assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002442935.1_ASM244293v1	NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	1	1197098-1197242	1	CRISPRCasFinder	no		RT,csa3,WYL,DEDDh,cas3,DinG	Orphan	ACATTCCTTCCCGGAATGAGATATAGGTGCAAGTCCTATCTTCCGCTCCATTT	53	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,WYL,DEDDh,cas3,DinG,Cas14u_CAS-V	NA,NA|61aa|down_6|NZ_CP017466.1_1203940_1204123_+,NA|138aa|down_7|NZ_CP017466.1_1204326_1204740_+	NA|511aa|up_9|NZ_CP017466.1_1177451_1178984_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|326aa|up_8|NZ_CP017466.1_1179954_1180932_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|349aa|up_7|NZ_CP017466.1_1181055_1182102_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|181aa|up_6|NZ_CP017466.1_1182168_1182711_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|579aa|up_5|NZ_CP017466.1_1182909_1184646_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|365aa|up_4|NZ_CP017466.1_1184749_1185844_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|430aa|up_3|NZ_CP017466.1_1185919_1187209_-	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|152aa|up_2|NZ_CP017466.1_1187291_1187747_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|317aa|up_1|NZ_CP017466.1_1187753_1188704_+	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|151aa|up_0|NZ_CP017466.1_1188798_1189251_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|356aa|down_0|NZ_CP017466.1_1197875_1198943_+	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|488aa|down_1|NZ_CP017466.1_1199189_1200653_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|241aa|down_2|NZ_CP017466.1_1200645_1201368_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|376aa|down_3|NZ_CP017466.1_1201532_1202660_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|157aa|down_4|NZ_CP017466.1_1202664_1203135_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|200aa|down_5|NZ_CP017466.1_1203317_1203917_+	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|61aa|down_6|NZ_CP017466.1_1203940_1204123_+	NA	NA|138aa|down_7|NZ_CP017466.1_1204326_1204740_+	NA	NA|462aa|down_8|NZ_CP017466.1_1204950_1206336_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|276aa|down_9|NZ_CP017466.1_1206595_1207423_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
GCF_002442935.1_ASM244293v1	NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2	1263147-1263230	2	CRISPRCasFinder	no		RT,csa3,WYL,DEDDh,cas3,DinG	Orphan	TTGTGAAATAAATCACAATAAACGAT	26	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,WYL,DEDDh,cas3,DinG,Cas14u_CAS-V	NA|75aa|up_8|NZ_CP017466.1_1252216_1252441_+,NA	NA|158aa|up_9|NZ_CP017466.1_1251520_1251994_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|75aa|up_8|NZ_CP017466.1_1252216_1252441_+	NA	NA|285aa|up_7|NZ_CP017466.1_1252604_1253459_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|494aa|up_6|NZ_CP017466.1_1255068_1256550_+	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	NA|348aa|up_5|NZ_CP017466.1_1257232_1258276_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|211aa|up_4|NZ_CP017466.1_1258282_1258915_+	PRK09289, PRK09289, riboflavin synthase	NA|394aa|up_3|NZ_CP017466.1_1258925_1260107_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|153aa|up_2|NZ_CP017466.1_1260118_1260577_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|334aa|up_1|NZ_CP017466.1_1260833_1261835_-	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	NA|275aa|up_0|NZ_CP017466.1_1262103_1262928_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|319aa|down_0|NZ_CP017466.1_1263261_1264218_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|134aa|down_1|NZ_CP017466.1_1264367_1264769_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|187aa|down_2|NZ_CP017466.1_1265125_1265686_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|down_3|NZ_CP017466.1_1265682_1266636_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|390aa|down_4|NZ_CP017466.1_1266745_1267915_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|805aa|down_5|NZ_CP017466.1_1268302_1270717_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|down_6|NZ_CP017466.1_1270738_1271050_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|420aa|down_7|NZ_CP017466.1_1271565_1272825_-	pfam03486, HI0933_like, HI0933-like protein	NA|546aa|down_8|NZ_CP017466.1_1272954_1274592_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|234aa|down_9|NZ_CP017466.1_1274588_1275290_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
