The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	27282	79602	4106343	tRNA,transposase	Synechococcus_phage(25.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814398.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37011_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41317_42211_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43345_43645_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929589.1|45198_45747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45718_45955_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46082_46976_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48145_49393_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49389_50004_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50139_51090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51132_52389_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53620_54355_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54360_54951_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54975_55665_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55661_56423_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56502_57402_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57495_58446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59246_60473_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60472_60892_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61075_62017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62440_63415_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63471_64053_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64065_64368_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64486_65545_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65579_66851_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67480_68662_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69083_70034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70127_70442_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71634_73542_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73703_74324_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74355_74937_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75025_75277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75278_76121_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76226_77636_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77632_78583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78657_79602_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	107425	175249	4106343	tRNA,transposase	Bacillus_phage(22.22%)	56	NA	NA
WP_010929626.1|107425_108376_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109274_110468_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110549_111179_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111240_111924_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111933_113616_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113903_114251_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114341_114659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114941_115958_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116033_116834_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116830_117706_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117716_119009_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119051_120092_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120197_121019_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121119_122070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122168_123074_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123070_123904_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124740_125751_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125747_126137_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127030_128284_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128374_130075_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130501_131149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131147_132587_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132697_132982_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133009_133888_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135154_136105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|136523_138032_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138778_142741_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142793_143576_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143663_144887_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144870_145803_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145808_146621_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|147933_148905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149023_149806_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150572_151553_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151549_152278_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152302_152734_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152835_153711_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|153762_154962_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|155066_155528_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155633_157031_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157027_157705_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157760_159071_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159082_159781_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159944_160721_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160886_161909_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162137_162773_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_023995348.1|162778_164332_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164890_165841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167284_168187_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168164_168794_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169076_170507_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170540_171170_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171218_172826_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172850_173534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173615_174092_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174298_175249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	178631	236268	4106343	tRNA,transposase,protease	Klosneuvirus(14.29%)	48	NA	NA
WP_010929666.1|178631_180710_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180959_181232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181333_182419_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182422_184327_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184323_187998_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188058_188622_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188629_189052_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189079_189499_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189527_189974_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190100_190598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190752_193023_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193098_194304_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194402_195353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195455_196091_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196087_196981_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197375_198476_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198557_198932_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198991_201856_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202000_202741_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202810_204022_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204050_205019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205632_206583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206739_207063_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207167_208208_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208213_208993_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209038_209335_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209360_209636_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209692_210337_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210336_211023_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211221_212004_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212054_212780_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212811_214161_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214272_215205_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215662_218458_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219051_221895_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222065_222785_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222823_223372_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223526_224426_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224450_225401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225619_226315_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226331_227744_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227856_229287_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229328_231242_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231560_232127_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232217_233219_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233333_234284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234370_235321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235317_236268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	250682	303018	4106343	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_003814337.1|250682_251624_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251620_253510_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253596_254235_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254377_255763_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255693_256230_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256381_257773_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257789_258770_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258905_259889_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259953_260853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260959_262714_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262721_263846_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263859_264840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265570_266521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267080_267626_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267751_269329_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269344_270499_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270512_270638_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270634_272386_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272382_274062_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274124_274673_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275815_276094_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277137_278088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|278074_278290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278365_278527_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279193_279643_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279652_280264_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280422_281271_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281296_282679_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282743_283385_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283524_283983_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284007_284784_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284837_285974_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285970_286921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287019_287646_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287668_288595_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288603_290190_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290186_291191_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291390_292251_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292282_293284_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293354_294164_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294241_296101_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296229_297432_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297545_298427_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299929_300490_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300549_301500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301691_301979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302067_303018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	390853	448362	4106343	