assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	1	366443-367141	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366731-366772|366806-366838	NZ_CP023581.1_374762-374803|NZ_CP023581.1_373577-373609	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023581.1_363455_363758_+,NA|161aa|down_1|NZ_CP023581.1_376551_377034_-,NA|410aa|down_5|NZ_CP023581.1_379150_380380_+	NA|262aa|up_9|NZ_CP023581.1_358150_358936_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023581.1_358924_359728_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023581.1_359737_361135_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023581.1_361313_363089_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023581.1_363231_363459_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023581.1_363455_363758_+	NA	NA|74aa|up_3|NZ_CP023581.1_363805_364027_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023581.1_364023_364449_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023581.1_364584_365217_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023581.1_365213_366122_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023581.1_375892_376564_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023581.1_376551_377034_-	NA	NA|239aa|down_2|NZ_CP023581.1_377091_377808_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023581.1_377909_378566_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023581.1_378635_379127_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023581.1_379150_380380_+	NA	NA|621aa|down_6|NZ_CP023581.1_380534_382397_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023581.1_382468_382855_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023581.1_382857_383520_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023581.1_383580_384465_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	2	691909-691985	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023581.1_677593_677809_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023581.1_677805_678213_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023581.1_678272_678959_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023581.1_679112_681746_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023581.1_681768_684156_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023581.1_684293_685016_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023581.1_685012_685810_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP023581.1_685811_686699_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023581.1_686704_687919_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023581.1_688942_690388_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023581.1_693120_694671_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023581.1_694722_695115_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023581.1_695111_695369_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023581.1_695551_696787_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023581.1_697037_697451_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023581.1_697447_697684_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023581.1_697787_698294_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023581.1_698407_698878_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023581.1_698921_699683_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023581.1_699739_700051_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	3	926505-927452	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927288-927323|927288-927323|927288-927323	NZ_CP023581.1_675012-674977|NZ_CP023581.1_1213634-1213669|NZ_CP023581.1_2423669-2423634	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023581.1_931462_932014_-,NA|81aa|down_8|NZ_CP023581.1_937477_937720_+	NA|685aa|up_9|NZ_CP023581.1_914141_916196_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023581.1_916361_917531_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023581.1_917618_918635_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023581.1_918796_919438_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023581.1_919518_920574_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023581.1_920625_921018_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023581.1_921075_921498_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023581.1_921459_921750_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023581.1_921854_922760_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023581.1_922778_923594_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP023581.1_927721_930370_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023581.1_930837_931482_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023581.1_931462_932014_-	NA	NA|218aa|down_3|NZ_CP023581.1_932163_932817_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023581.1_932887_933916_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023581.1_934604_935375_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023581.1_935461_936274_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023581.1_936341_937202_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023581.1_937477_937720_+	NA	NA|431aa|down_9|NZ_CP023581.1_937996_939289_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	4	1191210-1191318	