assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	1	337684-338622	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NNNNNNCCGCCGGCGCCGCCG	21	2	7	338542-338568|338587-338604|338587-338604|338587-338604|338587-338604|338587-338604|338587-338604	NZ_CP023597.1_335775-335801|NZ_CP023597.1_335833-335850|NZ_CP023597.1_673093-673110|NZ_CP023597.1_1216956-1216939|NZ_CP023597.1_2423626-2423643|NZ_CP023597.1_3738358-3738375|NZ_CP023597.1_3739705-3739722	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023597.1_333144_333327_-,NA	NA|398aa|up_9|NZ_CP023597.1_323322_324516_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023597.1_324551_326234_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023597.1_326250_328446_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023597.1_328559_329693_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023597.1_329689_330310_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023597.1_330406_330988_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023597.1_330917_331643_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023597.1_331732_332653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023597.1_332692_333121_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023597.1_333144_333327_-	NA	NA|537aa|down_0|NZ_CP023597.1_339325_340936_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023597.1_340959_341868_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023597.1_342091_343987_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023597.1_343983_345600_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023597.1_345596_349589_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023597.1_349585_349894_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023597.1_349896_351438_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023597.1_351486_351780_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023597.1_351809_352100_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023597.1_352110_352998_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	2	366425-367123	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366713-366754|366788-366820	NZ_CP023597.1_374744-374785|NZ_CP023597.1_373559-373591	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023597.1_363437_363740_+,NA|161aa|down_1|NZ_CP023597.1_376533_377016_-,NA|410aa|down_5|NZ_CP023597.1_379132_380362_+	NA|262aa|up_9|NZ_CP023597.1_358132_358918_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023597.1_358906_359710_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023597.1_359719_361117_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023597.1_361295_363071_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023597.1_363213_363441_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023597.1_363437_363740_+	NA	NA|74aa|up_3|NZ_CP023597.1_363787_364009_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023597.1_364005_364431_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023597.1_364566_365199_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023597.1_365195_366104_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023597.1_375874_376546_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023597.1_376533_377016_-	NA	NA|239aa|down_2|NZ_CP023597.1_377073_377790_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023597.1_377891_378548_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023597.1_378617_379109_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023597.1_379132_380362_+	NA	NA|621aa|down_6|NZ_CP023597.1_380516_382379_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023597.1_382450_382837_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023597.1_382839_383502_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023597.1_383562_384447_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	3	691960-692036	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP023597.1_677855_678263_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP023597.1_678322_679009_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP023597.1_679162_681796_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP023597.1_681818_684206_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP023597.1_684343_685066_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP023597.1_685062_685860_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP023597.1_685861_686749_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP023597.1_686754_687969_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP023597.1_688992_690438_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP023597.1_690434_691871_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023597.1_693171_694722_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023597.1_694773_695166_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023597.1_695162_695420_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023597.1_695602_696838_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023597.1_697088_697502_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023597.1_697498_697735_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023597.1_697838_698345_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023597.1_698458_698929_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023597.1_698972_699734_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023597.1_699790_700102_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	4	926556-927503	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927339-927374|927339-927374|927339-927374	NZ_CP023597.1_675057-675022|NZ_CP023597.1_1213689-1213724|NZ_CP023597.1_2423733-2423698	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023597.1_931504_932056_-,NA|81aa|down_8|NZ_CP023597.1_937519_937762_+	