The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	27282	79602	4106326	transposase,tRNA	Synechococcus_phage(25.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_029443813.1|51132_52389_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53620_54355_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54360_54951_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54975_55665_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55661_56423_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56502_57402_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57495_58446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59246_60473_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60472_60892_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61075_62017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62440_63415_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63471_64053_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64065_64368_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64486_65545_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65579_66851_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67480_68662_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69083_70034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70127_70442_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71634_73542_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73703_74324_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74355_74937_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75025_75277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75278_76121_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76226_77636_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77632_78583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78657_79602_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	107425	175249	4106326	transposase,tRNA	Bacillus_phage(22.22%)	56	NA	NA
WP_010929626.1|107425_108376_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109275_110469_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110550_111180_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111241_111925_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111934_113617_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113904_114252_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114342_114660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114942_115959_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116034_116835_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116831_117707_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117717_119010_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119052_120093_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120198_121020_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121120_122071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122168_123074_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123070_123904_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124740_125751_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125747_126137_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127030_128284_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128374_130075_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130501_131149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131147_132587_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132697_132982_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133009_133888_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135154_136105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|136523_138032_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138778_142741_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142793_143576_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143663_144887_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144870_145803_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145808_146621_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|147933_148905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149023_149806_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150572_151553_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151549_152278_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152302_152734_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152835_153711_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|153762_154962_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|155066_155528_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155633_157031_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157027_157705_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157760_159071_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159082_159781_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159944_160721_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160886_161909_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162137_162773_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_023995348.1|162778_164332_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164890_165841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167284_168187_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168164_168794_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169076_170507_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170540_171170_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171218_172826_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172850_173534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173615_174092_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174298_175249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	178631	236266	4106326	transposase,tRNA,protease	Klosneuvirus(14.29%)	47	NA	NA
WP_010929666.1|178631_180710_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180959_181232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181333_182419_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182422_184327_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_010929670.1|188057_188621_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188628_189051_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189078_189498_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189526_189973_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190099_190597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190751_193022_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193097_194303_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194400_195351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195453_196089_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196085_196979_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197373_198474_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198555_198930_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198989_201854_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|201998_202739_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202808_204020_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204048_205017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205630_206581_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206737_207061_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207165_208206_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208211_208991_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209036_209333_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209358_209634_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209690_210335_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210334_211021_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211219_212002_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212052_212778_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212809_214159_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214270_215203_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215660_218456_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219049_221893_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222063_222783_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222821_223370_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223524_224424_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224448_225399_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225617_226313_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226329_227742_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227854_229285_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229326_231240_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231558_232125_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232215_233217_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233331_234282_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234368_235319_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235315_236266_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	250680	303016	4106326	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_003814337.1|250680_251622_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251618_253508_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253594_254233_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254375_255761_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255691_256228_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256379_257771_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257787_258768_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258903_259887_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259951_260851_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260957_262712_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262719_263844_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263857_264838_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265568_266519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267078_267624_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267749_269327_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269342_270497_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270510_270636_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270632_272384_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272380_274060_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274122_274671_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275813_276092_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277135_278086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|278072_278288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278363_278525_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279191_279641_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279650_280262_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280420_281269_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281294_282677_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282741_283383_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283522_283981_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284005_284782_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284835_285972_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285968_286919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287017_287644_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287666_288593_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288601_290188_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290184_291189_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291388_292249_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292280_293282_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293352_294162_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294239_296099_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296227_297430_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297543_298425_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299927_300488_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300547_301498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301689_301977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302065_303016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	390850	448359	4106326	