assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	1	9522-9607	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	12	9552-9577|9552-9577|9552-9577|9552-9577|9552-9577|9552-9577|9552-9577|9552-9577|9552-9577|9552-9577|9552-9577|9552-9577	NZ_CP020741.1_639770-639745|NZ_CP020741.1_1173008-1172983|NZ_CP020741.1_1309992-1310017|NZ_CP020741.1_802236-802211|NZ_CP020741.1_802292-802267|NZ_CP020741.1_848210-848235|NZ_CP020741.1_1870968-1870943|NZ_CP020741.1_2053849-2053874|NZ_CP020741.1_2229057-2229082|NZ_CP020741.1_2345818-2345793|NZ_CP020741.1_2149743-2149718|NZ_CP020741.1_2150081-2150056	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|64aa|up_6|NZ_CP020741.1_4999_5191_+,NA|166aa|up_5|NZ_CP020741.1_5797_6295_-,NA|64aa|up_4|NZ_CP020741.1_6751_6943_+,NA	NA|NA	NA	NA|253aa|up_8|NZ_CP020741.1_2278_3037_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_7|NZ_CP020741.1_3026_4907_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_6|NZ_CP020741.1_4999_5191_+	NA	NA|166aa|up_5|NZ_CP020741.1_5797_6295_-	NA	NA|64aa|up_4|NZ_CP020741.1_6751_6943_+	NA	NA|67aa|up_3|NZ_CP020741.1_7334_7535_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP020741.1_7661_8231_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP020741.1_8481_8877_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP020741.1_8944_9298_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP020741.1_9907_10747_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP020741.1_10789_11509_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP020741.1_11508_13386_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP020741.1_13452_14832_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP020741.1_14975_15329_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP020741.1_15449_15587_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|454aa|down_6|NZ_CP020741.1_16316_17678_+	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|378aa|down_7|NZ_CP020741.1_17955_19089_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|162aa|down_8|NZ_CP020741.1_19279_19765_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|82aa|down_9|NZ_CP020741.1_20213_20459_+	TIGR02988, YaaA_near_RecF, S4 domain protein YaaA
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	2	792750-792835	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CAATGCGAGTTGGGGTGGGGCCCCAACA	28	1	1	792778-792807	NZ_CP020741.1_833849-833820	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|69aa|up_9|NZ_CP020741.1_779593_779800_+,NA|34aa|down_1|NZ_CP020741.1_794278_794380_+,NA|52aa|down_8|NZ_CP020741.1_802544_802700_+	NA|69aa|up_9|NZ_CP020741.1_779593_779800_+	NA	NA|237aa|up_8|NZ_CP020741.1_779896_780607_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP020741.1_780590_781595_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP020741.1_782068_784009_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP020741.1_784279_786163_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP020741.1_786174_787956_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP020741.1_788177_789155_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP020741.1_789147_790662_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP020741.1_790901_791960_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP020741.1_792118_792661_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP020741.1_793268_794186_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP020741.1_794278_794380_+	NA	NA|502aa|down_2|NZ_CP020741.1_794457_795963_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP020741.1_796302_796803_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP020741.1_796822_797689_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP020741.1_798489_798888_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP020741.1_798850_800956_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP020741.1_801073_802045_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP020741.1_802544_802700_+	NA	NA|324aa|down_9|NZ_CP020741.1_802738_803710_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	3	970008-970165	1,3	PILER-CR,CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT,TCTTTTCGAAATTCTCTGTGTTGGGGCCC	39,29	1	12	970115-970133|970115-970133|970115-970133|970115-970133|970115-970133|970115-970133|970115-970133|970115-970133|970115-970133|970115-970133|970115-970133|970115-970133	NZ_CP020741.1_839165-839183|NZ_CP020741.1_848334-848352|NZ_CP020741.1_1310059-1310077|NZ_CP020741.1_1310117-1310135|NZ_CP020741.1_2005577-2005595|NZ_CP020741.1_2345753-2345735|NZ_CP020741.1_201288-201306|NZ_CP020741.1_639704-639686|NZ_CP020741.1_949842-949824|NZ_CP020741.1_1168750-1168732|NZ_CP020741.1_1384696-1384714|NZ_CP020741.1_1725395-1725413	NA:NA	2,1	2	