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023581.1_1180577_1182209_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023581.1_1182284_1183349_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023581.1_1183401_1183875_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023581.1_1183908_1184772_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023581.1_1184776_1185634_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023581.1_1185634_1186717_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023581.1_1186797_1187217_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023581.1_1187328_1187895_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023581.1_1187891_1188287_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023581.1_1188314_1190318_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023581.1_1192403_1194167_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023581.1_1194163_1194937_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023581.1_1194948_1195986_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023581.1_1196172_1197009_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023581.1_1197124_1197976_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023581.1_1198049_1199267_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023581.1_1199319_1200264_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023581.1_1200486_1201554_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023581.1_1201610_1203005_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023581.1_1203206_1203929_+	pfam06271, RDD, RDD family
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	5	1211844-1212691	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	2	71	1212401-1212422|1212401-1212422|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536|1212518-1212536	NZ_CP023581.1_837317-837338|NZ_CP023581.1_1217526-1217547|NZ_CP023581.1_674676-674658|NZ_CP023581.1_1213361-1213379|NZ_CP023581.1_1217499-1217517|NZ_CP023581.1_1217571-1217589|NZ_CP023581.1_1630584-1630566|NZ_CP023581.1_1633401-1633383|NZ_CP023581.1_1990710-1990692|NZ_CP023581.1_2061434-2061416|NZ_CP023581.1_2061881-2061863|NZ_CP023581.1_2061980-2061962|NZ_CP023581.1_2801987-2801969|NZ_CP023581.1_2805515-2805497|NZ_CP023581.1_150187-150205|NZ_CP023581.1_333772-333754|NZ_CP023581.1_335191-335173|NZ_CP023581.1_335644-335626|NZ_CP023581.1_335695-335677|NZ_CP023581.1_335704-335686|NZ_CP023581.1_337974-337956|NZ_CP023581.1_338103-338085|NZ_CP023581.1_338370-338352|NZ_CP023581.1_338399-338417|NZ_CP023581.1_338493-338475|NZ_CP023581.1_363033-363015|NZ_CP023581.1_443343-443325|NZ_CP023581.1_546686-546668|NZ_CP023581.1_623876-623894|NZ_CP023581.1_624098-624116|NZ_CP023581.1_673842-673824|NZ_CP023581.1_840100-840118|NZ_CP023581.1_1090873-1090891|NZ_CP023581.1_1091521-1091539|NZ_CP023581.1_1095579-1095561|NZ_CP023581.1_1212890-1212908|NZ_CP023581.1_1213280-1213298|NZ_CP023581.1_1217919-1217937|NZ_CP023581.1_1489096-1489078|NZ_CP023581.1_1618548-1618530|NZ_CP023581.1_1619001-1618983|NZ_CP023581.1_1635914-1635896|NZ_CP023581.1_1635923-1635905|NZ_CP023581.1_1864202-1864184|NZ_CP023581.1_1864730-1864712|NZ_CP023581.1_1989984-1989966|NZ_CP023581.1_2001346-2001364|NZ_CP023581.1_2088704-2088686|NZ_CP023581.1_2303393-2303375|NZ_CP023581.1_2356845-2356827|NZ_CP023581.1_2419495-2419513|NZ_CP023581.1_2423582-2423564|NZ_CP023581.1_2569076-2569058|NZ_CP023581.1_2693375-2693393|NZ_CP023581.1_2795302-2795284|NZ_CP023581.1_2795884-2795866|NZ_CP023581.1_3054475-3054493|NZ_CP023581.1_3054574-3054592|NZ_CP023581.1_3705328-3705346|NZ_CP023581.1_3737305-3737287|NZ_CP023581.1_3737929-3737911|NZ_CP023581.1_3738172-3738154|NZ_CP023581.1_3738305-3738287|NZ_CP023581.1_3802168-3802186|NZ_CP023581.1_3802351-3802369|NZ_CP023581.1_3802519-3802537|NZ_CP023581.1_3930341-3930359|NZ_CP023581.1_3932071-3932089|NZ_CP023581.1_3940575-3940593|NZ_CP023581.1_4031550-4031532|NZ_CP023581.1_4094075-4094093	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023581.1_1207276_1207543_+,NA|61aa|down_3|NZ_CP023581.1_1215109_1215292_+,NA|35aa|down_4|NZ_CP023581.1_1215401_1215506_+	NA|465aa|up_9|NZ_CP023581.1_1201610_1203005_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023581.1_1203206_1203929_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023581.1_1203960_1205127_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023581.1_1205197_1205692_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023581.1_1205877_1206312_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023581.1_1206413_1207280_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023581.1_1207276_1207543_+	NA	NA|674aa|up_2|NZ_CP023581.1_1207529_1209551_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023581.1_1209649_1210378_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023581.1_1210488_1211277_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023581.1_1213924_1214245_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023581.1_1214397_1214832_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP023581.1_1214933_1215098_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023581.1_1215109_1215292_+	NA	NA|35aa|down_4|NZ_CP023581.1_1215401_1215506_+	NA	NA|152aa|down_5|NZ_CP023581.1_1215483_1215939_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|853aa|down_6|NZ_CP023581.1_1216353_1218912_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023581.1_1219129_1220068_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023581.1_1220455_1221736_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023581.1_1221840_1222668_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	