The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	4411385	889007	947571	4411385	bacteriocin,tRNA,transposase,protease	Burkholderia_virus(16.67%)	54	NA	NA
WP_087902221.1|889007_890268_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935676.1|890323_891418_+|transposase	IS110-like element IS1547 family transposase	transposase	NA	NA	NA	NA
WP_003404092.1|891407_892205_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003404098.1|892201_893209_-	Dyp-type peroxidase	NA	NA	NA	NA	NA
WP_003404103.1|893253_894555_+	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_003898592.1|894566_894914_+	VOC family protein	NA	NA	NA	NA	NA
WP_003404111.1|894907_895564_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010924301.1|895755_898020_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	64.2	1.8e-273
WP_003404117.1|898016_898646_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003404120.1|898766_899723_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_003898594.1|899667_901266_-	exopolysaccharide phosphotransferase CpsY	NA	NA	NA	NA	NA
WP_003404127.1|901570_901960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900214.1|902046_903630_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.6	2.6e-45
WP_003404132.1|903660_904755_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	37.3	2.3e-56
WP_003404135.1|904840_905023_-	DUF3073 domain-containing protein	NA	NA	NA	NA	NA
WP_003404137.1|905169_906276_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_003404139.1|906358_907228_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_003898596.1|907273_907954_-	FABP family protein	NA	NA	NA	NA	NA
WP_003404278.1|908116_908419_-	DUF1416 domain-containing protein	NA	NA	NA	NA	NA
WP_003404293.1|908420_909254_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003900215.1|909546_909969_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_003404298.1|909965_910778_-	DUF2993 domain-containing protein	NA	NA	NA	NA	NA
WP_003898599.1|910907_911675_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.5	3.1e-15
WP_003404307.1|911671_912619_+	mycothiol synthase	NA	NA	NA	NA	NA
WP_003404312.1|912661_913438_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.1	1.6e-16
WP_003404314.1|913493_914135_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_003898600.1|914192_916247_-	LCP family protein	NA	NA	NA	NA	NA
WP_003898601.1|916412_917582_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003404321.1|917669_918686_-	acyl-ACP desaturase	NA	NA	NA	NA	NA
WP_003404326.1|918847_919489_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003898602.1|919569_920625_+	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
WP_003404335.1|920676_921069_-	Ni(II)/Co(II)-sensing metalloregulatory transcriptional repressor KmtR	NA	NA	NA	NA	NA
WP_003404336.1|921126_921549_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_003900218.1|921510_921801_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003404349.1|921905_922811_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003404352.1|922829_923645_-	TIGR04255 family protein	NA	NA	NA	NA	NA
WP_015345040.1|927772_930412_-	PE family protein	NA	NA	NA	NA	NA
WP_003404362.1|930879_931524_+	sensor domain-containing protein	NA	NA	NA	NA	NA
WP_003898607.1|931504_932056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003906455.1|932205_932859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003404368.1|932929_933958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003898609.1|934646_935417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003404373.1|935503_936316_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003404376.1|936383_937244_-	proline-specific peptidase family protein	NA	NA	NA	NA	NA
WP_003404379.1|937519_937762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003404382.1|938038_939331_+	MFS transporter	NA	NA	NA	NA	NA
WP_003404384.1|939314_940319_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
WP_003404388.1|940382_941033_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003898611.1|941116_942394_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003404392.1|942606_944121_-	multicopper oxidase MmcO	NA	NA	NA	NA	NA
WP_003901025.1|944269_944662_+	lipoprotein LpqS	NA	NA	NA	NA	NA
WP_003404395.1|944864_945983_+	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA	NA
WP_003404402.1|945982_947242_+	MFS transporter	NA	NA	NA	NA	NA
WP_003404404.1|947238_947571_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	4411385	2941121	2980752	4411385	integrase,head,tRNA,protease,capsid,terminase,transposase	Mycobacterium_phage(27.27%)	47	2969923:2969950	2980905:2980932
WP_003413486.1|2941121_2943200_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943308_2943536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943532_2944918_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945262_2945763_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945779_2946220_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946366_2947044_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947028_2947382_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947394_2947820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003900535.1|2947816_2948491_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948568_2949390_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949525_2950419_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950421_2951240_-	universal stress protein	NA	NA	NA	NA	NA
WP_003413598.1|2952495_2952927_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_010886153.1|2953440_2954682_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954991_2955354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955700_2956825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956826_2957366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010924557.1|2957505_2958804_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958842_2959124_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959268_2959754_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959780_2960038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2960038_2962375_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962403_2962646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962646_2963324_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963519_2964176_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964338_2964785_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964959_2965292_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965411_2965771_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965872_2966331_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966466_2966847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966843_2968340_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968529_2968766_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968838_2969012_+	hypothetical protein	NA	NA	NA	NA	NA
2969923:2969950	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970056_2970488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970484_2971483_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971496_2971961_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972093_2973354_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973728_2975168_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975175_2975709_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975861_2976488_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2976519_2976843_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2976922_2977168_-	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003899416.1|2977164_2978592_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2978593_2978986_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2978982_2979243_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2979259_2979622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2979624_2980752_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2980905:2980932	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