NA|685aa|up_9|NZ_CP023597.1_914192_916247_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023597.1_916412_917582_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023597.1_917669_918686_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023597.1_918847_919489_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023597.1_919569_920625_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023597.1_920676_921069_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023597.1_921126_921549_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023597.1_921510_921801_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023597.1_921905_922811_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023597.1_922829_923645_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023597.1_927772_930412_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023597.1_930879_931524_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023597.1_931504_932056_-	NA	NA|218aa|down_3|NZ_CP023597.1_932205_932859_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023597.1_932929_933958_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023597.1_934646_935417_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023597.1_935503_936316_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023597.1_936383_937244_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023597.1_937519_937762_+	NA	NA|431aa|down_9|NZ_CP023597.1_938038_939331_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	5	1191256-1191364	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023597.1_1180623_1182255_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023597.1_1182330_1183395_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023597.1_1183447_1183921_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023597.1_1183954_1184818_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023597.1_1184822_1185680_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023597.1_1185680_1186763_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023597.1_1186843_1187263_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023597.1_1187374_1187941_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023597.1_1187937_1188333_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023597.1_1188360_1190364_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023597.1_1192449_1194213_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023597.1_1194209_1194983_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023597.1_1194994_1196032_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023597.1_1196218_1197055_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023597.1_1197170_1198022_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023597.1_1198095_1199313_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023597.1_1199365_1200310_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023597.1_1200532_1201600_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023597.1_1201656_1203051_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023597.1_1203252_1203975_+	pfam06271, RDD, RDD family
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	6	1211890-1212746	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	67	1212273-1212294|1212318-1212333|1212456-1212477|1212456-1212477|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591	NZ_CP023597.1_2960492-2960471|NZ_CP023597.1_2088583-2088568|NZ_CP023597.1_837369-837390|NZ_CP023597.1_1217584-1217605|NZ_CP023597.1_674721-674703|NZ_CP023597.1_1213416-1213434|NZ_CP023597.1_1217557-1217575|NZ_CP023597.1_1217629-1217647|NZ_CP023597.1_1630645-1630627|NZ_CP023597.1_1633472-1633454|NZ_CP023597.1_1990783-1990765|NZ_CP023597.1_2061511-2061493|NZ_CP023597.1_2061958-2061940|NZ_CP023597.1_2062057-2062039|NZ_CP023597.1_2802040-2802022|NZ_CP023597.1_2805568-2805550|NZ_CP023597.1_150165-150183|NZ_CP023597.1_333767-333749|NZ_CP023597.1_335186-335168|NZ_CP023597.1_335630-335612|NZ_CP023597.1_335681-335663|NZ_CP023597.1_335690-335672|NZ_CP023597.1_363015-362997|NZ_CP023597.1_443375-443357|NZ_CP023597.1_546719-546701|NZ_CP023597.1_623912-623930|NZ_CP023597.1_624134-624152|NZ_CP023597.1_673887-673869|NZ_CP023597.1_840152-840170|NZ_CP023597.1_1090918-1090936|NZ_CP023597.1_1091566-1091584|NZ_CP023597.1_1095625-1095607|NZ_CP023597.1_1212945-1212963|NZ_CP023597.1_1213335-1213353|NZ_CP023597.1_1217977-1217995|NZ_CP023597.1_1618610-1618592|NZ_CP023597.1_1619062-1619044|NZ_CP023597.1_1635985-1635967|NZ_CP023597.1_1635994-1635976|NZ_CP023597.1_1864274-1864256|NZ_CP023597.1_1864802-1864784|NZ_CP023597.1_1990057-1990039|NZ_CP023597.1_2001419-2001437|NZ_CP023597.1_2088781-2088763|NZ_CP023597.1_2303460-2303442|NZ_CP023597.1_2356906-2356888|NZ_CP023597.1_2419559-2419577|NZ_CP023597.1_2423646-2423628|NZ_CP023597.1_2569138-2569120|NZ_CP023597.1_2693433-2693451|NZ_CP023597.1_2795355-2795337|NZ_CP023597.1_2795937-2795919|NZ_CP023597.1_3054529-3054547|NZ_CP023597.1_3054628-3054646|NZ_CP023597.1_3705448-3705466|NZ_CP023597.1_3737426-3737408|NZ_CP023597.1_3738050-3738032|NZ_CP023597.1_3738245-3738227|NZ_CP023597.1_3738378-3738360|NZ_CP023597.1_3802241-3802259|NZ_CP023597.1_3802424-3802442|NZ_CP023597.1_3802592-3802610|NZ_CP023597.1_3930404-3930422|NZ_CP023597.1_3932134-3932152|NZ_CP023597.1_3940641-3940659|NZ_CP023597.1_4031589-4031571|NZ_CP023597.1_4094115-4094133	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023597.1_1207322_1207589_+,NA|61aa|down_3|NZ_CP023597.1_1215164_1215347_+,NA|35aa|down_4|NZ_CP023597.1_1215456_1215561_+	NA|465aa|up_9|NZ_CP023597.1_1201656_1203051_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023597.1_1203252_1203975_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023597.1_1204006_1205173_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023597.1_1205243_1205738_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023597.1_1205923_1206358_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023597.1_1206459_1207326_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023597.1_1207322_1207589_+	NA	