6	1572072-1573143	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023581.1_1563835_1564153_+,NA	NA|103aa|up_9|NZ_CP023581.1_1561350_1561659_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023581.1_1561655_1563275_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023581.1_1563835_1564153_+	NA	NA|209aa|up_6|NZ_CP023581.1_1564287_1564914_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023581.1_1564979_1565312_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023581.1_1565327_1566584_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023581.1_1566711_1567923_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023581.1_1567995_1569474_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023581.1_1569470_1570856_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023581.1_1570933_1571968_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023581.1_1573997_1574399_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023581.1_1574395_1574653_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023581.1_1574735_1575695_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023581.1_1575719_1576682_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023581.1_1576815_1577418_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023581.1_1577498_1579466_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023581.1_1579483_1580308_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023581.1_1580476_1580959_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023581.1_1581030_1581855_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023581.1_1582051_1582990_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	7	1636492-1636718	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP023581.1_1623009_1623123_-,NA|137aa|up_7|NZ_CP023581.1_1623172_1623583_-,NA|288aa|down_2|NZ_CP023581.1_1640556_1641420_+	NA|162aa|up_9|NZ_CP023581.1_1622092_1622578_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP023581.1_1623009_1623123_-	NA	NA|137aa|up_7|NZ_CP023581.1_1623172_1623583_-	NA	NA|248aa|up_6|NZ_CP023581.1_1623599_1624343_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP023581.1_1624339_1625251_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP023581.1_1625303_1626848_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP023581.1_1626844_1627966_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP023581.1_1627982_1630085_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1327aa|up_1|NZ_CP023581.1_1630523_1634504_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP023581.1_1634905_1635832_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023581.1_1638257_1639523_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023581.1_1639550_1640537_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023581.1_1640556_1641420_+	NA	NA|311aa|down_3|NZ_CP023581.1_1641369_1642302_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023581.1_1642413_1643199_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023581.1_1643195_1644137_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023581.1_1644239_1646015_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023581.1_1646062_1646869_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023581.1_1646865_1649406_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023581.1_1649402_1650596_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	8	2088176-2088430	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088257-2088274|2088257-2088274|2088347-2088364	NZ_CP023581.1_401058-401041|NZ_CP023581.1_607331-607314|NZ_CP023581.1_3450084-3450067	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023581.1_2087535_2087799_-,NA	NA|165aa|up_9|NZ_CP023581.1_2073829_2074324_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023581.1_2074727_2075405_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023581.1_2075763_2078589_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023581.1_2078815_2079676_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023581.1_2079716_2080583_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023581.1_2080587_2082474_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023581.1_2082489_2084523_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023581.1_2084642_2086868_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023581.1_2087143_2087539_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023581.1_2087535_2087799_-	NA	NA|346aa|down_0|NZ_CP023581.1_2089567_2090605_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023581.1_2090604_2091972_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023581.1_2092145_2093582_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023581.1_2093617_2095069_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023581.1_2095098_2096049_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023581.1_2096063_2096480_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023581.1_2096757_2097180_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023581.1_2097228_2097531_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023581.1_2097527_2097842_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023581.1_2097841_2099575_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	9	2168695-2168914	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023581.1_2159812_2160220_-,NA|127aa|down_5|NZ_CP023581.1_2176430_2176811_-	