_-	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	cas3|375aa|up_2|NZ_CP023643.1_1894926_1896051_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|78aa|up_1|NZ_CP023643.1_1896065_1896299_+	pfam12725, DUF3810, Protein of unknown function (DUF3810)	NA|454aa|up_0|NZ_CP023643.1_1896345_1897707_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|136aa|down_0|NZ_CP023643.1_1900138_1900546_+	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|486aa|down_1|NZ_CP023643.1_1900538_1901996_+	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|118aa|down_2|NZ_CP023643.1_1902079_1902433_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|372aa|down_3|NZ_CP023643.1_1902437_1903553_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|116aa|down_4|NZ_CP023643.1_1903649_1903997_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|140aa|down_5|NZ_CP023643.1_1904117_1904537_+	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|322aa|down_6|NZ_CP023643.1_1904578_1905544_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|115aa|down_7|NZ_CP023643.1_1905562_1905907_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|149aa|down_8|NZ_CP023643.1_1905896_1906343_+	PRK04069, PRK04069, serine-protein kinase RsbW; Provisional	NA|262aa|down_9|NZ_CP023643.1_1906356_1907142_+	PRK08583, PRK08583, RNA polymerase sigma factor SigB; Validated
GCF_002442515.1_ASM244251v1	NZ_CP023643	Brochothrix thermosphacta strain BII chromosome, complete genome	5	1948869-1948956	5	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Orphan	AGCTTACGAGAATAGTATGGGACG	24	1	5	1948893-1948932|1948893-1948932|1948893-1948932|1948893-1948932|1948893-1948932	NZ_CP023643.1_97358-97397|NZ_CP023643.1_97422-97461|NZ_CP023643.1_2117147-2117186|NZ_CP023643.1_2377633-2377672|NZ_CP023643.1_1476185-1476146	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA|32aa|up_1|NZ_CP023643.1_1946832_1946928_-,NA|197aa|down_1|NZ_CP023643.1_1951050_1951641_+	NA|451aa|up_9|NZ_CP023643.1_1937991_1939344_+	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|79aa|up_8|NZ_CP023643.1_1939336_1939573_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|294aa|up_7|NZ_CP023643.1_1939569_1940451_+	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase	NA|596aa|up_6|NZ_CP023643.1_1940476_1942264_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|275aa|up_5|NZ_CP023643.1_1942277_1943102_+	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|150aa|up_4|NZ_CP023643.1_1943350_1943800_+	PRK04280, PRK04280, transcriptional regulator ArgR	NA|561aa|up_3|NZ_CP023643.1_1943830_1945513_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|367aa|up_2|NZ_CP023643.1_1945657_1946758_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|32aa|up_1|NZ_CP023643.1_1946832_1946928_-	NA	NA|472aa|up_0|NZ_CP023643.1_1947186_1948602_+	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|430aa|down_0|NZ_CP023643.1_1949668_1950958_+	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|197aa|down_1|NZ_CP023643.1_1951050_1951641_+	NA	NA|380aa|down_2|NZ_CP023643.1_1951851_1952991_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|349aa|down_3|NZ_CP023643.1_1953510_1954557_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|190aa|down_4|NZ_CP023643.1_1954571_1955141_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|613aa|down_5|NZ_CP023643.1_1955192_1957031_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|316aa|down_6|NZ_CP023643.1_1957157_1958105_+	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	NA|314aa|down_7|NZ_CP023643.1_1958763_1959705_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|249aa|down_8|NZ_CP023643.1_1959706_1960453_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|58aa|down_9|NZ_CP023643.1_1960614_1960788_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed
GCF_002442515.1_ASM244251v1	NZ_CP023643	Brochothrix thermosphacta strain BII chromosome, complete genome	6	1981881-1981991	6	CRISPRCasFinder	no	WYL	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Unclear	CCCATACTGTTTTCGTAAGCGAATAAATTCGCAACGAT	38	1	1	1981919-1981953	NZ_CP023643.1_1981800-1981834	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA,NA	NA|148aa|up_9|NZ_CP023643.1_1972710_1973154_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|298aa|up_8|NZ_CP023643.1_1973343_1974237_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|272aa|up_7|NZ_CP023643.1_1974265_1975081_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|437aa|up_6|NZ_CP023643.1_1975103_1976414_+	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|245aa|up_5|NZ_CP023643.1_1976428_1977163_+	PRK00104, scpA, segregation and condensation protein A; Reviewed	NA|209aa|up_4|NZ_CP023643.1_1977162_1977789_+	PRK00135, scpB, segregation and condensation protein B; Reviewed	NA|243aa|up_3|NZ_CP023643.1_1977760_1978489_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|217aa|up_2|NZ_CP023643.1_1978584_1979235_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|604aa|up_1|NZ_CP023643.1_1979313_1981125_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|173aa|up_0|NZ_CP023643.1_1981129_1981648_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|191aa|down_0|NZ_CP023643.1_1982336_1982909_+	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|83aa|down_1|NZ_CP023643.1_1982923_1983172_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	WYL|300aa|down_2|NZ_CP023643.1_1983230_1984130_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|126aa|down_3|NZ_CP023643.1_1984186_1984564_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|343aa|down_4|NZ_CP023643.1_1984698_1985727_+	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown]	NA|477aa|down_5|NZ_CP023643.1_1985731_1987162_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|235aa|down_6|NZ_CP023643.1_1987263_1987968_+	pfam01476, LysM, LysM domain	NA|228aa|down_7|NZ_CP023643.1_1988103_1988787_+	PRK00023, cmk, (d)CMP kinase	NA|394aa|down_8|NZ_CP023643.1_1988876_1990058_+	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	NA|437aa|down_9|NZ_CP023643.1_1990169_1991480_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed
GCF_002442515.1_ASM244251v1	NZ_CP023643	Brochothrix thermosphacta strain BII chromosome, complete genome	7	2388417-2388532	7	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Orphan	TGTCTATTTAGAACTTAAATTTCAGGTCT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA,NA	NA|203aa|up_9|NZ_CP023643.1_2376526_2377135_+	cd07995, TPK, Thiamine pyrophosphokinase	NA|546aa|up_8|NZ_CP023643.1_2378386_2380024_+	cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog	NA|63aa|up_7|NZ_CP023643.1_2380188_2380377_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|121aa|up_6|NZ_CP023643.1_2380642_2381005_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|539aa|up_5|NZ_CP023643.1_2381077_2382694_+	TIGR03599, YloV, DAK2 domain fusion protein YloV	NA|687aa|up_4|NZ_CP023643.1_2382766_2384827_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|192aa|up_3|NZ_CP023643.1_2384930_2385506_+	PRK04424, PRK04424, transcription factor FapR	NA|337aa|up_2|NZ_CP023643.1_2385535_2386546_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|312aa|up_1|NZ_CP023643.1_2386538_2387474_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|249aa|up_0|NZ_CP023643.1_2387474_2388221_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|79aa|down_0|NZ_CP023643.1_2388968_2389205_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|234aa|down_1|NZ_CP023643.1_2389290_2389992_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1188aa|down_2|NZ_CP023643.1_2390008_2393572_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|331aa|down_3|NZ_CP023643.1_2393596_2394589_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|312aa|down_4|NZ_CP023643.1_2394936_2395872_+	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA	NA|263aa|down_5|NZ_CP023643.1_2395858_2396647_+	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|320aa|down_6|NZ_CP023643.1_2396794_2397754_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|233aa|down_7|NZ_CP023643.1_2397798_2398497_+	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|409aa|down_8|NZ_CP023643.1_2398677_2399904_+	cd06174, MFS, Major Facilitator Superfamily	NA|89aa|down_9|NZ_CP023643.1_2399903_2400170_+	pfam09860, DUF2087, Uncharacterized protein conserved in bacteria (DUF2087)
GCF_002442515.1_ASM244251v1	NZ_CP023643	Brochothrix thermosphacta strain BII chromosome, complete genome	8	2545240-2546991	8,1,1	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,csn2,cas2,cas1,cas9	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	Type II-C,Type II-B,Type II-A	GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC,GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC,GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	26,26,25	26	TypeII-C,TypeII-B,TypeII-A	WYL,DEDDh,csa3,cas3,DinG,csn2,cas2,cas1,cas9	NA|126aa|up_7|NZ_CP023643.1_2537298_2537676_-,NA|72aa|up_3|NZ_CP023643.1_2541892_2542108_-,NA|266aa|up_1|NZ_CP023643.1_2542612_2543410_+,NA|124aa|down_5|NZ_CP023643.1_2555997_2556369_-	NA|190aa|up_9|NZ_CP023643.1_2531677_2532247_-	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	DEDDh|1440aa|up_8|NZ_CP023643.1_2532588_2536908_-	PRK00448, polC, DNA polymerase III PolC; Validated	NA|126aa|up_7|NZ_CP023643.1_2537298_2537676_-	NA	NA|544aa|up_6|NZ_CP023643.1_2537812_2539444_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|517aa|up_5|NZ_CP023643.1_2539824_2541375_+	cd16390, ParB_N_Srx_like, uncharacterized family distantly related to the N-terminal domain of the ParB/Srx superfamily	NA|146aa|up_4|NZ_CP023643.1_2541440_2541878_-	PRK10514, PRK10514, putative acetyltransferase; Provisional	NA|72aa|up_3|NZ_CP023643.1_2541892_2542108_-	NA	NA|121aa|up_2|NZ_CP023643.1_2542269_2542632_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|266aa|up_1|NZ_CP023643.1_2542612_2543410_+	NA	NA|540aa|up_0|NZ_CP023643.1_2543471_2545091_-	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	csn2|228aa|down_0|NZ_CP023643.1_2547049_2547733_-	TIGR01866, CRISPR-associated_Csn2_family_protein, CRISPR type II-A/NMEMI-associated protein Csn2	cas2|106aa|down_1|NZ_CP023643.1_2547729_2548047_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|291aa|down_2|NZ_CP023643.1_2548058_2548931_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1340aa|down_3|NZ_CP023643.1_2548946_2552966_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|731aa|down_4|NZ_CP023643.1_2553534_2555727_-	pfam10593, Z1, Z1 domain	NA|124aa|down_5|NZ_CP023643.1_2555997_2556369_-	NA	NA|434aa|down_6|NZ_CP023643.1_2556918_2558220_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|567aa|down_7|NZ_CP023643.1_2558481_2560182_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|423aa|down_8|NZ_CP023643.1_2560203_2561472_-	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP	NA|380aa|down_9|NZ_CP023643.1_2561488_2562628_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