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390853_391804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391940_392858_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392854_393103_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393099_394305_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394377_395373_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395395_396616_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396612_397257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398987_399797_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400101_401055_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401153_402137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402063_402765_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402813_403584_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403580_404759_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404926_406633_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406629_407526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407566_409156_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409205_410198_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410266_410866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411326_412307_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412382_413333_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413421_414336_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414332_414992_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415081_416005_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416010_416466_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416462_417566_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417524_417794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417753_419373_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419369_420428_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420557_421052_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421144_422122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422317_423523_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423519_425031_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425046_426360_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426550_426730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427139_427874_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430318_431269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431400_431799_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432209_432680_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432768_433113_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433212_434613_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436401_436920_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437030_437786_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437981_439214_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439206_439992_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440058_441030_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441040_442018_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442143_443316_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443342_444371_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444436_445630_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447411_448362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	589367	650558	4106343	transposase,protease	uncultured_Mediterranean_phage(40.0%)	54	NA	NA
WP_005013747.1|589367_590318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590793_591684_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591680_592502_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592702_593194_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593212_594286_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594332_595436_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595511_596132_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596152_596662_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596716_596968_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597031_598165_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598172_598559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598555_601075_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601503_601842_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601838_602345_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602406_603207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603317_604259_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604352_605888_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607567_609418_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609421_610255_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610254_611196_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611447_612419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612560_614849_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615155_616064_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_062810229.1|617157_618819_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618890_619601_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619749_620700_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621398_621782_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621839_622442_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622459_622861_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622976_623888_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623884_624466_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625260_625995_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626035_627085_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627232_627811_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628197_629175_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629268_633663_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633863_634712_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634870_635683_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635738_636689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636787_637588_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637649_638033_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638044_639397_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639684_640014_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640016_640766_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640948_641869_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641915_642128_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642150_642573_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642589_643690_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643786_645304_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645379_646219_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646240_647113_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647203_648298_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648591_649542_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649616_650558_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	655882	702073	4106343	tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655882_656908_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656948_657188_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657257_658847_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658846_659395_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659475_660048_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660066_660978_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661051_662020_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662142_663216_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663220_665041_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665117_666068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666156_666492_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666625_667276_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667297_668716_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668785_669541_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669509_670268_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670278_671160_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671176_671884_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671886_672645_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672854_674597_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674589_675114_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675153_675948_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676115_677189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677287_678238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678489_678696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678767_679379_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679933_680185_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680177_680867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681123_682074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682713_683199_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683185_684463_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684465_685884_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685912_686968_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686973_687216_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687338_687941_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688369_689320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689994_690246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690308_690791_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690804_690993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690992_691388_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691384_691783_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691779_692202_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692209_692710_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692964_693483_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693492_693822_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693839_694130_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694155_696768_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696777_697137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697204_697738_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697734_698124_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698116_702073_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	708239	762169	4106343	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708239_709970_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710022_710451_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710453_711134_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711133_711592_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711628_712603_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712619_713936_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713967_714465_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714551_715241_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715240_716290_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716286_717081_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717249_717600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717575_718133_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719262_720213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722350_723580_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723582_725025_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725129_726275_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726306_727104_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727128_728688_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728684_731057_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731166_732270_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732269_732962_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733105_733807_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733791_734169_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734900_735851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736010_736883_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737223_737442_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737481_738861_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738902_740300_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740339_741992_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741995_742880_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742879_743821_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743899_745519_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745685_746501_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746568_747138_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747138_748089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748743_749841_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749874_751140_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751297_752248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752491_753082_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753097_755542_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755661_756633_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756764_757289_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757248_758199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758420_760616_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760688_761096_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761218_762169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	853046	913922	4106343	transposase	Vibrio_phage(25.0%)	51	NA	NA
