assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002442995.2_ASM244299v2	NZ_CP020753	Shigella flexneri 1c strain Y394 chromosome, complete genome	1	64144-64259	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3	NA,NA	NA|126aa|up_9|NZ_CP020753.1_50148_50526_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|NZ_CP020753.1_50528_51350_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|NZ_CP020753.1_51346_52336_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|NZ_CP020753.1_52335_53622_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|NZ_CP020753.1_53674_56029_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|NZ_CP020753.1_56283_57099_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|NZ_CP020753.1_57215_57875_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP020753.1_57886_60793_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP020753.1_60957_63309_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP020753.1_63383_64079_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP020753.1_64278_65781_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP020753.1_65791_67492_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP020753.1_67830_68709_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP020753.1_68794_69559_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP020753.1_69672_70371_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP020753.1_70354_71965_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP020753.1_71940_72924_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|NZ_CP020753.1_73087_74743_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|NZ_CP020753.1_74831_74963_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|325aa|down_9|NZ_CP020753.1_75064_76039_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
GCF_002442995.2_ASM244299v2	NZ_CP020753	Shigella flexneri 1c strain Y394 chromosome, complete genome	2	2386957-2387083	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3	NA,NA	NA|259aa|up_9|NZ_CP020753.1_2364539_2365316_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|53aa|up_8|NZ_CP020753.1_2367533_2367692_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|390aa|up_7|NZ_CP020753.1_2369244_2370413_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|208aa|up_6|NZ_CP020753.1_2372761_2373385_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_5|NZ_CP020753.1_2375218_2377846_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_4|NZ_CP020753.1_2377992_2378715_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|645aa|up_3|NZ_CP020753.1_2378842_2380777_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|552aa|up_2|NZ_CP020753.1_2380786_2382442_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|410aa|up_1|NZ_CP020753.1_2382505_2383734_+	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|762aa|up_0|NZ_CP020753.1_2384620_2386906_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP020753.1_2387139_2388270_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP020753.1_2388269_2388524_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP020753.1_2388577_2389228_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP020753.1_2389690_2390767_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP020753.1_2390771_2392130_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP020753.1_2392402_2394031_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP020753.1_2394020_2395280_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP020753.1_2395276_2396467_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|317aa|down_8|NZ_CP020753.1_2396659_2397610_+	PRK09956, PRK09956, ISNCY family transposase	NA|157aa|down_9|NZ_CP020753.1_2397650_2398121_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
GCF_002442995.2_ASM244299v2	NZ_CP020753	Shigella flexneri 1c strain Y394 chromosome, complete genome	3	3212828-3212929	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3	Orphan	TACAAAACACAACAACATCAACAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3	NA|55aa|up_0|NZ_CP020753.1_3212622_3212787_+,NA	NA|128aa|up_9|NZ_CP020753.1_3206568_3206952_+	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA	NA|102aa|up_8|NZ_CP020753.1_3207490_3207796_+	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|135aa|up_7|NZ_CP020753.1_3207798_3208203_+	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|100aa|up_6|NZ_CP020753.1_3208192_3208492_+	pfam13997, YqjK, YqjK-like protein	NA|129aa|up_5|NZ_CP020753.1_3208587_3208974_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|329aa|up_4|NZ_CP020753.1_3209043_3210030_+	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|123aa|up_3|NZ_CP020753.1_3210322_3210691_+	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|299aa|up_2|NZ_CP020753.1_3210897_3211794_-	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|234aa|up_1|NZ_CP020753.1_3211898_3212600_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|55aa|up_0|NZ_CP020753.1_3212622_3212787_+	NA	NA|437aa|down_0|NZ_CP020753.1_3212998_3214309_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|444aa|down_1|NZ_CP020753.1_3214336_3215668_-	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|455aa|down_2|NZ_CP020753.1_3215942_3217307_-	PRK15040, PRK15040, L-serine ammonia-lyase	NA|130aa|down_3|NZ_CP020753.1_3217378_3217768_-	PRK11401, PRK11401, enamine/imine deaminase	NA|730aa|down_4|NZ_CP020753.1_3217781_3219971_-	cd01678, PFL1, Pyruvate formate lyase 1	NA|403aa|down_5|NZ_CP020753.1_3220004_3221213_-	PRK12379, PRK12379, propionate kinase	NA|444aa|down_6|NZ_CP020753.1_3221238_3222570_-	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|330aa|down_7|NZ_CP020753.1_3222591_3223581_-	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|313aa|down_8|NZ_CP020753.1_3223679_3224618_-	PRK10341, PRK10341, transcriptional regulator TdcA	NA|115aa|down_9|NZ_CP020753.1_3224807_3225152_+	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional
