assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	1	333627-334425	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023577.1_333142_333325_-,NA	NA|398aa|up_9|NZ_CP023577.1_323320_324514_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023577.1_324549_326232_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023577.1_326248_328444_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023577.1_328557_329691_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023577.1_329687_330308_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023577.1_330404_330986_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023577.1_330915_331641_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023577.1_331730_332651_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023577.1_332690_333119_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023577.1_333142_333325_-	NA	NA|835aa|down_0|NZ_CP023577.1_336539_339044_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023577.1_339334_340945_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023577.1_340968_341877_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023577.1_342100_343996_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023577.1_343992_345609_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023577.1_345605_349598_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023577.1_349594_349903_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023577.1_349905_351447_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023577.1_351495_351789_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023577.1_351818_352109_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	2	337693-338631	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NNNNNNCCGCCGGCGCCGCCG	21	2	7	338551-338577|338596-338613|338596-338613|338596-338613|338596-338613|338596-338613|338596-338613	NZ_CP023577.1_335782-335808|NZ_CP023577.1_335842-335859|NZ_CP023577.1_673107-673124|NZ_CP023577.1_1216953-1216936|NZ_CP023577.1_2423618-2423635|NZ_CP023577.1_3738337-3738354|NZ_CP023577.1_3739684-3739701	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP023577.1_333142_333325_-,NA	NA|561aa|up_9|NZ_CP023577.1_324549_326232_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP023577.1_326248_328444_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP023577.1_328557_329691_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP023577.1_329687_330308_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP023577.1_330404_330986_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP023577.1_330915_331641_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP023577.1_331730_332651_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP023577.1_332690_333119_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP023577.1_333142_333325_-	NA	NA|615aa|up_0|NZ_CP023577.1_333419_335264_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|NZ_CP023577.1_339334_340945_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023577.1_340968_341877_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023577.1_342100_343996_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023577.1_343992_345609_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023577.1_345605_349598_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023577.1_349594_349903_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023577.1_349905_351447_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023577.1_351495_351789_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023577.1_351818_352109_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023577.1_352119_353007_+	pfam14011, ESX-1_EspG, EspG family
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	3	366434-367132	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366722-366763|366797-366829	NZ_CP023577.1_374754-374795|NZ_CP023577.1_373569-373601	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023577.1_363446_363749_+,NA|161aa|down_1|NZ_CP023577.1_376543_377026_-,NA|410aa|down_5|NZ_CP023577.1_379142_380372_+	NA|262aa|up_9|NZ_CP023577.1_358141_358927_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023577.1_358915_359719_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023577.1_359728_361126_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023577.1_361304_363080_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023577.1_363222_363450_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023577.1_363446_363749_+	NA	NA|74aa|up_3|NZ_CP023577.1_363796_364018_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023577.1_364014_364440_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023577.1_364575_365208_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023577.1_365204_366113_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023577.1_375884_376556_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023577.1_376543_377026_-	NA	NA|239aa|down_2|NZ_CP023577.1_377083_377800_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023577.1_377901_378558_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023577.1_378627_379119_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023577.1_379142_380372_+	NA	NA|621aa|down_6|NZ_CP023577.1_380526_382389_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023577.1_382460_382847_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023577.1_382849_383512_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023577.1_383572_384457_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	4	631225-631362	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631243-631260|631243-631260|631327-631344	NZ_CP023577.1_22466-22483|NZ_CP023577.1_1412007-1412024|NZ_CP023577.1_973174-973191	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP023577.1_622063_622225_-,NA|478aa|up_0|NZ_CP023577.1_628240_629674_-,NA|450aa|down_2|NZ_CP023577.1_632997_634347_-,NA|93aa|down_5|NZ_CP023577.1_635877_636156_-	NA|325aa|up_9|NZ_CP023577.1_619833_620808_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP023577.1_620849_622067_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP023577.1_622063_622225_-	NA	NA|106aa|up_6|NZ_CP023577.1_622271_622589_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP023577.1_622735_624520_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP023577.1_624415_625423_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP023577.1_625504_626383_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP023577.1_626399_627194_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP023577.1_627190_628231_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP023577.1_628240_629674_-	NA	NA|211aa|down_0|NZ_CP023577.1_631685_632318_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP023577.1_632314_632977_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP023577.1_632997_634347_-	NA	NA|381aa|down_3|NZ_CP023577.1_634358_635501_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP023577.1_635515_635818_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP023577.1_635877_636156_-	NA	NA|418aa|down_6|NZ_CP023577.1_636152_637406_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP023577.1_637525_637912_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP023577.1_637974_638859_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP023577.1_638954_639857_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	5	691975-692051	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023577.1_677657_677873_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023577.1_677869_678277_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023577.1_678336_679023_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023577.1_679176_681810_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023577.1_681832_684220_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023577.1_684357_685080_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023577.1_685076_685874_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP023577.1_685875_686763_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023577.1_686768_687983_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023577.1_689006_690452_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023577.1_693186_694737_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023577.1_694788_695181_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023577.1_695177_695435_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023577.1_695617_696853_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023577.1_697103_697517_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023577.1_697513_697750_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023577.1_697853_698360_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023577.1_698473_698944_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023577.1_698987_699749_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023577.1_699805_700117_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	6	926554-927501	4	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927337-927372|927337-927372|927337-927372	NZ_CP023577.1_675071-675036|NZ_CP023577.1_1213686-1213721|NZ_CP023577.1_2423725-2423690	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023577.1_931502_932054_-,NA|81aa|down_8|NZ_CP023577.1_937517_937760_+	NA|685aa|up_9|NZ_CP023577.1_914190_916245_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023577.1_916410_917580_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023577.1_917667_918684_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023577.1_918845_919487_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023577.1_919567_920623_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023577.1_920674_921067_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023577.1_921124_921547_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023577.1_921508_921799_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023577.1_921903_922809_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023577.1_922827_923643_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023577.1_927770_930410_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023577.1_930877_931522_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023577.1_931502_932054_-	NA	NA|218aa|down_3|NZ_CP023577.1_932203_932857_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023577.1_932927_933956_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023577.1_934644_935415_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023577.1_935501_936314_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023577.1_936381_937242_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023577.1_937517_937760_+	NA	NA|431aa|down_9|NZ_CP023577.1_938036_939329_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	7	1191253-1191361	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|394aa|up_9|NZ_CP023577.1_1179333_1180515_+	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|544aa|up_8|NZ_CP023577.1_1180621_1182253_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|158aa|up_7|NZ_CP023577.1_1183444_1183918_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023577.1_1183951_1184815_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023577.1_1184819_1185677_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023577.1_1185677_1186760_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023577.1_1186840_1187260_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023577.1_1187371_1187938_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023577.1_1187934_1188330_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023577.1_1188357_1190361_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023577.1_1192446_1194210_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023577.1_1194206_1194980_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023577.1_1194991_1196029_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023577.1_1196215_1197052_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023577.1_1197167_1198019_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023577.1_1198092_1199310_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023577.1_1199362_1200307_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023577.1_1200529_1201597_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023577.1_1201653_1203048_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023577.1_1203249_1203972_+	pfam06271, RDD, RDD family