WP_010929591.1|853046_853997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854014_854569_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854570_855005_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855001_855436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855419_856223_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856239_857055_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|857051_857867_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858013_858715_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858742_860701_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860783_861734_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861954_862623_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862746_863853_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863865_866979_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866975_868469_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868483_869155_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869198_869693_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869833_870481_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870584_872633_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872629_874642_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874667_876002_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876110_877103_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877169_879254_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879278_880250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880378_881410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|881413_882565_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882735_883659_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883736_884561_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884757_885774_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885970_886954_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888552_889941_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889971_890961_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891071_892304_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892585_893386_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893408_895640_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896427_896874_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896895_897642_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897785_898763_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899396_900008_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900001_901219_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901359_902310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|902408_903359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903355_904075_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904195_906355_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906445_906715_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906803_907010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907008_907536_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907554_908334_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908501_909518_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909590_910082_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910092_911808_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912971_913922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	934669	998260	4106343	transposase	Bacillus_virus(15.38%)	57	NA	NA
WP_005012067.1|934669_935620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935672_935894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936053_936266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936385_937504_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937600_937816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938009_938261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938372_939323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939319_939703_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939757_941572_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941721_942549_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942594_943575_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943571_943784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943780_944962_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945125_945860_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945861_948474_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948609_950523_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951138_951549_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_005012067.1|952829_953780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953776_954751_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954875_955787_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956063_956456_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956585_957536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957565_957748_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958520_959702_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959917_960595_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960591_961317_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961442_962024_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962394_965076_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965078_966209_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966201_967287_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967373_968273_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968269_969598_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969612_970284_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970471_972187_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972188_972548_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972739_973054_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973096_974317_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974313_975255_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975251_976241_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976275_976860_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976958_977909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977989_978901_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978961_980107_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980126_981041_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981112_981862_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981861_982791_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983034_984861_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984943_985585_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985774_986809_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988645_989710_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990507_991416_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992903_994178_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994331_994712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994719_995592_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995897_996278_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996488_997214_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997309_998260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	1024372	1082457	4106343	tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1024372_1025323_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025421_1026162_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026356_1028393_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028410_1029421_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029538_1030732_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030761_1031535_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031531_1032722_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032747_1033686_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033682_1036031_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036185_1036827_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038156_1038309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038340_1038889_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038907_1039393_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039570_1040509_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040511_1040829_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040874_1041819_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043499_1044150_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044203_1044539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044535_1045396_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045412_1045694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045767_1046031_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046274_1047225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047523_1048261_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048696_1049020_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049054_1049615_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049735_1050611_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050623_1051571_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051672_1051966_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051992_1054050_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054064_1054565_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054638_1056345_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057208_1058261_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058313_1058703_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058711_1059344_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059443_1060460_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061290_1062298_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062294_1063938_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063934_1064822_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064962_1065436_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065425_1066448_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066444_1067872_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068809_1069826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070158_1071094_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071143_1073024_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073090_1073435_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073579_1074716_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074712_1075786_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075943_1077380_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077470_1078112_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078447_1079464_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081506_1082457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	1086503	1158523	4106343	tRNA,transposase,holin	Planktothrix_phage(18.18%)	56	NA	NA