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390850_391801_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391937_392855_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392851_393100_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393096_394302_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394374_395370_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395392_396613_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396609_397254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398984_399794_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400098_401052_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401150_402134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402060_402762_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402810_403581_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403577_404756_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404923_406630_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406626_407523_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407563_409153_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409202_410195_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410263_410863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411323_412304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412379_413330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413418_414333_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414329_414989_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415078_416002_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416007_416463_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416459_417563_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417521_417791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417750_419370_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419366_420425_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420554_421049_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421141_422119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422314_423520_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423516_425028_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425043_426357_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426547_426727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427136_427871_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430315_431266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431397_431796_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432206_432677_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432765_433110_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433209_434610_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436398_436917_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437027_437783_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437978_439211_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439203_439989_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440055_441027_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441037_442015_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442140_443313_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443339_444368_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444433_445627_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447408_448359_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	589363	650555	4106326	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589363_590314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590789_591680_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591676_592498_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592698_593190_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593208_594282_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594328_595432_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595507_596128_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596148_596658_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596712_596964_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597027_598161_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598168_598555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598551_601071_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601499_601838_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601834_602341_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602402_603203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603313_604255_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604348_605884_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607563_609414_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609417_610251_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610250_611192_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611443_612415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612556_614845_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615151_616060_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616114_617080_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617154_618816_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618887_619598_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619746_620697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621395_621779_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621836_622439_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622456_622858_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622973_623885_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623881_624463_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625257_625992_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626032_627082_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627229_627808_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628194_629172_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629265_633660_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633860_634709_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634867_635680_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635735_636686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636784_637585_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637646_638030_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638041_639394_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639681_640011_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640013_640763_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640945_641866_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641912_642125_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642147_642570_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642586_643687_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643783_645301_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645376_646216_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646237_647110_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647200_648295_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648588_649539_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649613_650555_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	655879	702069	4106326	transposase,tRNA,terminase,tail	uncultured_Caudovirales_phage(18.18%)	49	NA	NA
WP_023995141.1|655879_656905_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656945_657185_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657254_658844_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658843_659392_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659472_660045_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660063_660975_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661048_662017_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662139_663213_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663217_665038_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_033446132.1|666152_666488_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666621_667272_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667293_668712_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668781_669537_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669505_670264_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670274_671156_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671172_671880_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671882_672641_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672850_674593_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674585_675110_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675149_675944_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676111_677185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677283_678234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678485_678692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678763_679375_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679929_680181_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680173_680863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681119_682070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682709_683195_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683181_684459_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684461_685880_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685908_686964_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686969_687212_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687334_687937_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688365_689316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689990_690242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690304_690787_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690800_690989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690988_691384_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691380_691779_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691775_692198_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692205_692706_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692960_693479_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693488_693818_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693835_694126_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694151_696764_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696773_697133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697200_697734_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697730_698120_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698112_702069_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	708235	778311	4106326	transposase,tRNA	Planktothrix_phage(40.0%)	58	NA	NA
WP_003814636.1|708235_709966_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710018_710447_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710449_711130_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711129_711588_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711624_712599_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712615_713932_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713963_714461_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714547_715237_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715236_716286_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716282_717077_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717245_717596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717571_718129_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719258_720209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722346_723576_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723578_725021_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725125_726271_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726302_727100_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727124_728684_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728680_731053_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731162_732266_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732265_732958_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733101_733803_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733787_734165_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734896_735847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736006_736879_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737219_737438_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737477_738857_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738898_740296_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740335_741988_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741991_742876_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742875_743817_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743895_745515_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745681_746497_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746564_747134_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747134_748085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748739_749837_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749870_751136_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929982.1|752486_753077_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753092_755537_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755656_756628_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756759_757284_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757243_758194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758415_760611_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760683_761091_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761213_762164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807452.1|762279_762723_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010925762.1|762785_763580_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807457.1|763745_764882_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_003807459.1|764952_766086_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807460.1|766235_766496_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807462.1|766529_766841_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_010929987.1|767265_768414_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_010929988.1|768528_769494_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929989.1|769762_770629_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929990.1|770759_772808_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929991.1|772825_774823_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929992.1|774857_776195_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_023853308.1|776457_778311_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	860776	1000562	4106326	transposase	Bacillus_phage(11.76%)	116	NA	NA