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	8	1211887-1212743	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	65	1212270-1212291|1212315-1212330|1212453-1212474|1212453-1212474|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588|1212570-1212588	NZ_CP023577.1_2960481-2960460|NZ_CP023577.1_2088577-2088562|NZ_CP023577.1_837384-837405|NZ_CP023577.1_1217581-1217602|NZ_CP023577.1_674735-674717|NZ_CP023577.1_1213413-1213431|NZ_CP023577.1_1217554-1217572|NZ_CP023577.1_1217626-1217644|NZ_CP023577.1_1630644-1630626|NZ_CP023577.1_1633470-1633452|NZ_CP023577.1_1990781-1990763|NZ_CP023577.1_2061505-2061487|NZ_CP023577.1_2802031-2802013|NZ_CP023577.1_2805559-2805541|NZ_CP023577.1_150164-150182|NZ_CP023577.1_335184-335166|NZ_CP023577.1_335637-335619|NZ_CP023577.1_335688-335670|NZ_CP023577.1_335697-335679|NZ_CP023577.1_363024-363006|NZ_CP023577.1_443389-443371|NZ_CP023577.1_546733-546715|NZ_CP023577.1_623926-623944|NZ_CP023577.1_624148-624166|NZ_CP023577.1_673901-673883|NZ_CP023577.1_840167-840185|NZ_CP023577.1_1090916-1090934|NZ_CP023577.1_1091564-1091582|NZ_CP023577.1_1095623-1095605|NZ_CP023577.1_1212942-1212960|NZ_CP023577.1_1213332-1213350|NZ_CP023577.1_1217974-1217992|NZ_CP023577.1_1489150-1489132|NZ_CP023577.1_1618608-1618590|NZ_CP023577.1_1619061-1619043|NZ_CP023577.1_1635983-1635965|NZ_CP023577.1_1635992-1635974|NZ_CP023577.1_1864272-1864254|NZ_CP023577.1_1864800-1864782|NZ_CP023577.1_1990055-1990037|NZ_CP023577.1_2001417-2001435|NZ_CP023577.1_2088775-2088757|NZ_CP023577.1_2303454-2303436|NZ_CP023577.1_2356901-2356883|NZ_CP023577.1_2419551-2419569|NZ_CP023577.1_2423638-2423620|NZ_CP023577.1_2569130-2569112|NZ_CP023577.1_2693425-2693443|NZ_CP023577.1_2795346-2795328|NZ_CP023577.1_2795928-2795910|NZ_CP023577.1_3054518-3054536|NZ_CP023577.1_3054617-3054635|NZ_CP023577.1_3705439-3705457|NZ_CP023577.1_3737400-3737382|NZ_CP023577.1_3738024-3738006|NZ_CP023577.1_3738224-3738206|NZ_CP023577.1_3738357-3738339|NZ_CP023577.1_3802220-3802238|NZ_CP023577.1_3802403-3802421|NZ_CP023577.1_3802571-3802589|NZ_CP023577.1_3930381-3930399|NZ_CP023577.1_3932111-3932129|NZ_CP023577.1_3940618-3940636|NZ_CP023577.1_4031586-4031568|NZ_CP023577.1_4094112-4094130	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023577.1_1207319_1207586_+,NA|61aa|down_3|NZ_CP023577.1_1215161_1215344_+,NA|35aa|down_4|NZ_CP023577.1_1215453_1215558_+	NA|465aa|up_9|NZ_CP023577.1_1201653_1203048_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023577.1_1203249_1203972_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023577.1_1204003_1205170_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023577.1_1205240_1205735_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023577.1_1205920_1206355_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023577.1_1206456_1207323_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023577.1_1207319_1207586_+	NA	NA|674aa|up_2|NZ_CP023577.1_1207572_1209594_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023577.1_1209692_1210421_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023577.1_1210531_1211320_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023577.1_1213976_1214297_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023577.1_1214449_1214884_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP023577.1_1214985_1215150_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023577.1_1215161_1215344_+	NA	NA|35aa|down_4|NZ_CP023577.1_1215453_1215558_+	NA	NA|152aa|down_5|NZ_CP023577.1_1215535_1215991_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023577.1_1216405_1218967_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023577.1_1219184_1220123_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023577.1_1220510_1221791_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023577.1_1221895_1222723_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	9	1572126-1573198	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023577.1_1563889_1564207_+,NA	NA|103aa|up_9|NZ_CP023577.1_1561404_1561713_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023577.1_1561709_1563329_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023577.1_1563889_1564207_+	NA	NA|209aa|up_6|NZ_CP023577.1_1564341_1564968_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023577.1_1565033_1565366_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023577.1_1565381_1566638_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023577.1_1566765_1567977_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023577.1_1568049_1569528_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023577.1_1569524_1570910_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023577.1_1570987_1572022_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023577.1_1574051_1574453_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023577.1_1574449_1574707_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023577.1_1574789_1575749_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023577.1_1575773_1576736_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023577.1_1576869_1577472_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023577.1_1577552_1579520_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023577.1_1579537_1580362_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023577.1_1580530_1581013_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023577.1_1581084_1581909_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023577.1_1582105_1583044_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	10	1636561-1636787	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP023577.1_1623069_1623183_-,NA|137aa|up_7|NZ_CP023577.1_1623232_1623643_-,NA|288aa|down_2|NZ_CP023577.1_1640625_1641489_+	