WP_003819794.1|1086503_1086917_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086918_1087278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087320_1088865_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088948_1089779_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089813_1090968_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091010_1091883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1091999_1094288_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095494_1095959_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095985_1096936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096953_1097091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097303_1098080_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098124_1098982_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099003_1100020_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100154_1101195_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101389_1103471_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103706_1105200_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105430_1106225_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106445_1107804_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107800_1108643_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108661_1110548_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110489_1110741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110785_1111418_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111436_1112039_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_161633091.1|1113720_1114428_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114786_1115773_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115912_1116926_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116922_1117873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117985_1118444_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118480_1119794_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119811_1120183_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120179_1121643_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121783_1122512_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122493_1125343_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125555_1126506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126673_1127498_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127497_1128376_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129280_1130396_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130424_1131219_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131215_1133081_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133159_1133792_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133788_1134091_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134133_1135654_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135660_1136416_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136445_1137550_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137652_1139353_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139334_1140312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140321_1141602_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141594_1142290_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142323_1143151_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143432_1146663_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147398_1151325_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153224_1155021_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155020_1155989_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156058_1156904_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156971_1157526_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157572_1158523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	1176310	1242303	4106343	tRNA,transposase	Bacillus_phage(25.0%)	51	NA	NA
WP_005012067.1|1176310_1177261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177390_1178374_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178428_1179151_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180629_1181985_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182065_1184441_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184605_1186681_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186742_1187537_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187644_1188607_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188594_1189350_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189457_1191095_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191162_1191900_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192002_1192578_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192750_1193287_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193319_1193634_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193649_1194495_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194533_1195913_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195990_1196872_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196970_1197921_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197917_1198328_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198435_1199290_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199282_1200245_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200290_1201415_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201520_1202399_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202523_1203303_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203456_1204878_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205312_1207010_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207236_1208178_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208504_1209251_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209258_1210185_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210306_1211224_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211263_1212217_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212241_1212820_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214493_1215102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215179_1215533_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215616_1216606_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216807_1217758_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217844_1218795_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218791_1219742_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1220002_1221031_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221110_1222409_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1222405_1222987_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1223299_1227346_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1227586_1235248_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1235244_1236195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1237334_1237808_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1237947_1238568_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1238703_1239504_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1239558_1240650_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1240671_1241115_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1241143_1241776_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1241886_1242303_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 14
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	1270670	1327881	4106343	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270670_1271621_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275367_1275979_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276201_1277662_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277758_1279351_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279704_1279962_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279963_1281304_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281399_1282089_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282101_1283532_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285256_1286078_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286088_1287660_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287688_1288666_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288692_1289496_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289492_1290287_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290294_1291530_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291543_1291957_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247980.1|1292267_1292585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1292706_1293657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294278_1296006_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296117_1297476_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1297768_1298719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298759_1299830_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299852_1300731_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300902_1301874_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302036_1302879_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303040_1303721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303714_1304884_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304880_1305912_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305979_1307197_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307231_1308764_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308844_1309468_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309498_1310110_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310145_1310616_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311047_1312052_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312088_1313603_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313606_1314566_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314594_1315398_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315399_1317034_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317117_1318179_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318377_1318647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318650_1319175_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319590_1320541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320537_1321572_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321680_1322319_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322613_1322841_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322963_1323677_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323921_1324872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325011_1325257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325371_1326820_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326930_1327881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	1418113	1470266	4106343	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1418113_1419064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1419230_1419584_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419596_1419959_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420000_1420426_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420628_1421885_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422083_1423064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423213_1424455_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424553_1425504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425512_1426208_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429029_1429629_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429639_1431805_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431828_1433613_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433612_1433702_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434396_1434669_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434668_1436735_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436731_1437682_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437780_1438731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438846_1439179_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439175_1439862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439848_1440808_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440840_1443210_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443209_1443842_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443943_1445284_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445330_1446686_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446976_1447213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447400_1447718_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447990_1448506_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448776_1449532_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449870_1450077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450084_1450744_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451038_1453243_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453353_1454577_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454699_1455674_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455741_1456935_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456949_1457750_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457746_1459603_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459599_1460205_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460223_1461609_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462334_1463561_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463649_1464432_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464530_1465481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465507_1466281_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466292_1467534_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469315_1470266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	1514189	1582275	4106343	