WP_005013747.1|860776_861727_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861947_862616_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862739_863846_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863858_866972_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866968_868462_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868476_869148_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869191_869686_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869826_870474_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870577_872626_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872622_874635_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874660_875995_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876103_877096_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877162_879247_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879271_880243_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880371_881403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|881406_882558_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882728_883652_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883729_884554_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884750_885767_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885963_886947_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888545_889934_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889964_890954_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891064_892297_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892578_893379_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893401_895633_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896420_896867_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896888_897635_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897778_898756_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899389_900001_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|899994_901212_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901352_902303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|902401_903352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903348_904068_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904188_906348_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906438_906708_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906796_907003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907001_907529_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907547_908327_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908494_909511_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909583_910075_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910085_911801_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912963_913914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913910_915743_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916141_916801_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917328_918009_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918290_919007_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919021_920323_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922467_925356_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925579_926932_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926960_927482_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927478_928933_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928967_929216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929321_930197_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930222_931278_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931290_932082_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932114_933485_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934661_935612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935664_935886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936045_936258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936377_937496_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937592_937808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938001_938253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938365_939316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939312_939696_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939750_941565_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941714_942542_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942587_943568_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943564_943777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943773_944955_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945118_945853_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945854_948467_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948602_950516_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951131_951542_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951639_952725_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952823_953774_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953770_954745_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954869_955781_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956057_956450_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956579_957530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957559_957742_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958514_959696_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959911_960589_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960585_961311_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961436_962018_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962388_965070_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965072_966203_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966195_967281_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967367_968267_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968263_969592_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969606_970278_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970465_972181_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972182_972542_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972733_973048_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973090_974311_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974307_975249_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975245_976235_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976269_976854_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976952_977903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977983_978895_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978955_980101_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980120_981035_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981106_981856_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981855_982785_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983028_984855_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984937_985579_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985768_986803_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988639_989704_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990501_991410_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992897_994172_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994325_994706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994713_995586_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995891_996272_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996482_997208_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997303_998254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998358_999408_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999545_1000562_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	1046267	1086910	4106326	transposase,tRNA,holin	uncultured_Mediterranean_phage(50.0%)	34	NA	NA
WP_005012067.1|1046267_1047218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047516_1048254_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048689_1049013_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049047_1049608_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049728_1050604_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050616_1051564_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051665_1051959_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051985_1054043_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054057_1054558_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054631_1056338_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057201_1058254_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058306_1058696_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058704_1059337_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059436_1060453_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061283_1062291_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062287_1063931_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063927_1064815_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064955_1065429_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065418_1066441_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066437_1067865_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068802_1069819_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070151_1071087_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071136_1073017_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073083_1073428_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073572_1074709_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074705_1075779_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075936_1077373_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077463_1078105_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078440_1079457_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081499_1082450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083652_1085074_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085337_1086054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086138_1086456_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086496_1086910_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 11
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	1095977	1177252	4106326	transposase,tRNA	Planktothrix_phage(16.67%)	58	NA	NA
WP_005013747.1|1095977_1096928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097295_1098072_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098116_1098974_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1098995_1100012_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100146_1101187_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101381_1103463_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103698_1105192_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105422_1106217_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106437_1107796_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107792_1108635_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108653_1110540_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110481_1110733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110777_1111410_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111428_1112031_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_161633091.1|1113712_1114420_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114778_1115765_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115904_1116918_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116914_1117865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117977_1118436_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118472_1119786_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119803_1120175_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120171_1121635_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121775_1122504_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122485_1125335_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125547_1126498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126665_1127490_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127489_1128368_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129272_1130388_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130416_1131211_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131207_1133073_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133151_1133784_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133780_1134083_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134125_1135646_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135652_1136408_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136437_1137542_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137644_1139345_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139326_1140304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140313_1141594_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141586_1142282_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142315_1143143_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143423_1146654_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147389_1151316_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153215_1155012_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155011_1155980_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156049_1156895_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156962_1157517_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157563_1158514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158612_1159245_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159409_1161692_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161846_1164543_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164668_1165157_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167567_1170438_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170483_1171698_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171927_1173355_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173452_1174544_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174556_1175315_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175402_1176305_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176301_1177252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	