The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	4411353	2941069	2976435	4411353	tRNA,transposase,capsid,integrase,head,terminase,protease	Tupanvirus(11.11%)	41	2969870:2969897	2980852:2980879
WP_003413486.1|2941069_2943148_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943256_2943484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943480_2944866_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945210_2945711_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945727_2946168_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946314_2946992_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946976_2947330_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947342_2947768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947764_2948439_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948516_2949338_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949473_2950367_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950369_2951188_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951202_2952384_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952442_2952874_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953387_2954629_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954938_2955301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955647_2956772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956773_2957313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957452_2958751_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958789_2959071_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959215_2959701_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959727_2959985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959985_2962322_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962350_2962593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962593_2963271_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963466_2964123_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964285_2964732_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964906_2965239_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965358_2965718_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965819_2966278_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966413_2966794_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966790_2968287_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968476_2968713_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968785_2968959_+	hypothetical protein	NA	NA	NA	NA	NA
2969870:2969897	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970003_2970435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970431_2971430_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971443_2971908_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972040_2973301_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973675_2975115_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975122_2975656_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975808_2976435_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980852:2980879	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	4411353	3710246	3796175	4411353	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710246_3711507_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711562_3711724_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_096867985.1|3711745_3713275_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713207_3714146_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714154_3715522_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715590_3716808_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716903_3718412_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718408_3719560_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719750_3720596_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721070_3721511_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721544_3722414_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722434_3723445_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723729_3724362_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724428_3725658_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725940_3727290_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727301_3728441_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728437_3729169_+	methyltransferase	NA	NA	NA	NA	NA
WP_096863751.1|3729177_3736749_-	PPE family protein	NA	NA	NA	NA	NA
WP_052636922.1|3743011_3743269_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_070901562.1|3743524_3752998_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753623_3754070_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754106_3754847_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755141_3755429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755765_3766916_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767159_3767954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768035_3768407_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768304_3768523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768549_3768810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768924_3769314_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769327_3769621_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769617_3770463_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770586_3770862_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770858_3771116_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771157_3772348_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772464_3772833_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772829_3773381_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773387_3773969_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773949_3774318_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774295_3774688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774684_3777315_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777550_3778015_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778381_3780148_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780148_3780793_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780791_3781226_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781314_3784554_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784745_3786086_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786127_3787303_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787356_3787461_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787539_3788181_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788181_3788430_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788434_3789862_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789969_3790623_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790661_3792167_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792171_3793062_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793070_3794681_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794625_3794871_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794913_3796175_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
