The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	27282	78582	4107128	tRNA,transposase	Synechococcus_phage(25.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28313_28649_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28673_29108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29140_30358_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30363_30861_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31068_32004_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32213_33005_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33047_34469_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814398.1|35569_36760_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37009_37921_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37922_40061_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40057_40597_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40600_41329_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41315_42209_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42279_42675_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42684_43215_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43343_43643_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43660_44611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45197_45746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45717_45954_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46081_46975_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48144_49392_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49388_50003_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50138_51089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51131_52388_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53619_54354_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54359_54950_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54974_55664_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55660_56422_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56501_57401_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57494_58445_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59245_60472_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60471_60891_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61074_62016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62439_63414_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63470_64052_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64064_64367_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64485_65544_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65578_66850_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67479_68661_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69082_70033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70126_70441_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71633_73541_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73702_74323_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74354_74936_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75024_75276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75277_76120_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76225_77635_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77631_78582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	215654	331318	4107128	tRNA,protease,transposase	uncultured_Caudovirales_phage(12.5%)	97	NA	NA
WP_033455792.1|215654_218450_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219043_221887_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222057_222777_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222815_223364_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223518_224418_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224442_225393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225610_226306_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226322_227735_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227847_229278_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229319_231233_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231551_232118_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232208_233210_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233324_234275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235307_236258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236355_237153_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238102_238513_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239534_240278_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240321_241365_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241535_243638_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245048_246005_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246023_246515_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246511_247867_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247867_248566_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_003814339.1|249515_250565_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250670_251612_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251608_253498_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253584_254223_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254365_255751_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255681_256218_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256369_257761_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257777_258758_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258893_259877_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259941_260841_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260947_262702_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262709_263834_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263847_264828_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265558_266509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267068_267614_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267739_269317_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269332_270487_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270500_270626_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270622_272374_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272370_274050_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274112_274661_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275803_276082_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277125_278076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278062_278278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278353_278515_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279181_279631_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279640_280252_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280410_281259_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281284_282667_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282731_283373_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283512_283971_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|283995_284772_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284825_285962_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285958_286909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287006_287633_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287655_288582_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288590_290177_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290173_291178_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_010929724.1|292268_293270_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293340_294150_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294227_296087_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296215_297418_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297531_298413_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299915_300476_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300535_301486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301677_301965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302053_303004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929727.1|303000_303999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815019.1|304041_304545_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929728.1|304548_305439_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815015.1|305661_306825_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815013.1|306921_307842_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815011.1|307845_308811_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815010.1|308807_309602_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_010929729.1|309595_310300_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_010929730.1|313663_314527_+	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929731.1|314529_315699_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814996.1|315739_317389_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_003814993.1|317390_317825_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814990.1|317849_318251_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929732.1|318344_319970_-	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_010929733.1|320209_321493_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_003814984.1|321509_322163_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929734.1|322159_323008_-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814980.1|323124_323289_+	rubredoxin	NA	NA	NA	NA	NA
WP_010927118.1|323376_323982_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_010929735.1|323974_324376_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_003820560.1|324389_325343_+	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929736.1|325339_326515_+	dihydroorotase	NA	NA	NA	NA	NA
WP_010929737.1|326634_327375_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929738.1|327411_328245_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929739.1|328241_329420_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_003814960.1|329516_330245_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_005013747.1|330367_331318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	390838	448346	4107128	transposase	Orpheovirus(16.67%)	49	NA	NA
WP_005012067.1|390838_391789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391925_392843_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392839_393088_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393084_394290_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394362_395358_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395380_396601_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396597_397242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398972_399782_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400086_401040_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401138_402122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402048_402750_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402798_403569_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403565_404744_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404911_406618_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406614_407511_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407551_409141_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409190_410183_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410251_410851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411311_412292_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412367_413318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413406_414321_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414317_414977_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415066_415990_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|415995_416451_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416447_417551_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417506_417779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417738_419358_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419354_420413_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420542_421037_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421129_422107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422302_423508_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423504_425016_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425031_426345_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426535_426715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427124_427859_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430303_431254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431385_431784_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432194_432665_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432753_433098_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433197_434598_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436386_436905_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814691.1|437965_439198_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439190_439976_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440042_441014_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441024_442002_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442127_443300_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443326_444355_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444420_445614_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447395_448346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	619720	702036	4107128	tRNA,terminase,tail,transposase	uncultured_Caudovirales_phage(16.67%)	81	NA	NA