1216799	1298709	4106326	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_076879566.1|1216799_1217750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217836_1218787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218783_1219734_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1219994_1221023_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221102_1222401_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1222397_1222979_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1223291_1227338_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1227578_1235240_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1235236_1236187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1237326_1237800_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1237939_1238560_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1238695_1239496_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1239550_1240642_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1240663_1241107_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1241135_1241768_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1241878_1242295_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1242287_1242980_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1243086_1243461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1243537_1244347_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1244442_1245387_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1245425_1246397_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1246487_1246925_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1246983_1247865_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1248868_1249729_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1249761_1251144_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1251140_1252160_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1252532_1253027_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1253034_1253775_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1253855_1255460_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1255499_1256288_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1256413_1258579_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1259459_1260272_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1260284_1260593_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1260710_1262441_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1262442_1263645_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1263717_1264386_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1264507_1264975_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1265110_1266493_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1266489_1267614_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1267610_1270247_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931041.1|1275358_1275970_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276192_1277653_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277749_1279342_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279695_1279953_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279954_1281295_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281390_1282080_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282092_1283523_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285247_1286069_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286079_1287651_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287679_1288657_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288683_1289487_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289483_1290278_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290285_1291521_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291534_1291948_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292697_1293648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294269_1295997_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296108_1297467_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1297758_1298709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	1418103	1487890	4106326	transposase,tRNA	Salmonella_phage(16.67%)	60	NA	NA
WP_005013747.1|1418103_1419054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1419220_1419574_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419586_1419949_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1419990_1420416_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420618_1421875_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422073_1423054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423203_1424445_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_003814052.1|1425501_1426197_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429017_1429617_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429627_1431793_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431816_1433601_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433600_1433690_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434384_1434657_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434656_1436723_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436719_1437670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437768_1438719_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438834_1439167_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439163_1439850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439836_1440796_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440828_1443198_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443197_1443830_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443931_1445272_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445318_1446674_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446964_1447201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447388_1447706_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447978_1448494_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448764_1449520_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449858_1450065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450072_1450732_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451026_1453231_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453341_1454565_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454687_1455662_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455729_1456923_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456937_1457738_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457734_1459591_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459587_1460193_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460211_1461597_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462322_1463549_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463637_1464420_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464518_1465469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465495_1466269_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466280_1467522_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930389.1|1470284_1471382_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1471378_1472329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812612.1|1472750_1473143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248759.1|1473148_1473925_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812608.1|1474312_1476262_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_033446215.1|1476282_1476828_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_010930391.1|1476964_1477921_+	glutathione synthase	NA	NA	NA	NA	NA
WP_003812601.1|1477931_1478330_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_003812598.1|1478445_1478715_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_010930392.1|1478836_1480531_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_010930393.1|1480695_1480920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930394.1|1481518_1482469_+	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930395.1|1482510_1483671_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930396.1|1483831_1484752_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_003812581.1|1484764_1485406_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930397.1|1485402_1486074_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812577.1|1486070_1486841_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_005012067.1|1486939_1487890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	1514178	1582264	4106326	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514178_1514667_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514784_1515363_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515468_1515837_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515935_1516886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516892_1518005_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518691_1519894_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520097_1522758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522770_1526175_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526842_1529068_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529114_1529441_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529491_1530100_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530198_1531149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531218_1531983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1531979_1532516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532682_1533534_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533593_1534220_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534216_1535167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535265_1536378_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536367_1537369_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537474_1538986_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1538982_1540287_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540398_1540959_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541226_1541781_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542236_1542452_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542706_1545304_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545300_1546488_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547146_1547761_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547849_1548971_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1548988_1549894_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550786_1551737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551918_1552671_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552739_1553399_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553395_1554124_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554136_1556416_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556440_1556644_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556685_1557318_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557453_1558371_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558367_1559081_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559318_1560089_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560093_1560693_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560937_1562428_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562486_1562771_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563336_1564263_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564399_1565140_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565306_1566683_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566864_1567770_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569421_1571224_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571341_1571992_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572090_1573041_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573062_1574283_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574468_1575881_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575944_1577012_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577011_1578499_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578508_1579453_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579612_1580311_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580388_1581294_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581313_1582264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	1618213	1682050	4106326	transposase	Brazilian_cedratvirus(25.0%)	53	NA	NA