NA|674aa|up_2|NZ_CP023597.1_1207575_1209597_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023597.1_1209695_1210424_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023597.1_1210534_1211323_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023597.1_1213979_1214300_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023597.1_1214452_1214887_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP023597.1_1214988_1215153_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023597.1_1215164_1215347_+	NA	NA|35aa|down_4|NZ_CP023597.1_1215456_1215561_+	NA	NA|152aa|down_5|NZ_CP023597.1_1215538_1215994_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023597.1_1216408_1218970_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023597.1_1219187_1220126_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023597.1_1220513_1221794_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023597.1_1221898_1222726_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	7	1489035-1489154	1	PILER-CR	no	DinG	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type IV-A	AACCCGCCGGTGCCGCCGGCACCGCCGGCG	30	1	1	1489065-1489083	NZ_CP023597.1_399561-399579	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|99aa|up_3|NZ_CP023597.1_1484925_1485222_+,NA	NA|166aa|up_9|NZ_CP023597.1_1477077_1477575_-	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|497aa|up_8|NZ_CP023597.1_1477571_1479062_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|542aa|up_7|NZ_CP023597.1_1479142_1480768_-	cd07302, CHD, cyclase homology domain	NA|536aa|up_6|NZ_CP023597.1_1480837_1482445_-	cd07302, CHD, cyclase homology domain	NA|568aa|up_5|NZ_CP023597.1_1482457_1484161_-	COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]	NA|224aa|up_4|NZ_CP023597.1_1484231_1484903_+	PRK03298, PRK03298, endonuclease NucS	NA|99aa|up_3|NZ_CP023597.1_1484925_1485222_+	NA	NA|153aa|up_2|NZ_CP023597.1_1485256_1485715_-	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	NA|394aa|up_1|NZ_CP023597.1_1485793_1486975_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|305aa|up_0|NZ_CP023597.1_1487104_1488019_+	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|732aa|down_0|NZ_CP023597.1_1490060_1492256_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|702aa|down_1|NZ_CP023597.1_1492263_1494369_-	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|864aa|down_2|NZ_CP023597.1_1494507_1497099_+	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase	DinG|665aa|down_3|NZ_CP023597.1_1497138_1499133_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|449aa|down_4|NZ_CP023597.1_1499156_1500503_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|102aa|down_5|NZ_CP023597.1_1500604_1500910_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|219aa|down_6|NZ_CP023597.1_1500869_1501526_+	pfam09438, DUF2017, Domain of unknown function (DUF2017)	NA|345aa|down_7|NZ_CP023597.1_1501542_1502577_+	COG3191, DmpA, L-aminopeptidase/D-esterase [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|147aa|down_8|NZ_CP023597.1_1502584_1503025_+	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)	NA|94aa|down_9|NZ_CP023597.1_1503046_1503328_+	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	8	1572129-1573201	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023597.1_1563892_1564210_+,NA	NA|103aa|up_9|NZ_CP023597.1_1561407_1561716_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023597.1_1561712_1563332_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023597.1_1563892_1564210_+	NA	NA|209aa|up_6|NZ_CP023597.1_1564344_1564971_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023597.1_1565036_1565369_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023597.1_1565384_1566641_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023597.1_1566768_1567980_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023597.1_1568052_1569531_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023597.1_1569527_1570913_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023597.1_1570990_1572025_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023597.1_1574054_1574456_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023597.1_1574452_1574710_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023597.1_1574792_1575752_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023597.1_1575776_1576739_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023597.1_1576872_1577475_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023597.1_1577555_1579523_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023597.1_1579540_1580365_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023597.1_1580533_1581016_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023597.1_1581087_1581912_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023597.1_1582108_1583047_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	9	1636563-1636789	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_7|NZ_CP023597.1_1623070_1623184_-,NA|137aa|up_6|NZ_CP023597.1_1623233_1623644_-,NA|288aa|down_2|NZ_CP023597.1_1640627_1641491_+	NA|767aa|up_9|NZ_CP023597.1_1619737_1622038_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|up_8|NZ_CP023597.1_1622153_1622639_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_7|NZ_CP023597.1_1623070_1623184_-	NA	NA|137aa|up_6|NZ_CP023597.1_1623233_1623644_-	NA	NA|248aa|up_5|NZ_CP023597.1_1623660_1624404_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_4|NZ_CP023597.1_1624400_1625312_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_3|NZ_CP023597.1_1625364_1626909_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_2|NZ_CP023597.1_1626905_1628027_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_1|NZ_CP023597.1_1628043_1630146_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|up_0|NZ_CP023597.1_1634976_1635903_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023597.1_1638328_1639594_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023597.1_1639621_1640608_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023597.1_1640627_1641491_+	