WP_005012067.1|619720_620671_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621369_621753_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621810_622413_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622430_622832_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622947_623859_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623855_624437_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625231_625966_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626006_627056_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627203_627782_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628168_629146_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629239_633634_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633834_634683_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634841_635654_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635709_636660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636758_637559_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637620_638004_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638015_639368_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639655_639985_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|639987_640737_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640919_641840_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641886_642099_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642121_642544_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642560_643661_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003814203.1|645348_646188_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646209_647082_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647172_648267_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648560_649511_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649584_650526_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|650609_650969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|651350_652388_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|652704_654045_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931463.1|654054_654507_-	membrane protein	NA	NA	NA	NA	NA
WP_023995141.1|655848_656874_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656914_657154_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657223_658813_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658812_659361_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659441_660014_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660032_660944_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661016_661985_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662107_663181_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663185_665006_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_033446132.1|666119_666455_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666588_667239_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667260_668679_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668748_669504_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669472_670231_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670241_671123_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671139_671847_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671849_672608_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672817_674560_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674552_675077_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675116_675911_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676078_677152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677250_678201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678452_678659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678730_679342_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679896_680148_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680140_680830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681086_682037_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682676_683162_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683148_684426_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684428_685847_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685875_686931_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686936_687179_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687301_687904_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688332_689283_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689957_690209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690271_690754_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690767_690956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690955_691351_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691347_691746_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691742_692165_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692172_692673_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692927_693446_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693455_693785_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693802_694093_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694118_696731_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696740_697100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697167_697701_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697697_698087_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698079_702036_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 5
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	853000	913875	4107128	transposase	Vibrio_phage(25.0%)	50	NA	NA
WP_010929591.1|853000_853951_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|853968_854523_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854524_854959_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|854955_855390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855373_856177_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856193_857009_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|857005_857821_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|857967_858669_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858696_860655_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860737_861688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930031.1|862699_863806_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863818_866932_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866928_868422_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868436_869108_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869151_869646_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869786_870434_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870537_872586_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872582_874595_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874620_875955_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876063_877056_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877122_879207_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879231_880203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880331_881363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|881366_882518_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882688_883612_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883689_884514_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884710_885727_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885923_886907_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888505_889894_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889924_890914_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891024_892257_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892538_893339_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893361_895593_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896380_896827_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896848_897595_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897738_898716_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899349_899961_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|899954_901172_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901312_902263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|902361_903312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903308_904028_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904148_906308_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906398_906668_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906756_906963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|906961_907489_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907507_908287_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908454_909471_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909543_910035_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910045_911761_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912924_913875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	934622	1000521	4107128	transposase	Bacillus_virus(15.38%)	59	NA	NA
WP_005012067.1|934622_935573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935625_935847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936006_936219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936338_937457_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937553_937769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|937962_938214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938325_939276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939272_939656_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939710_941525_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941674_942502_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942547_943528_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943524_943737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943733_944915_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945078_945813_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945814_948427_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948562_950476_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951091_951502_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951599_952685_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952783_953734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953730_954705_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954829_955741_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956017_956410_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_010930090.1|957518_957701_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958473_959655_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959870_960548_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960544_961270_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961395_961977_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962347_965029_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965031_966162_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