WP_005013747.1|1618213_1619164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619222_1619996_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1619988_1621545_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621541_1622492_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623818_1624421_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624660_1625362_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625355_1626138_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626322_1627273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627371_1628109_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628298_1629057_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629103_1630093_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630270_1631239_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632778_1633747_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633755_1634697_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635170_1636181_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636171_1637686_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637682_1639029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639031_1640066_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640115_1641741_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642293_1643244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643348_1644296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644349_1646164_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646156_1646831_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646960_1650035_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650048_1650348_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650662_1651286_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651529_1652399_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652376_1653321_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653406_1654333_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654445_1655225_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655215_1656412_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656442_1657393_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657614_1658304_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658368_1659124_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659175_1660168_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660177_1661131_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661246_1662209_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663610_1664039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664035_1664986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665279_1666002_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666440_1667628_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667631_1667982_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669731_1670703_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670716_1671430_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671434_1672352_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672458_1672755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930509.1|1674961_1677895_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1677894_1678239_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1678235_1679864_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_010930510.1|1679860_1680340_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_033446177.1|1680339_1680621_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1680617_1680944_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1681099_1682050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	1831569	1890838	4106326	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831569_1832520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832644_1833454_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833654_1834605_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835878_1837096_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838152_1839055_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839131_1840004_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840134_1840503_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840560_1841607_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841802_1843059_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843063_1844401_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844550_1845507_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845609_1846542_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846657_1846978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846970_1847330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847377_1848952_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849004_1849949_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849966_1850797_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850789_1852424_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852420_1853776_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854682_1856260_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856263_1857538_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857635_1858010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859725_1860859_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860896_1861502_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861498_1862317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862388_1865013_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1864999_1865254_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865320_1865902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866204_1866465_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866630_1867254_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867253_1868027_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868023_1869232_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869257_1869731_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869804_1870755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870853_1871804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871902_1873252_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874017_1874773_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874865_1877748_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878070_1878496_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878523_1879672_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879668_1880175_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880190_1881477_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881526_1882822_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882823_1883462_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883467_1884625_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884651_1886007_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886010_1887081_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887219_1887456_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887543_1888650_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888615_1889920_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889938_1890838_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	1902126	1963676	4106326	transposase	Staphylococcus_phage(14.29%)	58	NA	NA
WP_005013747.1|1902126_1903077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903276_1904362_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904377_1905139_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905135_1906059_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906157_1906682_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906690_1907434_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907529_1907769_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907782_1907935_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908020_1909511_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909602_1910541_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910537_1910714_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910716_1911379_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913000_1913144_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913140_1914115_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1914281_1915232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915228_1916503_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916606_1917800_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917796_1918450_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918446_1919883_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919870_1920230_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921044_1921185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1923197_1925063_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925320_1926841_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926928_1927579_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928527_1929823_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929844_1930729_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930827_1931703_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931692_1932049_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932179_1933154_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933283_1933463_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933560_1934085_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934095_1934932_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935044_1935416_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935412_1935964_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1935979_1937671_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937719_1938400_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938647_1939112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939281_1940211_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940223_1940871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940944_1942762_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942845_1943796_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944448_1945399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1945417_1945765_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1945793_1947233_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1947251_1947647_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1947821_1948430_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1948442_1949261_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1949212_1950187_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1950215_1951277_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1951273_1953490_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1953503_1953962_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1954119_1954464_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1954620_1955526_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1955612_1956626_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1958605_1959622_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1959764_1961117_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1961291_1961588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1962725_1963676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	1975172	2039540	4106326	