NA|162aa|up_9|NZ_CP023577.1_1622152_1622638_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP023577.1_1623069_1623183_-	NA	NA|137aa|up_7|NZ_CP023577.1_1623232_1623643_-	NA	NA|248aa|up_6|NZ_CP023577.1_1623659_1624403_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP023577.1_1624399_1625311_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP023577.1_1625363_1626908_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP023577.1_1626904_1628026_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP023577.1_1628042_1630145_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP023577.1_1630583_1634573_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP023577.1_1634974_1635901_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023577.1_1638326_1639592_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023577.1_1639619_1640606_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023577.1_1640625_1641489_+	NA	NA|311aa|down_3|NZ_CP023577.1_1641438_1642371_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023577.1_1642482_1643268_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023577.1_1643264_1644206_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023577.1_1644308_1646084_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023577.1_1646131_1646938_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023577.1_1646934_1649475_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023577.1_1649471_1650665_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	11	2061623-2062199	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGGCGCCGCCGGCCCCGCCGTTGCCGA	28	3	4	2061912-2061928|2061957-2061976|2061957-2061976|2062056-2062075	NZ_CP023577.1_3674900-3674916|NZ_CP023577.1_836530-836511|NZ_CP023577.1_2356702-2356721|NZ_CP023577.1_1864010-1864029	NA	9	9	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|222aa|up_2|NZ_CP023577.1_2057485_2058151_+,NA	NA|410aa|up_9|NZ_CP023577.1_2049878_2051108_+	pfam00823, PPE, PPE family	NA|469aa|up_8|NZ_CP023577.1_2051239_2052646_+	pfam00823, PPE, PPE family	NA|119aa|up_7|NZ_CP023577.1_2052890_2053247_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|235aa|up_6|NZ_CP023577.1_2053400_2054105_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|401aa|up_5|NZ_CP023577.1_2054114_2055317_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|144aa|up_4|NZ_CP023577.1_2055638_2056070_-	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|301aa|up_3|NZ_CP023577.1_2056478_2057381_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|222aa|up_2|NZ_CP023577.1_2057485_2058151_+	NA	NA|235aa|up_1|NZ_CP023577.1_2058213_2058918_+	pfam13305, WHG, WHG domain	NA|488aa|up_0|NZ_CP023577.1_2059552_2061016_+	PRK07121, PRK07121, FAD-binding protein	NA|640aa|down_0|NZ_CP023577.1_2062766_2064686_-	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|548aa|down_1|NZ_CP023577.1_2064756_2066400_+	PRK05858, PRK05858, acetolactate synthase	NA|809aa|down_2|NZ_CP023577.1_2066414_2068841_+	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|210aa|down_3|NZ_CP023577.1_2069037_2069667_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|308aa|down_4|NZ_CP023577.1_2069659_2070583_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_5|NZ_CP023577.1_2070644_2070977_+	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|293aa|down_6|NZ_CP023577.1_2070993_2071872_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|135aa|down_7|NZ_CP023577.1_2071909_2072314_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|163aa|down_8|NZ_CP023577.1_2072553_2073042_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|248aa|down_9|NZ_CP023577.1_2073038_2073782_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	12	2088247-2088501	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088328-2088345|2088328-2088345|2088418-2088435	NZ_CP023577.1_401050-401033|NZ_CP023577.1_607381-607364|NZ_CP023577.1_3450132-3450115	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023577.1_2087606_2087870_-,NA	NA|165aa|up_9|NZ_CP023577.1_2073900_2074395_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023577.1_2074798_2075476_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023577.1_2075834_2078660_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023577.1_2078886_2079747_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023577.1_2079787_2080654_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023577.1_2080658_2082545_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023577.1_2082560_2084594_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023577.1_2084713_2086939_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023577.1_2087214_2087610_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023577.1_2087606_2087870_-	NA	NA|346aa|down_0|NZ_CP023577.1_2089638_2090676_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023577.1_2090675_2092043_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023577.1_2092216_2093653_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023577.1_2093688_2095140_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023577.1_2095169_2096120_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023577.1_2096134_2096551_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023577.1_2096828_2097251_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023577.1_2097299_2097602_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023577.1_2097598_2097913_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023577.1_2097912_2099646_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	13	2163340-2163444	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023577.1_2152387_2152858_-,NA|136aa|up_1|NZ_CP023577.1_2159883_2160291_-,NA|127aa|down_6|NZ_CP023577.1_2176513_2176894_-	NA|157aa|up_9|NZ_CP023577.1_2152387_2152858_-	NA	