966154_967240_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967326_968226_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968222_969551_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969565_970237_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970424_972140_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972141_972501_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972692_973007_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973049_974270_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974266_975208_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975204_976194_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976228_976813_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976911_977862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977942_978854_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978914_980060_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980079_980994_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981065_981815_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981814_982744_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|982987_984814_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984896_985538_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985727_986762_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988598_989663_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990460_991369_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992856_994131_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994284_994665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994672_995545_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995850_996231_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996441_997167_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997262_998213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998317_999367_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999504_1000521_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	1046222	1086861	4107128	tRNA,holin,transposase	uncultured_Mediterranean_phage(50.0%)	34	NA	NA
WP_005012067.1|1046222_1047173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047471_1048209_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048644_1048968_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049002_1049563_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049682_1050558_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050570_1051518_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051619_1051913_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051939_1053997_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054011_1054512_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054585_1056292_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057155_1058208_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058260_1058650_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058658_1059291_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059390_1060407_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061237_1062245_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062241_1063885_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063881_1064769_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064909_1065383_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065372_1066395_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066391_1067819_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068756_1069773_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070105_1071041_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071090_1072971_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073037_1073382_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073525_1074662_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074658_1075732_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075889_1077326_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077416_1078058_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078393_1079410_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081452_1082403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083604_1085026_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085288_1086005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086089_1086407_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086447_1086861_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 8
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	1095926	1178244	4107128	tRNA,transposase	Planktothrix_phage(18.18%)	56	NA	NA
WP_005013747.1|1095926_1096877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097244_1098021_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098065_1098923_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1098944_1099961_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100095_1101136_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101330_1103412_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103647_1105141_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105371_1106166_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106386_1107745_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107741_1108584_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108602_1110489_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110430_1110682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110726_1111359_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111377_1111980_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112131_1113082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113662_1114370_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114728_1115715_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115854_1116868_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117911_1118862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1118973_1119432_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119468_1120782_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120799_1121171_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121167_1122631_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122771_1123500_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123481_1126331_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930184.1|1127659_1128484_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128483_1129362_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130266_1131382_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131410_1132205_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132201_1134067_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_010930189.1|1134773_1135076_-	membrane protein	NA	NA	NA	NA	NA
WP_010926447.1|1136644_1137400_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1137429_1138534_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1138636_1140337_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1140318_1141296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1141305_1142586_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1142578_1143274_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1143307_1144135_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1144416_1147647_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1148381_1152308_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1154207_1156004_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156003_1156972_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157041_1157887_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1157954_1158509_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158555_1159506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159604_1160237_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160401_1162684_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162838_1165535_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165660_1166149_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168559_1171430_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171475_1172690_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172919_1174347_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174444_1175536_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175548_1176307_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176394_1177297_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177293_1178244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	1217786	1299693	4107128	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_076879566.1|1217786_1218737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1218823_1219774_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1219770_1220721_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1220980_1222009_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1222088_1223387_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1223383_1223965_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1224277_1228324_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1228564_1236226_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1236222_1237173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1238311_1238785_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1238924_1239545_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1239680_1240481_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1240535_1241627_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1241648_1242092_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1242120_1242753_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1242863_1243280_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1243272_1243965_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1244071_1244446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1244522_1245332_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1245427_1246372_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1246410_1247382_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1247472_1247910_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1247968_1248850_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1249853_1250714_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1250746_1252129_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1252125_1253145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1253517_1254012_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1254019_1254760_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1254840_1256445_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1256484_1257273_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1257398_1259564_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1260444_1261257_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1261269_1261578_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1261695_1263426_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1263427_1264630_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1264702_1265371_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1265492_1265960_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1266095_1267478_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1267474_1268599_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1268595_1271232_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931041.1|1276343_1276955_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1277177_1278638_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1278734_1280327_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1280680_1280938_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1280939_1282280_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1282375_1283065_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1283077_1284508_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1286232_1287054_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1287064_1288636_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1288664_1289642_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1289668_1290472_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1290468_1291263_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1291270_1292506_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1292519_1292933_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1293682_1294633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1295253_1296981_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1297092_1298451_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1298742_1299693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	