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975172_1976123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976344_1977295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977393_1978359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978496_1979396_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1981989_1983477_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983487_1984684_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984756_1986076_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986072_1986948_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1986978_1988127_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988144_1988459_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988480_1989203_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989202_1990021_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990025_1990553_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990558_1991815_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992173_1993313_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993390_1994263_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995133_1996084_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996043_1996679_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997038_1998361_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998679_1999501_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000925_2001498_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001537_2003367_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003329_2004388_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004425_2004887_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004971_2005718_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007208_2010439_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010505_2011837_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012089_2012464_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012566_2013745_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013755_2014346_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014456_2015263_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015288_2016083_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017083_2018058_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018216_2018729_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018885_2019857_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021601_2022408_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022404_2023706_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023656_2024421_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024534_2025305_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025389_2026577_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026649_2027024_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027124_2028387_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028383_2029241_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029413_2030415_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030866_2031817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033380_2034532_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034900_2035137_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035200_2035368_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035481_2037377_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037540_2038491_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038589_2039540_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	2171067	2228345	4106326	transposase,tRNA	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2171067_2172018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172116_2174111_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174170_2175136_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175125_2177987_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2177989_2178496_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178600_2179809_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179810_2180749_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180910_2181384_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181380_2182331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182441_2182882_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183010_2184240_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184278_2185100_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185153_2186305_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186396_2186885_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189435_2191985_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192055_2194629_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194894_2195095_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195126_2195288_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195345_2195684_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195832_2196783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197556_2198225_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198206_2200162_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200404_2201154_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201166_2202030_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202033_2203449_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203582_2204311_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204449_2204650_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204825_2205224_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205247_2206648_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206766_2207519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207807_2208485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208511_2209291_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209287_2210172_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210189_2210969_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210953_2211712_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211849_2212485_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212752_2213769_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213866_2214907_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215041_2216334_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217693_2218077_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218094_2218682_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2218719_2219670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2219768_2220329_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2220325_2220871_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2221066_2222095_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2222135_2223476_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2223584_2224589_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2224695_2227296_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2227394_2228345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	2575444	2641944	4106326	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575444_2576395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576764_2577337_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577339_2578350_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578342_2578843_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578853_2579195_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2579263_2579998_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580014_2580284_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580306_2581095_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581141_2582158_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582374_2583817_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2583995_2585615_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585735_2587556_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587634_2589167_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2589200_2590847_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590916_2591939_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591956_2593090_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593092_2593782_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593781_2594567_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594610_2595375_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595413_2596835_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596900_2597605_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597652_2598072_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598084_2598492_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598675_2599386_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599512_2599803_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599820_2600303_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604808_2605963_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606268_2607285_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607531_2608320_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608386_2609067_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609063_2609834_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609932_2610883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610938_2611856_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611866_2613045_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613064_2614060_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615648_2616257_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616244_2617285_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617302_2618265_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618261_2619455_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619451_2620249_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620274_2621261_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621279_2623319_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2623520_2624201_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624214_2625126_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625122_2625701_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625839_2626745_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626752_2630172_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630159_2632760_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633715_2634348_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634741_2635500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2635496_2636699_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636886_2637837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638744_2639890_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639876_2640632_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640748_2640928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2640993_2641944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	2670059	2707471	4106326	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2670059_2671010_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671108_2672059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2672151_2672691_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2672797_2673142_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2673199_2674648_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2674835_2675171_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2676798_2677977_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2678059_2678560_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2678669_2679371_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2679382_2679847_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2679861_2680137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2680133_2680910_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2680938_2681766_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2681891_2682362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2682488_2683382_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2683429_2684611_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2684623_2685439_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2685572_2686100_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2686096_2686594_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2686741_2687119_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2687340_2688291_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2688389_2689001_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2689235_2690363_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2690473_2691562_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2691614_2692466_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2692485_2693367_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2693543_2694857_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2695067_2695901_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2695897_2696479_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2696832_2697783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2697798_2698914_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2699016_2699943_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2699942_2701181_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2701177_2701945_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2701945_2702647_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2702728_2703175_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2704064_2704703_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2705471_2706422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2706520_2707471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	2806598	2870090	4106326	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	55	NA	NA