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|192aa|up_9|NZ_CP020741.1_956446_957022_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NZ_CP020741.1_957026_957551_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NZ_CP020741.1_957566_958142_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NZ_CP020741.1_958301_961778_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NZ_CP020741.1_961778_965432_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NZ_CP020741.1_965597_966500_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NZ_CP020741.1_966827_967217_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NZ_CP020741.1_967388_968705_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NZ_CP020741.1_968756_969581_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NZ_CP020741.1_969694_970003_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NZ_CP020741.1_970656_972471_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NZ_CP020741.1_972673_975283_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NZ_CP020741.1_975341_976211_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|382aa|down_3|NZ_CP020741.1_976320_977466_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|214aa|down_4|NZ_CP020741.1_977449_978091_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|172aa|down_5|NZ_CP020741.1_979185_979701_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_6|NZ_CP020741.1_980011_980446_+	pfam03642, MAP, MAP domain	NA|62aa|down_7|NZ_CP020741.1_980702_980888_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_8|NZ_CP020741.1_981182_982124_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|415aa|down_9|NZ_CP020741.1_982135_983380_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	4	1088533-1088625	4	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	AAAAGCCCCTAACAACTAAAGGTTGTAAGG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|45aa|down_0|NZ_CP020741.1_1088634_1088769_-,NA|432aa|down_1|NZ_CP020741.1_1088920_1090216_+	NA|224aa|up_9|NZ_CP020741.1_1076327_1076999_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP020741.1_1076991_1079181_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP020741.1_1079159_1080644_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP020741.1_1080636_1081665_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP020741.1_1081667_1082234_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP020741.1_1082248_1083727_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP020741.1_1083748_1084996_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP020741.1_1085261_1086068_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP020741.1_1086060_1087461_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP020741.1_1087475_1088051_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP020741.1_1088634_1088769_-	NA	NA|432aa|down_1|NZ_CP020741.1_1088920_1090216_+	NA	NA|391aa|down_2|NZ_CP020741.1_1090640_1091813_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP020741.1_1091866_1092409_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP020741.1_1092562_1092829_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP020741.1_1092831_1094550_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP020741.1_1094786_1095020_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP020741.1_1095217_1096579_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP020741.1_1096575_1097595_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP020741.1_1097727_1098390_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	5	1172700-1172846	2	PILER-CR	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGACAAAAAATCAG	44	1	29	1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771|1172744-1172771	NZ_CP020741.1_2311410-2311383|NZ_CP020741.1_386631-386658|NZ_CP020741.1_386686-386713|NZ_CP020741.1_884860-884833|NZ_CP020741.1_904899-904926|NZ_CP020741.1_1811540-1811567|NZ_CP020741.1_1813757-1813784|NZ_CP020741.1_2345755-2345782|NZ_CP020741.1_9674-9647|NZ_CP020741.1_311542-311569|NZ_CP020741.1_639648-639675|NZ_CP020741.1_792725-792752|NZ_CP020741.1_802340-802367|NZ_CP020741.1_884533-884506|NZ_CP020741.1_884805-884778|NZ_CP020741.1_1072424-1072397|NZ_CP020741.1_1168696-1168723|NZ_CP020741.1_1310057-1310030|NZ_CP020741.1_1310115-1310088|NZ_CP020741.1_1310173-1310146|NZ_CP020741.1_1705583-1705610|NZ_CP020741.1_1811484-1811511|NZ_CP020741.1_1904961-1904988|NZ_CP020741.1_2014926-2014899|NZ_CP020741.1_2059586-2059613|NZ_CP020741.1_2064004-2063977|NZ_CP020741.1_2345697-2345724|NZ_CP020741.1_2792998-2792971|NZ_CP020741.1_2830069-2830042	NA	2	2	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|169aa|up_7|NZ_CP020741.1_1166612_1167119_+,NA|62aa|up_4|NZ_CP020741.1_1169070_1169256_-,NA|78aa|up_3|NZ_CP020741.1_1169874_1170108_-,NA|49aa|up_1|NZ_CP020741.1_1172216_1172363_+,NA|75aa|up_0|NZ_CP020741.1_1172319_1172544_+,NA|76aa|down_6|NZ_CP020741.1_1180011_1180239_+	