1419082	1471233	4107128	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1419082_1420033_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1420199_1420553_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1420565_1420928_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420969_1421395_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1421597_1422854_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1423052_1424033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1424182_1425424_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1425522_1426473_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1426481_1427177_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429996_1430596_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1430606_1432772_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432795_1434580_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1434579_1434669_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1435363_1435636_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1435635_1437702_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1437698_1438649_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1438747_1439698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439813_1440146_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1440142_1440829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1440815_1441775_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1441807_1444177_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1444176_1444809_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1444910_1446251_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1446297_1447653_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1447943_1448180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1448367_1448685_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448957_1449473_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1449743_1450499_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450837_1451044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1451051_1451711_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1452005_1454210_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1454320_1455544_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1455666_1456641_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1456708_1457902_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1457916_1458717_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1458713_1460570_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1460566_1461172_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1461190_1462576_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1463301_1464528_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1464616_1465399_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1465497_1466448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1466474_1467248_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1467259_1468501_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1470282_1471233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	1551762	1628247	4107128	transposase	Planktothrix_phage(16.67%)	60	NA	NA
WP_005012067.1|1551762_1552713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552894_1553647_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553715_1554375_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554371_1555100_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555112_1557392_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557416_1557620_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557661_1558294_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558429_1559347_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559343_1560057_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560294_1561065_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561069_1561669_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1561913_1563404_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563462_1563747_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1564312_1565239_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565375_1566116_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566282_1567659_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567840_1568746_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570397_1572200_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1572317_1572968_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573066_1574017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1574038_1575259_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1575444_1576857_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1576920_1577988_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577987_1579475_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1579484_1580429_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1580588_1581287_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1581364_1582270_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1582289_1583240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248220.1|1583338_1584133_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_010930454.1|1584137_1585808_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_010930455.1|1585931_1586981_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811187.1|1587302_1588079_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930456.1|1588143_1589046_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930457.1|1590339_1591143_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930458.1|1593836_1594223_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_033446218.1|1594238_1596329_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_003811203.1|1596380_1597334_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_010930460.1|1597348_1598236_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930461.1|1598373_1599900_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003811209.1|1599998_1600499_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_019247170.1|1600822_1602778_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930465.1|1605055_1605841_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930466.1|1606696_1607467_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486073.1|1607466_1608207_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930468.1|1608248_1609418_+	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_010930469.1|1609449_1611534_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003811224.1|1611530_1612421_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930470.1|1612417_1613515_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_010930471.1|1613537_1614827_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|1614838_1615864_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930473.1|1615860_1617918_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_023852812.1|1617931_1619107_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1619188_1620139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620197_1620971_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620963_1622520_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622516_1623467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624792_1625395_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625634_1626336_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626329_1627112_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627296_1628247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	1832535	1891804	4107128	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1832535_1833486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1833610_1834420_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1834620_1835571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836844_1838062_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1839118_1840021_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1840097_1840970_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1841100_1841469_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1841526_1842573_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842768_1844025_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1844029_1845367_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1845516_1846473_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1846575_1847508_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1847623_1847944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1847936_1848296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1848343_1849918_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849970_1850915_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1850932_1851763_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1851755_1853390_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1853386_1854742_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1855648_1857226_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1857229_1858504_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1858601_1858976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1860691_1861825_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861862_1862468_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1862464_1863283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1863354_1865979_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865965_1866220_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1866286_1866868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1867171_1867432_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1867597_1868221_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1868220_1868994_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868990_1870199_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1870224_1870698_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870771_1871722_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871820_1872771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872869_1874219_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874984_1875740_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875831_1878714_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1879036_1879462_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1879489_1880638_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1880634_1881141_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1881156_1882443_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1882492_1883788_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883789_1884428_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1884433_1885591_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1885617_1886973_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886976_1888047_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1888185_1888422_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1888509_1889616_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1889581_1890886_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1890904_1891804_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 13
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	1902044	1946363	4107128	transposase	Staphylococcus_phage(25.0%)	41	NA	NA