WP_076879566.1|2806598_2807549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807877_2808483_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808536_2809850_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809924_2810395_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810394_2811183_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811193_2812846_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931075.1|2815044_2815551_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815547_2816312_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816327_2816612_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816676_2817666_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817837_2818767_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818738_2819425_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819458_2820004_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820048_2821314_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821310_2822213_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823394_2824339_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824433_2825951_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2825992_2827621_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827728_2828610_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831722_2832097_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832121_2832460_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832503_2834138_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834176_2835523_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835630_2837052_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837121_2837706_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837808_2838759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838893_2840000_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840010_2841108_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841252_2842458_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842464_2842986_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2842982_2843465_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843470_2843722_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843702_2844188_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844323_2847785_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847802_2848687_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848696_2849128_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849374_2849878_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849955_2851356_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851430_2852306_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852302_2853310_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853777_2854083_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854173_2854764_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854954_2855971_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856162_2858499_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858581_2859016_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859114_2860065_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860163_2861114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861110_2861905_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861936_2862641_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862715_2863516_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863512_2863920_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863916_2864558_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864550_2866551_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867811_2869143_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869139_2870090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	2893510	2957257	4106326	transposase,protease	uncultured_Mediterranean_phage(22.22%)	54	NA	NA
WP_010931114.1|2893510_2895826_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895881_2898050_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898046_2903227_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903325_2903640_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903867_2904113_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904207_2904726_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904825_2906031_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906146_2907544_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907660_2908239_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908311_2909703_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909870_2910821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931122.1|2911717_2912131_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912127_2913171_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913226_2913415_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913424_2914189_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914279_2914936_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915027_2915786_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915811_2917413_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917613_2918618_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918718_2918982_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919099_2919876_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920466_2921417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923800_2924913_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2924969_2925920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2926128_2926350_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2926563_2927970_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2927966_2929271_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2929267_2930455_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2930671_2931124_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2931126_2931591_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2931670_2933350_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2933454_2934432_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2934511_2935480_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2935500_2936874_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2936870_2937707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2937823_2938279_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2938294_2938567_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2938659_2938983_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2939030_2939411_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2939630_2940428_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2940584_2942447_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2942496_2943408_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2943412_2943679_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2943765_2944596_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2944770_2945736_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2945906_2946917_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2947064_2948216_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2949358_2950831_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2950841_2951252_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2951315_2952362_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2952468_2953347_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2953360_2954557_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|2954618_2956310_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|2956306_2957257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	2966015	3025194	4106326	transposase	Bacillus_virus(28.57%)	56	NA	NA
WP_010930176.1|2966015_2966966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967046_2968195_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968251_2969202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969300_2969606_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969634_2970069_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970070_2971315_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971311_2972022_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972036_2972948_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973310_2973715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973711_2974170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974176_2975085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975081_2975948_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975934_2976762_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976772_2977900_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2978977_2980216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980257_2981520_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981526_2982279_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982330_2982516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982791_2983256_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983287_2983947_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984091_2986200_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986196_2987147_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987250_2987871_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2987974_2988715_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989849_2990974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991019_2991388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991629_2992580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993615_2994158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994543_2995494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995490_2996399_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996525_2997362_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997874_2998984_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999045_2999996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3000187_3000970_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3000983_3001748_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3001760_3003107_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3003132_3004062_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3004177_3005083_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3005100_3006300_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3006372_3007065_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3007113_3009540_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3009584_3010535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3010751_3011120_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3011406_3012333_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3012376_3013387_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3013383_3013818_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3014943_3015732_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3015741_3016524_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3016527_3017619_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3017724_3019200_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3019341_3019890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3019905_3020367_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3020467_3021457_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3021755_3022457_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3022495_3023869_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3023907_3025194_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	3380986	3434727	4106326	