NA|110aa|up_9|NZ_CP020741.1_1164844_1165174_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|133aa|up_8|NZ_CP020741.1_1165543_1165942_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP020741.1_1166612_1167119_+	NA	NA|166aa|up_6|NZ_CP020741.1_1167377_1167875_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP020741.1_1168028_1168379_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP020741.1_1169070_1169256_-	NA	NA|78aa|up_3|NZ_CP020741.1_1169874_1170108_-	NA	NA|320aa|up_2|NZ_CP020741.1_1170584_1171544_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP020741.1_1172216_1172363_+	NA	NA|75aa|up_0|NZ_CP020741.1_1172319_1172544_+	NA	NA|239aa|down_0|NZ_CP020741.1_1173213_1173930_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP020741.1_1174037_1174763_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP020741.1_1174857_1175583_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP020741.1_1176020_1177022_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP020741.1_1177044_1177977_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_5|NZ_CP020741.1_1178198_1179704_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP020741.1_1180011_1180239_+	NA	NA|316aa|down_7|NZ_CP020741.1_1180544_1181492_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP020741.1_1181741_1181930_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP020741.1_1182842_1182977_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	6	1247351-1247443	5	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|215aa|up_9|NZ_CP020741.1_1237225_1237870_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP020741.1_1237876_1238518_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP020741.1_1238899_1239088_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP020741.1_1239530_1239905_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP020741.1_1239919_1241566_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP020741.1_1241755_1243816_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP020741.1_1244017_1244590_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP020741.1_1244594_1245581_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP020741.1_1245573_1246500_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP020741.1_1246492_1247227_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP020741.1_1247532_1247766_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP020741.1_1247881_1248613_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP020741.1_1248759_1252326_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP020741.1_1252325_1253576_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP020741.1_1253562_1253895_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP020741.1_1253920_1255288_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP020741.1_1255633_1255909_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP020741.1_1256096_1256600_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP020741.1_1256599_1257337_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP020741.1_1257439_1257790_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	7	1455407-1455486	6	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|68aa|up_5|NZ_CP020741.1_1446887_1447091_-,NA	NA|379aa|up_9|NZ_CP020741.1_1441237_1442374_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|448aa|up_8|NZ_CP020741.1_1442447_1443791_-	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|629aa|up_7|NZ_CP020741.1_1444015_1445902_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|264aa|up_6|NZ_CP020741.1_1445915_1446707_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|68aa|up_5|NZ_CP020741.1_1446887_1447091_-	NA	NA|270aa|up_4|NZ_CP020741.1_1447119_1447929_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|423aa|up_3|NZ_CP020741.1_1448508_1449777_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|933aa|up_2|NZ_CP020741.1_1449790_1452589_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|452aa|up_1|NZ_CP020741.1_1452877_1454233_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|up_0|NZ_CP020741.1_1454229_1454889_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|down_0|NZ_CP020741.1_1456030_1456645_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|357aa|down_1|NZ_CP020741.1_1456661_1457732_-	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|170aa|down_2|NZ_CP020741.1_1457743_1458253_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|497aa|down_3|NZ_CP020741.1_1458652_1460143_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|74aa|down_4|NZ_CP020741.1_1460334_1460556_-	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_5|NZ_CP020741.1_1460555_1461056_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|143aa|down_6|NZ_CP020741.1_1461067_1461496_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|178aa|down_7|NZ_CP020741.1_1461488_1462022_-	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|280aa|down_8|NZ_CP020741.1_1462111_1462951_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|160aa|down_9|NZ_CP020741.1_1462965_1463445_-	pfam00186, DHFR_1, Dihydrofolate reductase