NA|216aa|up_9|NZ_CP023581.1_2153126_2153774_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023581.1_2153780_2156003_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023581.1_2156040_2156484_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023581.1_2156597_2157191_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023581.1_2157273_2157879_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023581.1_2157978_2158983_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023581.1_2159082_2159835_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023581.1_2159812_2160220_-	NA	NA|368aa|up_1|NZ_CP023581.1_2160354_2161458_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP023581.1_2161457_2162654_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|155aa|down_0|NZ_CP023581.1_2170941_2171406_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023581.1_2171503_2172367_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023581.1_2172404_2173676_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023581.1_2173947_2175063_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023581.1_2175053_2176394_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023581.1_2176430_2176811_-	NA	NA|621aa|down_6|NZ_CP023581.1_2176967_2178830_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023581.1_2178837_2179317_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023581.1_2179553_2180327_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023581.1_2180330_2181098_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	10	3119066-3120420	2,7,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,18	18	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023581.1_3112345_3112600_-,NA|135aa|up_7|NZ_CP023581.1_3112747_3113152_+,NA|64aa|up_6|NZ_CP023581.1_3113148_3113340_+,NA|86aa|up_4|NZ_CP023581.1_3114926_3115184_+,NA|104aa|up_3|NZ_CP023581.1_3115288_3115600_+,NA|203aa|up_2|NZ_CP023581.1_3116019_3116628_+,NA	NA|92aa|up_9|NZ_CP023581.1_3111894_3112170_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023581.1_3112345_3112600_-	NA	NA|135aa|up_7|NZ_CP023581.1_3112747_3113152_+	NA	NA|64aa|up_6|NZ_CP023581.1_3113148_3113340_+	NA	NA|385aa|up_5|NZ_CP023581.1_3113538_3114693_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023581.1_3114926_3115184_+	NA	NA|104aa|up_3|NZ_CP023581.1_3115288_3115600_+	NA	NA|203aa|up_2|NZ_CP023581.1_3116019_3116628_+	NA	NA|470aa|up_1|NZ_CP023581.1_3116698_3118108_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023581.1_3118104_3118917_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023581.1_3120446_3121708_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023581.1_3123505_3123847_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023581.1_3123847_3124864_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023581.1_3124876_3126025_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023581.1_3126120_3127248_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023581.1_3127244_3128153_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023581.1_3128133_3128844_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023581.1_3128853_3129228_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023581.1_3129224_3131663_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023581.1_3131659_3132382_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	11	3121743-3123457	8,4,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023581.1_3112345_3112600_-,NA|135aa|up_8|NZ_CP023581.1_3112747_3113152_+,NA|64aa|up_7|NZ_CP023581.1_3113148_3113340_+,NA|86aa|up_5|NZ_CP023581.1_3114926_3115184_+,NA|104aa|up_4|NZ_CP023581.1_3115288_3115600_+,NA|203aa|up_3|NZ_CP023581.1_3116019_3116628_+,NA	NA|85aa|up_9|NZ_CP023581.1_3112345_3112600_-	NA	NA|135aa|up_8|NZ_CP023581.1_3112747_3113152_+	NA	NA|64aa|up_7|NZ_CP023581.1_3113148_3113340_+	NA	NA|385aa|up_6|NZ_CP023581.1_3113538_3114693_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023581.1_3114926_3115184_+	NA	NA|104aa|up_4|NZ_CP023581.1_3115288_3115600_+	NA	NA|203aa|up_3|NZ_CP023581.1_3116019_3116628_+	NA	NA|470aa|up_2|NZ_CP023581.1_3116698_3118108_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023581.1_3118104_3118917_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023581.1_3120446_3121708_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023581.1_3123505_3123847_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023581.1_3123847_3124864_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023581.1_3124876_3126025_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023581.1_3126120_3127248_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023581.1_3127244_3128153_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023581.1_3128133_3128844_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023581.1_3128853_3129228_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023581.1_3129224_3131663_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023581.1_3131659_3132382_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023581.1_3132781_3133327_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	12	3740499-3741040	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023581.1_3755141_3755429_-,NA|87aa|down_9|NZ_CP023581.1_3768549_3768810_-	