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3380986_3381937_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382341_3382986_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383010_3383595_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383695_3384313_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384315_3386031_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386027_3386336_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386352_3386970_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387014_3387317_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387417_3388272_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388459_3388684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388853_3389126_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389543_3389951_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390320_3391115_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391215_3392451_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392519_3393536_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393547_3394924_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394920_3396117_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396113_3397652_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397648_3398908_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400848_3401799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402565_3403660_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403652_3404987_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404940_3405624_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405649_3406813_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406809_3407811_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407810_3408683_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408679_3409429_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409425_3410217_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410213_3411353_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411628_3412414_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412447_3413230_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413233_3413623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414762_3415626_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415661_3416750_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416746_3417697_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418050_3421029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421955_3422834_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424782_3425733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425729_3426197_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426239_3427010_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427030_3427831_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427841_3429251_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429345_3430131_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430370_3431387_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431494_3431887_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432024_3432705_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432709_3433681_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433776_3434727_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	3440882	3500180	4106326	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3440882_3442646_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442757_3443636_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443748_3444564_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444567_3444819_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444903_3445920_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446250_3446472_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448832_3449750_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450247_3451456_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451535_3453107_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453224_3454160_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454348_3455293_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455860_3461578_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461583_3462711_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462766_3463393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463664_3464681_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464776_3465487_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465483_3466473_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466568_3468200_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468202_3468940_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469095_3469968_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470317_3471457_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471453_3472113_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472184_3472817_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472846_3473365_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473375_3474485_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474531_3475386_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475387_3476290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477512_3478463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480217_3481207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481382_3482171_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482167_3483199_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483217_3483781_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483836_3485357_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485620_3486325_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486332_3487061_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487175_3487550_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487592_3488882_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488878_3490048_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490044_3490884_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490943_3491879_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010929591.1|3491891_3492842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492940_3493903_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493934_3494294_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494418_3495321_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495322_3497095_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497129_3497906_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499229_3500180_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	3515118	3584264	4106326	transposase,tRNA	Planktothrix_phage(10.0%)	57	NA	NA
WP_005012808.1|3515118_3516069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516197_3517331_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517374_3518280_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518282_3519983_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3519979_3520900_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520907_3521885_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815317.1|3524951_3525188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525314_3526178_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526266_3527088_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527167_3527905_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527901_3528894_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529046_3529670_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529714_3530863_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533186_3534137_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534477_3535428_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535526_3536477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536773_3537271_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537313_3539089_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539096_3539963_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3539969_3540704_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541873_3542668_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3542957_3543548_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543581_3544910_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3544984_3546130_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546241_3547240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547202_3547637_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549153_3550038_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550034_3551240_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551236_3552097_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552209_3554000_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554040_3554685_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554706_3555015_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555180_3556467_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557900_3558851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560802_3562017_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562122_3563112_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563108_3563717_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563729_3564359_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564355_3564976_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565007_3565799_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566650_3567106_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567124_3568051_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568104_3569391_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570321_3571194_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571190_3572141_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572238_3573189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3573293_3573524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3573650_3574040_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3574056_3576438_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3576430_3577807_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3577822_3578818_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3578836_3579829_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3580069_3580630_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3580634_3580961_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3580997_3581810_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3581820_3582903_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3582989_3584264_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
>prophage 30
NZ_CP017163	Bordetella pertussis strain J108 chromosome, complete genome	4106326	4005395	4070307	4106326	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005395_4005881_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4005969_4006107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006099_4007080_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007346_4008156_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008195_4008876_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008869_4009328_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009339_4009702_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009784_4010468_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010523_4010832_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010850_4011165_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011161_4013636_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013643_4015035_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015031_4015217_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015195_4015897_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015893_4016715_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016695_4017820_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017812_4018832_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019037_4019928_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020172_4020964_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021046_4021421_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021398_4022808_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022800_4024183_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024517_4026122_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026199_4027171_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027181_4028108_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028498_4029449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029618_4030845_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031044_4031911_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031903_4032866_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032966_4033917_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034015_4034966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035064_4036015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036011_4037505_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037501_4040609_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040605_4043674_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043670_4044921_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045101_4045854_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045895_4046540_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046548_4047529_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047628_4048372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048454_4048802_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048899_4049742_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049786_4050674_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050700_4050889_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050986_4052444_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052430_4053957_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053975_4054443_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054442_4055465_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055585_4056326_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056380_4057481_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057482_4058673_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058792_4059809_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060127_4060799_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060795_4061704_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061915_4062563_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066423_4067491_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067501_4068311_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068400_4069174_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069356_4070307_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