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	8	2004124-2004205	7	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,DinG,csa3	Unclear	TGTTGGGGCCCCGCCAACCTGCATT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|92aa|up_6|NZ_CP020741.1_1998321_1998597_+,NA|129aa|up_1|NZ_CP020741.1_2002579_2002966_-,NA|138aa|down_1|NZ_CP020741.1_2005888_2006302_-,NA|37aa|down_2|NZ_CP020741.1_2006330_2006441_-,NA|31aa|down_6|NZ_CP020741.1_2009446_2009539_-	NA|419aa|up_9|NZ_CP020741.1_1996244_1997501_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP020741.1_1997503_1997704_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP020741.1_1997850_1998315_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP020741.1_1998321_1998597_+	NA	NA|406aa|up_5|NZ_CP020741.1_1998874_2000092_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP020741.1_2000204_2000834_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP020741.1_2000823_2001867_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP020741.1_2001863_2002565_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP020741.1_2002579_2002966_-	NA	NA|253aa|up_0|NZ_CP020741.1_2003182_2003941_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP020741.1_2004469_2005456_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP020741.1_2005888_2006302_-	NA	NA|37aa|down_2|NZ_CP020741.1_2006330_2006441_-	NA	NA|244aa|down_3|NZ_CP020741.1_2006526_2007258_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP020741.1_2007259_2008573_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP020741.1_2008864_2009365_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP020741.1_2009446_2009539_-	NA	DEDDh|185aa|down_7|NZ_CP020741.1_2009755_2010310_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP020741.1_2010376_2011447_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP020741.1_2011693_2012224_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	9	2063895-2063980	8	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TGTTGAGGCCCCACCCCAACTTACATTGT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|59aa|up_6|NZ_CP020741.1_2054035_2054212_-,NA|33aa|up_5|NZ_CP020741.1_2054453_2054552_-,NA	NA|227aa|up_9|NZ_CP020741.1_2051540_2052221_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|299aa|up_8|NZ_CP020741.1_2052221_2053118_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|127aa|up_7|NZ_CP020741.1_2053114_2053495_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_6|NZ_CP020741.1_2054035_2054212_-	NA	NA|33aa|up_5|NZ_CP020741.1_2054453_2054552_-	NA	NA|429aa|up_4|NZ_CP020741.1_2054751_2056038_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|331aa|up_3|NZ_CP020741.1_2058442_2059435_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|NZ_CP020741.1_2059927_2060944_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP020741.1_2060965_2062021_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP020741.1_2062456_2063680_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP020741.1_2064120_2065428_+	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|539aa|down_1|NZ_CP020741.1_2065968_2067585_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP020741.1_2067660_2067945_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP020741.1_2068119_2068863_+	pfam02517, Abi, CAAX protease self-immunity	NA|400aa|down_4|NZ_CP020741.1_2068887_2070087_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP020741.1_2070283_2070910_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP020741.1_2071270_2072056_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP020741.1_2072654_2072789_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|190aa|down_8|NZ_CP020741.1_2073024_2073594_+	smart00793, AgrB, Accessory gene regulator B	NA|47aa|down_9|NZ_CP020741.1_2073590_2073731_+	pfam05931, AgrD, Staphylococcal AgrD protein
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	10	2311432-2311516	9	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTATGCTGACTTT	30	1	3	2311462-2311486|2311462-2311486|2311462-2311486	NZ_CP020741.1_1172893-1172869|NZ_CP020741.1_1899789-1899813|NZ_CP020741.1_2311518-2311542	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_9|NZ_CP020741.1_2301939_2302104_+,NA|106aa|up_8|NZ_CP020741.1_2302348_2302666_+,NA|84aa|up_5|NZ_CP020741.1_2307790_2308042_+,NA|57aa|up_0|NZ_CP020741.1_2311182_2311353_+,NA	NA|55aa|up_9|NZ_CP020741.1_2301939_2302104_+	NA	NA|106aa|up_8|NZ_CP020741.1_2302348_2302666_+	NA	NA|1056aa|up_7|NZ_CP020741.1_2302852_2306020_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP020741.1_2306136_2307402_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP020741.1_2307790_2308042_+	