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514189_1514678_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514794_1515373_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515478_1515847_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515945_1516896_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516902_1518015_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518701_1519904_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520107_1522768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522780_1526185_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526852_1529078_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529124_1529451_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529501_1530110_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530208_1531159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531228_1531993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1531989_1532526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532692_1533544_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533603_1534230_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534226_1535177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535275_1536388_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536377_1537379_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537484_1538996_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1538992_1540297_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540408_1540969_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541236_1541791_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542246_1542462_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542716_1545314_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545310_1546498_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547157_1547772_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547860_1548982_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1548999_1549905_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550797_1551748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551929_1552682_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552750_1553410_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553406_1554135_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554147_1556427_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556451_1556655_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556696_1557329_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557464_1558382_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558378_1559092_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559329_1560100_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560104_1560704_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560948_1562439_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562497_1562782_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563347_1564274_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564410_1565151_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565317_1566694_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566875_1567781_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569432_1571235_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571352_1572003_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572101_1573052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573073_1574294_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574479_1575892_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575955_1577023_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577022_1578510_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578519_1579464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579623_1580322_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580399_1581305_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581324_1582275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	1618224	1673815	4106343	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618224_1619175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619233_1620007_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1619999_1621556_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621552_1622503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623829_1624432_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624671_1625373_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625366_1626149_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626333_1627284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627382_1628120_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628309_1629068_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629114_1630104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630281_1631250_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632789_1633758_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633766_1634708_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635181_1636192_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636182_1637697_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637693_1639040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639042_1640077_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640126_1641752_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642304_1643255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643359_1644307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644360_1646175_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646167_1646842_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646971_1650046_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650059_1650359_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650673_1651297_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651540_1652410_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652387_1653332_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653417_1654344_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654456_1655236_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655226_1656423_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656453_1657404_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657625_1658315_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658379_1659135_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659186_1660179_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660188_1661142_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661257_1662220_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663621_1664050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664046_1664997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665290_1666013_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666451_1667639_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667642_1667993_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669742_1670714_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670727_1671441_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671445_1672363_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672469_1672766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672864_1673815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	1831579	1890849	4106343	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831579_1832530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832654_1833464_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833664_1834615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835888_1837106_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838162_1839065_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839141_1840014_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840144_1840513_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840570_1841617_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841812_1843069_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843073_1844411_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844560_1845517_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845619_1846552_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846667_1846988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846980_1847340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847387_1848962_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849014_1849959_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849976_1850807_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850799_1852434_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852430_1853786_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854692_1856270_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856273_1857548_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857645_1858020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859735_1860869_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860906_1861512_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861508_1862327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862398_1865023_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865009_1865264_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865330_1865912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866215_1866476_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866641_1867265_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867264_1868038_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868034_1869243_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869268_1869742_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869815_1870766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870864_1871815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871913_1873263_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874028_1874784_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874876_1877759_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878081_1878507_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878534_1879683_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879679_1880186_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880201_1881488_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881537_1882833_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882834_1883473_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883478_1884636_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884662_1886018_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886021_1887092_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887230_1887467_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887554_1888661_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888626_1889931_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889949_1890849_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	1901089	1945412	4106343	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1901089_1902040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902138_1903089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903288_1904374_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904389_1905151_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905147_1906071_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906169_1906694_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906702_1907446_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907541_1907781_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907794_1907947_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908032_1909523_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909614_1910553_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910549_1910726_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910728_1911391_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913012_1913156_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913152_1914127_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1914293_1915244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915240_1916515_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916618_1917812_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917808_1918462_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918458_1919895_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919882_1920242_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921056_1921197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921214_1922165_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923210_1925076_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925333_1926854_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926941_1927592_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928540_1929836_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929857_1930742_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930840_1931716_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931705_1932062_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932192_1933167_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933296_1933476_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933573_1934098_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934108_1934945_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935057_1935429_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935425_1935977_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1935992_1937684_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937732_1938413_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938660_1939125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939294_1940224_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940236_1940884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940957_1942775_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942858_1943809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944461_1945412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	1975185	2039552	4106343	