WP_005013747.1|1902044_1902995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1903093_1904044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1904243_1905329_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1905344_1906106_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1906102_1907026_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1907124_1907649_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1907657_1908401_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1908496_1908736_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1908749_1908902_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908987_1910478_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1910569_1911508_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1911504_1911681_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1911683_1912346_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913967_1914111_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1914107_1915082_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1915248_1916199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1916195_1917470_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1917573_1918767_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1918763_1919417_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1919413_1920850_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920837_1921197_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1922169_1923120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1924165_1926031_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1926288_1927809_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1927896_1928547_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1929495_1930791_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1930812_1931697_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1931795_1932671_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1932660_1933017_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1933147_1934122_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1934251_1934431_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1934528_1935053_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1935063_1935900_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1936012_1936384_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|1936946_1938638_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1938686_1939367_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1939613_1940078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247659.1|1941187_1941835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1941908_1943726_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1943809_1944760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1945412_1946363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	2149870	2221672	4107128	tRNA,protease,transposase	Lake_Baikal_phage(10.53%)	59	NA	NA
WP_010930556.1|2149870_2151175_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2151279_2151933_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2151935_2153246_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2153424_2154003_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2154114_2154315_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2154660_2155227_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2155310_2155514_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2155820_2156141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2156182_2156464_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2156538_2157795_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2158177_2158507_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2160077_2160899_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2160898_2162038_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2162044_2162941_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2162955_2164863_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2165221_2167834_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812548.1|2170182_2171391_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2171652_2172027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076879626.1|2173070_2175065_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175124_2176090_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176079_2178941_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178943_2179450_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179554_2180763_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180764_2181703_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181864_2182338_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182334_2183285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2183395_2183836_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183964_2185194_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2185232_2186054_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2186107_2187259_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2187350_2187839_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2190389_2192939_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2195847_2196048_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2196079_2196241_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2196298_2196637_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2196785_2197736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2198509_2199178_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2199159_2201115_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2201357_2202107_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2202119_2202983_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202986_2204402_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2204535_2205264_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2205402_2205603_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2205778_2206177_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2206200_2207601_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2207719_2208472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2208760_2209438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2209464_2210244_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2210240_2211125_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2211142_2211922_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2211906_2212665_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2212802_2213438_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2213705_2214722_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2214819_2215860_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215994_2217287_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2218646_2219030_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2219047_2219635_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2219672_2220623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2220721_2221672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	2476916	2535159	4107128	tRNA,transposase	Planktothrix_phage(28.57%)	52	NA	NA
WP_005012067.1|2476916_2477867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478346_2479003_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930386.1|2480686_2481316_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481527_2482622_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482766_2483579_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2483582_2485166_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2485336_2486467_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486653_2487730_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487811_2488462_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488476_2489880_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490163_2490982_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2490978_2491683_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492582_2493698_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493731_2494106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494128_2495286_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495298_2495532_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496166_2499136_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499150_2499360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499511_2500141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2500137_2502195_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502251_2502932_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502928_2503489_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503495_2504593_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504745_2505339_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505335_2506628_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506641_2507184_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507193_2508030_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508063_2509125_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509166_2510219_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510234_2510537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510678_2511629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2511807_2513502_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513498_2514584_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514631_2515531_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515541_2516186_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517207_2520450_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520460_2521615_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521841_2522804_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2522902_2523853_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523951_2524902_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2524911_2525601_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525660_2526098_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526143_2527037_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527084_2528257_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528253_2529408_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2529604_2529955_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2529944_2530379_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530395_2531346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531493_2531961_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2531941_2533099_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533164_2534091_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534208_2535159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	2577437	2643936	4107128	transposase	uncultured_Caudovirales_phage(40.0%)	55	NA	NA
WP_005012067.1|2577437_2578388_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578757_2579330_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579332_2580343_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580335_2580836_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580846_2581188_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581256_2581991_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582007_2582277_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582299_2583088_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583134_2584151_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584367_2585810_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585988_2587608_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587728_2589549_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589627_2591160_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591193_2592840_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2592909_2593932_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593949_2595083_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595085_2595775_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595774_2596560_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596603_2597368_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597406_2598828_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2598893_2599598_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599645_2600065_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600077_2600485_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817172.1|2601504_2601795_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601812_2602295_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606800_2607955_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608260_2609277_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609523_2610312_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610378_2611059_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611055_2611826_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611924_2612875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612930_2613848_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2613858_2615037_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615056_2616052_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617640_2618249_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618236_2619277_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619294_2620257_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620253_2621447_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621443_2622241_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622266_2623253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623271_2625311_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625512_2626193_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626206_2627118_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627114_2627693_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627831_2628737_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628744_2632164_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632151_2634752_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635707_2636340_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636733_2637492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637488_2638691_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2638878_2639829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640736_2641882_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2641868_2642624_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642740_2642920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642985_2643936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	2839790	2912798	4107128	protease,transposase	uncultured_Mediterranean_phage(22.22%)	52	NA	NA