NA	NA|255aa|up_4|NZ_CP020741.1_2308033_2308798_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP020741.1_2308960_2309401_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP020741.1_2309393_2310605_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP020741.1_2310706_2311057_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP020741.1_2311182_2311353_+	NA	NA|341aa|down_0|NZ_CP020741.1_2311693_2312716_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP020741.1_2312735_2313335_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP020741.1_2313341_2313575_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP020741.1_2313580_2314027_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP020741.1_2314040_2314526_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP020741.1_2314522_2315782_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP020741.1_2315844_2316339_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP020741.1_2316340_2316847_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP020741.1_2316877_2317882_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP020741.1_2318050_2318656_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	11	2466677-2466769	10	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TTCTTCAAATTTATTTGTTAGAAAG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|35aa|up_2|NZ_CP020741.1_2464330_2464435_+,NA|32aa|down_0|NZ_CP020741.1_2466973_2467069_-	NA|200aa|up_9|NZ_CP020741.1_2457807_2458407_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP020741.1_2458425_2458788_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP020741.1_2459042_2460293_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP020741.1_2460389_2461121_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP020741.1_2461117_2461837_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP020741.1_2461817_2462597_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP020741.1_2462717_2464157_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP020741.1_2464330_2464435_+	NA	NA|229aa|up_1|NZ_CP020741.1_2464588_2465275_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP020741.1_2465600_2466467_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|32aa|down_0|NZ_CP020741.1_2466973_2467069_-	NA	NA|437aa|down_1|NZ_CP020741.1_2467163_2468474_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP020741.1_2468965_2469895_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP020741.1_2470461_2471409_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP020741.1_2471410_2472388_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP020741.1_2472439_2472907_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP020741.1_2472917_2473610_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP020741.1_2473620_2474736_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP020741.1_2474713_2475721_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP020741.1_2475722_2477081_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_002442975.1_ASM244297v1	NZ_CP020741	Staphylococcus aureus strain HZW450 chromosome, complete genome	12	2829917-2830002	11	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	12	2829947-2829972|2829947-2829972|2829947-2829972|2829947-2829972|2829947-2829972|2829947-2829972|2829947-2829972|2829947-2829972|2829947-2829972|2829947-2829972|2829947-2829972|2829947-2829972	NZ_CP020741.1_639770-639745|NZ_CP020741.1_1173008-1172983|NZ_CP020741.1_1309992-1310017|NZ_CP020741.1_802236-802211|NZ_CP020741.1_802292-802267|NZ_CP020741.1_848210-848235|NZ_CP020741.1_1870968-1870943|NZ_CP020741.1_2053849-2053874|NZ_CP020741.1_2229057-2229082|NZ_CP020741.1_2345818-2345793|NZ_CP020741.1_2149743-2149718|NZ_CP020741.1_2150081-2150056	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|64aa|up_6|NZ_CP020741.1_2825394_2825586_+,NA|166aa|up_5|NZ_CP020741.1_2826192_2826690_-,NA|64aa|up_4|NZ_CP020741.1_2827146_2827338_+,NA	NA|171aa|up_9|NZ_CP020741.1_2821871_2822384_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_8|NZ_CP020741.1_2822673_2823432_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_7|NZ_CP020741.1_2823421_2825302_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_6|NZ_CP020741.1_2825394_2825586_+	NA	NA|166aa|up_5|NZ_CP020741.1_2826192_2826690_-	NA	NA|64aa|up_4|NZ_CP020741.1_2827146_2827338_+	NA	NA|67aa|up_3|NZ_CP020741.1_2827729_2827930_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP020741.1_2828056_2828626_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP020741.1_2828876_2829272_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP020741.1_2829339_2829693_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|282aa|down_0|NZ_CP020741.1_2830302_2831148_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