NA|282aa|up_9|NZ_CP023581.1_3719750_3720596_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023581.1_3721070_3721511_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023581.1_3721544_3722414_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023581.1_3722434_3723445_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023581.1_3723729_3724362_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023581.1_3724428_3725658_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023581.1_3725940_3727290_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023581.1_3727301_3728441_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023581.1_3728437_3729169_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023581.1_3729177_3736749_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023581.1_3743011_3743269_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023581.1_3743524_3752998_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023581.1_3753623_3754070_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023581.1_3754106_3754847_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023581.1_3755141_3755429_-	NA	NA|3717aa|down_5|NZ_CP023581.1_3755765_3766916_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023581.1_3767159_3767954_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023581.1_3768035_3768407_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023581.1_3768304_3768523_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023581.1_3768549_3768810_-	NA
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	13	3948183-3949934	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948774-3948809|3948774-3948809|3948774-3948809|3948774-3948809|3948774-3948809|3949665-3949691|3949665-3949691|3949665-3949691|3949665-3949691	NZ_CP023581.1_3946890-3946925|NZ_CP023581.1_3947232-3947267|NZ_CP023581.1_3947823-3947858|NZ_CP023581.1_3948174-3948209|NZ_CP023581.1_3932626-3932661|NZ_CP023581.1_361973-361999|NZ_CP023581.1_3941076-3941102|NZ_CP023581.1_3941412-3941438|NZ_CP023581.1_3941758-3941784	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023581.1_3953249_3954089_+	NA|318aa|up_9|NZ_CP023581.1_3920899_3921853_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023581.1_3921877_3922069_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023581.1_3922283_3923486_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023581.1_3923510_3924632_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023581.1_3924702_3926211_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1385aa|up_4|NZ_CP023581.1_3926381_3930536_+	pfam00934, PE, PE family	NA|1902aa|up_3|NZ_CP023581.1_3930826_3936532_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023581.1_3936698_3938246_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023581.1_3938242_3939079_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023581.1_3944910_3945567_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023581.1_3950642_3952289_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023581.1_3952362_3953154_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023581.1_3953249_3954089_+	NA	NA|399aa|down_3|NZ_CP023581.1_3954143_3955340_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023581.1_3955368_3956079_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023581.1_3956143_3957187_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023581.1_3957339_3958251_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023581.1_3958266_3959331_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023581.1_3959347_3960532_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023581.1_3960573_3961605_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002447035.1_ASM244703v1	NZ_CP023581	Mycobacterium tuberculosis strain LN2358 chromosome, complete genome	14	4110492-4110580	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023581.1_4101078_4101849_-,NA|119aa|up_3|NZ_CP023581.1_4106983_4107340_+,NA|52aa|up_2|NZ_CP023581.1_4107439_4107595_+,NA|233aa|up_0|NZ_CP023581.1_4109596_4110295_-,NA|126aa|down_6|NZ_CP023581.1_4115815_4116193_+	NA|288aa|up_9|NZ_CP023581.1_4099460_4100324_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023581.1_4101078_4101849_-	NA	NA|549aa|up_7|NZ_CP023581.1_4101845_4103492_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023581.1_4103488_4104352_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023581.1_4104344_4105271_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023581.1_4105272_4106898_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023581.1_4106983_4107340_+	NA	NA|52aa|up_2|NZ_CP023581.1_4107439_4107595_+	NA	NA|652aa|up_1|NZ_CP023581.1_4107605_4109561_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023581.1_4109596_4110295_-	NA	NA|173aa|down_0|NZ_CP023581.1_4110640_4111159_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023581.1_4111159_4112143_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023581.1_4112135_4113329_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023581.1_4113334_4114156_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023581.1_4114287_4114971_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023581.1_4114970_4115708_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023581.1_4115815_4116193_+	NA	NA|225aa|down_7|NZ_CP023581.1_4116291_4116966_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023581.1_4117071_4117866_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023581.1_4117872_4118328_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