WP_005012067.1|2839790_2840741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2840874_2841981_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841991_2843089_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843233_2844439_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844445_2844967_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844963_2845446_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845451_2845703_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845683_2846169_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846303_2849765_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849782_2850667_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850676_2851108_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851354_2851858_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851935_2853336_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853410_2854286_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854282_2855290_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855757_2856063_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856153_2856744_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856934_2857951_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858142_2860479_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860561_2860996_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2862142_2863093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863089_2863884_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863915_2864620_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864694_2865495_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865491_2865899_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865895_2866537_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866529_2868530_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869790_2871122_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931105.1|2873773_2874040_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874747_2875086_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879637_2880240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880336_2881626_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881683_2882415_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882411_2883215_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883211_2884300_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884296_2885226_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885374_2886520_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931110.1|2887821_2891643_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891799_2892468_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892472_2894146_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894164_2895484_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895488_2897804_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2897859_2900028_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900024_2905205_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905303_2905618_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2905845_2906091_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906185_2906704_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906803_2908009_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908124_2909522_-	chloride channel protein	NA	NA	NA	NA	NA
WP_101631021.1|2909638_2910184_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910288_2911680_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2911847_2912798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	2922444	2982194	4107128	transposase	Vibrio_phage(16.67%)	53	NA	NA
WP_005012067.1|2922444_2923395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925778_2926891_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926947_2927898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2928106_2928328_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2928541_2929948_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2929944_2931249_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2931245_2932433_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2932649_2933102_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2933104_2933569_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2933648_2935328_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2935432_2936410_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2936489_2937458_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2937478_2938852_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2938848_2939685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2939801_2940257_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2940272_2940545_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2940637_2940961_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2941008_2941389_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2941608_2942406_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2942562_2944425_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2944474_2945386_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2945390_2945657_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_162292020.1|2945743_2946535_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2946747_2947713_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2947883_2948894_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2949041_2950193_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2951335_2952808_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2952818_2953229_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2953292_2954339_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2954445_2955324_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2955337_2956534_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|2956595_2958287_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|2958283_2959234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2959354_2960251_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962528_2964754_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964918_2966007_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965963_2966617_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966664_2967462_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967993_2968944_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969024_2970173_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970229_2971180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971278_2971584_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971612_2972047_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972048_2973293_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973289_2974000_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974014_2974926_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975288_2975693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975689_2976148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976154_2977063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977059_2977926_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977912_2978740_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978750_2979878_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980955_2982194_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	2988174	3051264	4107128	transposase	Bacillus_virus(28.57%)	54	NA	NA
WP_023852714.1|2988174_2989125_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989227_2989848_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989951_2990692_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991826_2992951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992996_2993365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993606_2994557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995592_2996135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996520_2997471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997467_2998376_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998502_2999339_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2999851_3000961_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001022_3001973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3002164_3002947_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3002960_3003725_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3003737_3005084_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3005109_3006039_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3006154_3007060_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3007077_3008277_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3008349_3009042_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_003809026.1|3012726_3013095_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3013381_3014308_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3014351_3015362_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3015358_3015793_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3016918_3017707_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3017716_3018499_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3018502_3019594_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3019699_3021175_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3021316_3021865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3021880_3022342_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3022442_3023432_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3023730_3024432_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3024470_3025844_-	amidase	NA	NA	NA	NA	NA
WP_010931177.1|3028054_3028957_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3028904_3030125_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3030121_3030631_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3030620_3031316_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3031386_3032256_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930208.1|3032604_3033555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486089.1|3034415_3035105_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_003818691.1|3035881_3036844_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486091.1|3036847_3037708_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808978.1|3037701_3038094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486094.1|3040748_3041546_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486095.1|3041579_3042359_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003818698.1|3043280_3044030_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486097.1|3044037_3044895_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247597.1|3044935_3045499_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247598.1|3045529_3045826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486098.1|3045906_3046710_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818702.1|3046730_3047927_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247599.1|3047929_3048931_-	amidase	NA	NA	NA	NA	NA