NA|216aa|up_8|NZ_CP023577.1_2153197_2153845_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023577.1_2153851_2156074_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023577.1_2156111_2156555_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023577.1_2156668_2157262_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023577.1_2157344_2157950_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023577.1_2158049_2159054_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023577.1_2159153_2159906_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023577.1_2159883_2160291_-	NA	NA|767aa|up_0|NZ_CP023577.1_2160425_2162726_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023577.1_2167612_2170576_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023577.1_2171024_2171489_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023577.1_2171586_2172450_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023577.1_2172487_2173759_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023577.1_2174030_2175146_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023577.1_2175136_2176477_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023577.1_2176513_2176894_-	NA	NA|621aa|down_7|NZ_CP023577.1_2177050_2178913_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023577.1_2178920_2179400_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023577.1_2179636_2180410_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	14	2168778-2168997	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023577.1_2159883_2160291_-,NA|127aa|down_5|NZ_CP023577.1_2176513_2176894_-	NA|216aa|up_9|NZ_CP023577.1_2153197_2153845_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023577.1_2153851_2156074_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023577.1_2156111_2156555_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023577.1_2156668_2157262_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023577.1_2157344_2157950_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023577.1_2158049_2159054_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023577.1_2159153_2159906_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023577.1_2159883_2160291_-	NA	NA|767aa|up_1|NZ_CP023577.1_2160425_2162726_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023577.1_2162895_2167275_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023577.1_2171024_2171489_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023577.1_2171586_2172450_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023577.1_2172487_2173759_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023577.1_2174030_2175146_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023577.1_2175136_2176477_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023577.1_2176513_2176894_-	NA	NA|621aa|down_6|NZ_CP023577.1_2177050_2178913_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023577.1_2178920_2179400_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023577.1_2179636_2180410_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP023577.1_2181203_2181848_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	15	3119109-3120463	2,9,6	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023577.1_3112388_3112643_-,NA|135aa|up_7|NZ_CP023577.1_3112790_3113195_+,NA|64aa|up_6|NZ_CP023577.1_3113191_3113383_+,NA|86aa|up_4|NZ_CP023577.1_3114969_3115227_+,NA|104aa|up_3|NZ_CP023577.1_3115331_3115643_+,NA|203aa|up_2|NZ_CP023577.1_3116062_3116671_+,NA	NA|92aa|up_9|NZ_CP023577.1_3111937_3112213_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023577.1_3112388_3112643_-	NA	NA|135aa|up_7|NZ_CP023577.1_3112790_3113195_+	NA	NA|64aa|up_6|NZ_CP023577.1_3113191_3113383_+	NA	NA|385aa|up_5|NZ_CP023577.1_3113581_3114736_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023577.1_3114969_3115227_+	NA	NA|104aa|up_3|NZ_CP023577.1_3115331_3115643_+	NA	NA|203aa|up_2|NZ_CP023577.1_3116062_3116671_+	NA	NA|470aa|up_1|NZ_CP023577.1_3116741_3118151_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023577.1_3118147_3118960_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023577.1_3120489_3121751_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023577.1_3123548_3123890_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023577.1_3123890_3124907_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023577.1_3124919_3126068_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023577.1_3126163_3127291_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023577.1_3127287_3128196_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023577.1_3128176_3128887_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023577.1_3128896_3129271_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023577.1_3129267_3131706_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023577.1_3131702_3132425_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	16	3121786-3123500	10,7,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023577.1_3112388_3112643_-,NA|135aa|up_8|NZ_CP023577.1_3112790_3113195_+,NA|64aa|up_7|NZ_CP023577.1_3113191_3113383_+,NA|86aa|up_5|NZ_CP023577.1_3114969_3115227_+,NA|104aa|up_4|NZ_CP023577.1_3115331_3115643_+,NA|203aa|up_3|NZ_CP023577.1_3116062_3116671_+,NA	NA|85aa|up_9|NZ_CP023577.1_3112388_3112643_-	NA	NA|135aa|up_8|NZ_CP023577.1_3112790_3113195_+	NA	NA|64aa|up_7|NZ_CP023577.1_3113191_3113383_+	NA	NA|385aa|up_6|NZ_CP023577.1_3113581_3114736_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023577.1_3114969_3115227_+	NA	NA|104aa|up_4|NZ_CP023577.1_3115331_3115643_+	NA	NA|203aa|up_3|NZ_CP023577.1_3116062_3116671_+	NA	NA|470aa|up_2|NZ_CP023577.1_3116741_3118151_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023577.1_3118147_3118960_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023577.1_3120489_3121751_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023577.1_3123548_3123890_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023577.1_3123890_3124907_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023577.1_3124919_3126068_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023577.1_3126163_3127291_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023577.1_3127287_3128196_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023577.1_3128176_3128887_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023577.1_3128896_3129271_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023577.1_3129267_3131706_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023577.1_3131702_3132425_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023577.1_3132824_3133370_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	