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975185_1976136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976356_1977307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977405_1978371_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978508_1979408_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982002_1983490_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983500_1984697_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984769_1986089_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986085_1986961_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1986991_1988140_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988157_1988472_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988493_1989216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989215_1990034_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990038_1990566_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990571_1991828_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992186_1993326_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993403_1994276_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995146_1996097_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996056_1996692_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997051_1998374_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998692_1999514_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000938_2001511_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001550_2003380_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003342_2004401_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004438_2004900_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004984_2005731_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007221_2010452_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010518_2011850_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012102_2012477_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012579_2013758_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013768_2014359_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014469_2015276_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015301_2016096_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017096_2018071_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018229_2018742_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018898_2019870_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021614_2022421_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022417_2023719_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023669_2024434_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024547_2025318_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025401_2026589_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026661_2027036_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027136_2028399_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028395_2029253_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029425_2030427_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030878_2031829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033392_2034544_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034912_2035149_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035212_2035380_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035493_2037389_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037552_2038503_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038601_2039552_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	2171078	2228356	4106343	tRNA,transposase	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2171078_2172029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172127_2174122_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174181_2175147_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175136_2177998_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178000_2178507_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178611_2179820_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179821_2180760_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180921_2181395_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181391_2182342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182452_2182893_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183021_2184251_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184289_2185111_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185164_2186316_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186407_2186896_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189446_2191996_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192066_2194640_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194905_2195106_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195137_2195299_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195356_2195695_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195843_2196794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197567_2198236_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198217_2200173_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200415_2201165_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201177_2202041_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202044_2203460_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203593_2204322_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204460_2204661_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204836_2205235_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205258_2206659_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206777_2207530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207818_2208496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208522_2209302_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209298_2210183_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210200_2210980_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210964_2211723_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211860_2212496_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212763_2213780_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213877_2214918_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215052_2216345_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217704_2218088_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218105_2218693_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2218730_2219681_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2219779_2220340_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2220336_2220882_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2221077_2222106_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2222146_2223487_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2223595_2224600_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2224706_2227307_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2227405_2228356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	2575459	2641959	4106343	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575459_2576410_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576779_2577352_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577354_2578365_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578357_2578858_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578868_2579210_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2579278_2580013_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580029_2580299_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580321_2581110_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581156_2582173_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582389_2583832_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584010_2585630_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585750_2587571_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587649_2589182_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2589215_2590862_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590931_2591954_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591971_2593105_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593107_2593797_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593796_2594582_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594625_2595390_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595428_2596850_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596915_2597620_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597667_2598087_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598099_2598507_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598690_2599401_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599527_2599818_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599835_2600318_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604823_2605978_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606283_2607300_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607546_2608335_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608401_2609082_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609078_2609849_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609947_2610898_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610953_2611871_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611881_2613060_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613079_2614075_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615663_2616272_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616259_2617300_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617317_2618280_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618276_2619470_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619466_2620264_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620289_2621276_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621294_2623334_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2623535_2624216_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624229_2625141_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625137_2625716_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625854_2626760_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626767_2630187_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630174_2632775_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633730_2634363_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634756_2635515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2635511_2636714_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636901_2637852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638759_2639905_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639891_2640647_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640763_2640943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641008_2641959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	2806612	2870103	4106343	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	54	NA	NA
WP_076879566.1|2806612_2807563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807891_2808497_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808550_2809864_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809938_2810409_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810408_2811197_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811207_2812860_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931075.1|2815058_2815565_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815561_2816326_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816341_2816626_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816690_2817680_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817851_2818781_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818752_2819439_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819472_2820018_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820062_2821328_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821324_2822227_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823408_2824353_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824447_2825965_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826006_2827635_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827742_2828624_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831736_2832111_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832135_2832474_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832517_2834152_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834190_2835537_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835644_2837066_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837135_2837720_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837822_2838773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838907_2840014_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840024_2841122_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931088.1|2842477_2842999_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2842995_2843478_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843483_2843735_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843715_2844201_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844336_2847798_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847815_2848700_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848709_2849141_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849387_2849891_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849968_2851369_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851443_2852319_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852315_2853323_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853790_2854096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854186_2854777_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854967_2855984_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856175_2858512_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858594_2859029_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859127_2860078_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860176_2861127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861123_2861918_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861949_2862654_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862728_2863529_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863525_2863933_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863929_2864571_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864563_2866564_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867824_2869156_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869152_2870103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	2884578	2925937	4106343	transposase,protease	uncultured_Mediterranean_phage(40.0%)	30	NA	NA