WP_019249309.1|3049283_3049454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486100.1|3049548_3050211_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3050313_3051264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	3402805	3549189	4107128	tRNA,transposase	Acinetobacter_phage(17.65%)	112	NA	NA
WP_005012067.1|3402805_3403756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404521_3405616_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405608_3406943_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406896_3407580_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3407605_3408769_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3408765_3409767_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409766_3410639_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410635_3411385_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411381_3412173_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412169_3413309_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413584_3414370_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414403_3415186_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415189_3415579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416718_3417582_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417617_3418706_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_019247959.1|3420005_3422984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423910_3424789_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426737_3427688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427684_3428152_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428194_3428965_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428985_3429786_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429796_3431206_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431300_3432086_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432325_3433342_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433449_3433842_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433979_3434660_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434664_3435636_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435731_3436682_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3438186_3438888_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3438887_3440312_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3441381_3442722_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3442837_3444601_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444712_3445591_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445703_3446519_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446522_3446774_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814254.1|3448204_3448426_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450786_3451704_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452201_3453410_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453489_3455061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455178_3456114_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456302_3457247_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3457814_3463532_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463537_3464665_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464720_3465347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465618_3466635_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466730_3467441_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467437_3468427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468522_3470154_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470156_3470894_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852703.1|3472270_3473410_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473406_3474066_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474137_3474770_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3474799_3475318_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814312.1|3476483_3477338_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477339_3478242_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479464_3480415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482169_3483159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483334_3484123_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484119_3485151_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485169_3485733_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485788_3487309_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487572_3488277_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3488284_3489013_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489127_3489502_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489544_3490834_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3490830_3492000_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491996_3492836_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492895_3493831_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931381.1|3494891_3495854_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495885_3496245_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496369_3497272_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497273_3499046_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499080_3499857_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815365.1|3502981_3503302_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3503374_3504256_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3504372_3504615_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3504752_3505223_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3505235_3505775_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3505809_3507351_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3507449_3508355_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3508397_3509798_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3509807_3510230_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3510412_3511297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3511372_3512449_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3512755_3514858_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3514900_3516970_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3517068_3518019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518147_3519281_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519324_3520230_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520232_3521933_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521929_3522850_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522857_3523835_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523893_3524928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3526902_3527139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3527265_3528129_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528217_3529039_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529118_3529856_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3529852_3530845_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3530997_3531621_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531665_3532814_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3535136_3536087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536427_3537378_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537476_3538427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538723_3539221_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539262_3541038_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541045_3541912_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541918_3542653_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3543822_3544617_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544906_3545497_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545530_3546859_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546933_3548079_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548190_3549189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017160	Bordetella pertussis strain J223 chromosome, complete genome	4107128	4006196	4071108	4107128	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4006196_4006682_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006770_4006908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006900_4007881_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008147_4008957_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008996_4009677_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009670_4010129_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010140_4010503_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010585_4011269_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011324_4011633_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011651_4011966_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011962_4014437_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014444_4015836_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015832_4016018_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015996_4016698_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016694_4017516_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017496_4018621_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018613_4019633_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019838_4020729_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020973_4021765_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021847_4022222_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022199_4023609_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023601_4024984_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025318_4026923_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027000_4027972_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027982_4028909_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029299_4030250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030419_4031646_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031845_4032712_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032704_4033667_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033767_4034718_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034816_4035767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035865_4036816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036812_4038306_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038302_4041410_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041406_4044475_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044471_4045722_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045902_4046655_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046696_4047341_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047349_4048330_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048429_4049173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049255_4049603_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049700_4050543_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050587_4051475_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051501_4051690_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051787_4053245_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053231_4054758_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054776_4055244_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055243_4056266_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056386_4057127_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057181_4058282_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058283_4059474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059593_4060610_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060928_4061600_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061596_4062505_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062716_4063364_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067224_4068292_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068302_4069112_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069201_4069975_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4070157_4071108_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