17	3740551-3741092	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023577.1_3755193_3755481_-,NA|87aa|down_9|NZ_CP023577.1_3768601_3768862_-	NA|282aa|up_9|NZ_CP023577.1_3719845_3720691_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023577.1_3721165_3721606_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023577.1_3721639_3722509_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023577.1_3722529_3723540_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023577.1_3723824_3724457_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023577.1_3724523_3725753_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023577.1_3726035_3727385_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023577.1_3727396_3728536_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023577.1_3728532_3729264_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023577.1_3729272_3736844_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023577.1_3743063_3743321_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023577.1_3743576_3753050_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023577.1_3753675_3754122_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023577.1_3754158_3754899_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023577.1_3755193_3755481_-	NA	NA|3717aa|down_5|NZ_CP023577.1_3755817_3766968_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023577.1_3767211_3768006_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023577.1_3768087_3768459_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023577.1_3768356_3768575_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023577.1_3768601_3768862_-	NA
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	18	3947751-3948639	9	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCACCGGCGGNNCCGGCGGC	25	5	7	3947902-3947990|3948016-3948116|3948142-3948227|3948343-3948401|3948343-3948401|3948427-3948473|3948427-3948473	NZ_CP023577.1_3947311-3947399|NZ_CP023577.1_3947425-3947525|NZ_CP023577.1_3947200-3947285|NZ_CP023577.1_3948934-3948992|NZ_CP023577.1_3949534-3949592|NZ_CP023577.1_3949018-3949064|NZ_CP023577.1_3949618-3949664	NA	9	9	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023577.1_3953282_3954122_+	NA|64aa|up_9|NZ_CP023577.1_3921926_3922118_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|NZ_CP023577.1_3922332_3923535_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|NZ_CP023577.1_3923559_3924681_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|NZ_CP023577.1_3924751_3926260_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_5|NZ_CP023577.1_3926430_3930576_+	pfam00934, PE, PE family	NA|1902aa|up_4|NZ_CP023577.1_3930866_3936572_+	pfam00934, PE, PE family	NA|516aa|up_3|NZ_CP023577.1_3936738_3938286_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_2|NZ_CP023577.1_3938282_3939119_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1779aa|up_1|NZ_CP023577.1_3939478_3944815_+	pfam00934, PE, PE family	NA|219aa|up_0|NZ_CP023577.1_3944943_3945600_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023577.1_3950675_3952322_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023577.1_3952395_3953187_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023577.1_3953282_3954122_+	NA	NA|399aa|down_3|NZ_CP023577.1_3954176_3955373_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023577.1_3955401_3956112_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023577.1_3956176_3957220_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023577.1_3957372_3958284_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023577.1_3958299_3959364_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_8|NZ_CP023577.1_3960606_3961638_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NZ_CP023577.1_3961651_3962176_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_002446955.1_ASM244695v1	NZ_CP023577	Mycobacterium tuberculosis strain CSV11678 chromosome, complete genome	19	4110529-4110617	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023577.1_4101115_4101886_-,NA|119aa|up_3|NZ_CP023577.1_4107020_4107377_+,NA|52aa|up_2|NZ_CP023577.1_4107476_4107632_+,NA|233aa|up_0|NZ_CP023577.1_4109633_4110332_-,NA|126aa|down_6|NZ_CP023577.1_4115852_4116230_+	NA|288aa|up_9|NZ_CP023577.1_4099497_4100361_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023577.1_4101115_4101886_-	NA	NA|549aa|up_7|NZ_CP023577.1_4101882_4103529_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023577.1_4103525_4104389_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023577.1_4104381_4105308_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023577.1_4105309_4106935_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023577.1_4107020_4107377_+	NA	NA|52aa|up_2|NZ_CP023577.1_4107476_4107632_+	NA	NA|652aa|up_1|NZ_CP023577.1_4107642_4109598_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023577.1_4109633_4110332_-	NA	NA|173aa|down_0|NZ_CP023577.1_4110677_4111196_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023577.1_4111196_4112180_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023577.1_4112172_4113366_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023577.1_4113371_4114193_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023577.1_4114324_4115008_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023577.1_4115007_4115745_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023577.1_4115852_4116230_+	NA	NA|225aa|down_7|NZ_CP023577.1_4116328_4117003_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023577.1_4117106_4117901_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023577.1_4117907_4118363_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