WP_010930800.1|2884578_2885529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2885859_2889681_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889837_2890506_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890510_2892184_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892202_2893522_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893526_2895842_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895897_2898066_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898062_2903243_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903341_2903656_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903883_2904129_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904223_2904742_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904841_2906047_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906162_2907560_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907676_2908255_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908327_2909719_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909886_2910837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911117_2911738_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911734_2912148_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912144_2913188_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913243_2913432_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913441_2914206_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914296_2914953_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915044_2915803_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915828_2917430_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917630_2918635_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918735_2918999_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919116_2919893_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920483_2921434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923817_2924930_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2924986_2925937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	2956323	3000014	4106343	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2956323_2957274_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957394_2958291_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960568_2962794_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962958_2964047_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964003_2964657_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964704_2965502_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966033_2966984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967064_2968213_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968269_2969220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969318_2969624_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969652_2970087_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970088_2971333_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971329_2972040_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972054_2972966_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973328_2973733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973729_2974188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974194_2975103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975099_2975966_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975952_2976780_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976790_2977918_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2978995_2980234_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980275_2981538_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981544_2982297_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982348_2982534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982809_2983274_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983305_2983965_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984109_2986218_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986214_2987165_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987268_2987889_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2987992_2988733_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989867_2990992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991037_2991406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991647_2992598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993633_2994176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994373_2994544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994561_2995512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995508_2996417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996543_2997380_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997892_2999002_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999063_3000014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	3400865	3464697	4106343	tRNA,transposase	Staphylococcus_phage(12.5%)	46	NA	NA
WP_005012067.1|3400865_3401816_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402582_3403677_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403669_3405004_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404957_3405641_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405666_3406830_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406826_3407828_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407827_3408700_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408696_3409446_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409442_3410234_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410230_3411370_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411645_3412431_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412464_3413247_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413250_3413640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414779_3415643_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415678_3416767_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416763_3417714_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418067_3421046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421972_3422851_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010931354.1|3425745_3426213_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426255_3427026_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427046_3427847_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427857_3429267_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429361_3430147_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430386_3431403_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431510_3431903_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432040_3432721_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432725_3433697_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433792_3434743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3436247_3436949_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3436948_3438373_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3439442_3440783_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3440898_3442662_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442773_3443652_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443764_3444580_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444583_3444835_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444919_3445936_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446266_3446488_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448848_3449766_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450263_3451472_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451551_3453123_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453240_3454176_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454364_3455309_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455876_3461594_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461599_3462727_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462782_3463409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463680_3464697_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	3469111	3535444	4106343	tRNA,transposase	Acinetobacter_phage(33.33%)	56	NA	NA
WP_019247745.1|3469111_3469984_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470333_3471473_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471469_3472129_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472200_3472833_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472862_3473381_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473391_3474501_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474547_3475402_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475403_3476306_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477528_3478479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480233_3481223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481398_3482187_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482183_3483215_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483233_3483797_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483852_3485373_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485636_3486341_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486348_3487077_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487191_3487566_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487608_3488898_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488894_3490064_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490060_3490900_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490959_3491895_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010929591.1|3491907_3492858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492956_3493919_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493950_3494310_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494434_3495337_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495338_3497111_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497145_3497922_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499245_3500196_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3501047_3501368_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3501440_3502322_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3502438_3502681_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3502818_3503289_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3503301_3503841_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3503875_3505417_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3505515_3506421_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3506463_3507864_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3507873_3508296_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3508478_3509363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3509438_3510515_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3510821_3512924_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3512966_3515036_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3515134_3516085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516213_3517347_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517390_3518296_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518298_3519999_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3519995_3520916_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520923_3521901_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815317.1|3524967_3525204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525330_3526194_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526282_3527104_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527183_3527921_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527917_3528910_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529062_3529686_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529730_3530879_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533202_3534153_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534493_3535444_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	3705327	3843707	4106343	tRNA,transposase,integrase	uncultured_Mediterranean_phage(10.34%)	118	3751020:3751037	3795660:3795677
WP_010929577.1|3705327_3706278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3706377_3707328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3707324_3707960_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3708089_3708989_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3709084_3709576_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3709622_3710588_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3711721_3712963_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3713076_3714093_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3714127_3714604_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3714746_3715655_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3715768_3716881_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3716981_3717467_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3717603_3718854_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3718955_3719468_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3719566_3720517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3720582_3721521_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3721543_3722170_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3722166_3722823_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3722819_3723422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3723428_3724016_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3724196_3724766_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3724836_3726156_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3726262_3726454_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3726705_3727995_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3728149_3729145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3729229_3729904_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3729900_3730851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3731012_3732254_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3732250_3733195_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3733313_3734264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3734223_3735153_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3735206_3735542_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3735586_3736351_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3736374_3737115_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3737122_3738676_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3738710_3739688_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3739960_3740542_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3740593_3747496_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3747942_3748074_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3748339_3748546_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3749550_3750210_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3750237_3751383_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3751020:3751037	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3751523_3751859_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3751933_3752794_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3753057_3753759_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3753928_3754324_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3754433_3755384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3755394_3756036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3756202_3756445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3756543_3757494_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3757529_3757997_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3758230_3758608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3758604_3758787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3758790_3759777_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3759773_3760421_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3760478_3761006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3761042_3762227_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3762237_3762579_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3762691_3762892_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3762888_3763878_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3765364_3767335_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3767576_3767975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3767983_3768907_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3769364_3770315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3770545_3772237_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3772285_3772558_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3772554_3772926_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3773021_3773156_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3773561_3774971_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3774973_3776083_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3776177_3778631_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3778749_3779541_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3779660_3781088_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3781126_3782098_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3782516_3783680_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3783767_3784613_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3786169_3787120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3787674_3788049_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3788123_3789182_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3789205_3790156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3793037_3794207_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3794307_3795915_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3795660:3795677	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3795961_3797983_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3798011_3798257_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3798270_3799461_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3799656_3800622_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3800644_3801784_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3801995_3802958_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3803081_3805106_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3805302_3807546_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3807824_3808283_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3809210_3811832_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3811895_3814523_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3814674_3815739_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3815738_3816509_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3816517_3817351_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3817363_3818143_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3818216_3819650_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3819677_3820436_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3820491_3822342_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3822435_3822912_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3822928_3823849_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3823955_3824456_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3824829_3825522_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010931556.1|3826776_3830550_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3830886_3832776_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3832787_3833681_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3833784_3834582_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3834578_3835430_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3835491_3836172_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3836208_3836535_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3836535_3837495_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3837515_3838004_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3838285_3839302_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003807735.1|3839493_3840597_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931562.1|3840683_3841448_+	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_010931563.1|3841569_3842760_+	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010929591.1|3842756_3843707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP017162	Bordetella pertussis strain J109 chromosome, complete genome	4106343	4005411	4070323	4106343	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005411_4005897_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4005985_4006123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006115_4007096_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007362_4008172_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008211_4008892_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008885_4009344_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009355_4009718_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009800_4010484_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010539_4010848_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010866_4011181_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011177_4013652_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013659_4015051_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015047_4015233_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015211_4015913_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015909_4016731_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016711_4017836_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017828_4018848_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019053_4019944_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020188_4020980_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021062_4021437_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021414_4022824_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022816_4024199_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024533_4026138_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026215_4027187_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027197_4028124_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028514_4029465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029634_4030861_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031060_4031927_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031919_4032882_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032982_4033933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034031_4034982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035080_4036031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036027_4037521_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037517_4040625_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040621_4043690_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043686_4044937_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045117_4045870_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045911_4046556_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046564_4047545_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047644_4048388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048470_4048818_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048915_4049758_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049802_4050690_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050716_4050905_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051002_4052460_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052446_4053973_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053991_4054459_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054458_4055481_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055601_4056342_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056396_4057497_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057498_4058689_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058808_4059825_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060143_4060815_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060811_4061720_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061931_4062579_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066439_4067507_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067517_4068327_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068416_4069190_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069372_4070323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