NA	NA|311aa|down_3|NZ_CP023597.1_1641440_1642373_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023597.1_1642484_1643270_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023597.1_1643266_1644208_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023597.1_1644310_1646086_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023597.1_1646133_1646940_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023597.1_1646936_1649477_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023597.1_1649473_1650667_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	10	2088253-2088507	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088334-2088351|2088334-2088351|2088424-2088441	NZ_CP023597.1_401040-401023|NZ_CP023597.1_607367-607350|NZ_CP023597.1_3450143-3450126	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023597.1_2087612_2087876_-,NA	NA|165aa|up_9|NZ_CP023597.1_2073906_2074401_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023597.1_2074804_2075482_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023597.1_2075840_2078666_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023597.1_2078892_2079753_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023597.1_2079793_2080660_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023597.1_2080664_2082551_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023597.1_2082566_2084600_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023597.1_2084719_2086945_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023597.1_2087220_2087616_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023597.1_2087612_2087876_-	NA	NA|346aa|down_0|NZ_CP023597.1_2089644_2090682_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023597.1_2090681_2092049_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023597.1_2092222_2093659_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023597.1_2093694_2095146_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023597.1_2095175_2096126_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023597.1_2096140_2096557_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023597.1_2096834_2097257_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023597.1_2097305_2097608_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023597.1_2097604_2097919_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023597.1_2097918_2099652_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	11	2163346-2163450	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023597.1_2152393_2152864_-,NA|136aa|up_1|NZ_CP023597.1_2159889_2160297_-,NA|127aa|down_6|NZ_CP023597.1_2176519_2176900_-	NA|157aa|up_9|NZ_CP023597.1_2152393_2152864_-	NA	NA|216aa|up_8|NZ_CP023597.1_2153203_2153851_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023597.1_2153857_2156080_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023597.1_2156117_2156561_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023597.1_2156674_2157268_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023597.1_2157350_2157956_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023597.1_2158055_2159060_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023597.1_2159159_2159912_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023597.1_2159889_2160297_-	NA	NA|767aa|up_0|NZ_CP023597.1_2160431_2162732_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023597.1_2167618_2170582_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023597.1_2171030_2171495_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023597.1_2171592_2172456_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023597.1_2172493_2173765_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023597.1_2174036_2175152_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023597.1_2175142_2176483_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023597.1_2176519_2176900_-	NA	NA|621aa|down_7|NZ_CP023597.1_2177056_2178919_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023597.1_2178926_2179406_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023597.1_2179642_2180416_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	12	2168784-2169003	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023597.1_2159889_2160297_-,NA|127aa|down_5|NZ_CP023597.1_2176519_2176900_-	NA|216aa|up_9|NZ_CP023597.1_2153203_2153851_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023597.1_2153857_2156080_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023597.1_2156117_2156561_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023597.1_2156674_2157268_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023597.1_2157350_2157956_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023597.1_2158055_2159060_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023597.1_2159159_2159912_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023597.1_2159889_2160297_-	NA	NA|767aa|up_1|NZ_CP023597.1_2160431_2162732_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023597.1_2162901_2167281_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023597.1_2171030_2171495_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023597.1_2171592_2172456_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023597.1_2172493_2173765_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023597.1_2174036_2175152_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023597.1_2175142_2176483_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023597.1_2176519_2176900_-	NA	NA|621aa|down_6|NZ_CP023597.1_2177056_2178919_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023597.1_2178926_2179406_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023597.1_2179642_2180416_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP023597.1_2181209_2181854_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	13	3119120-3120474	3,8,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-A,Type III-C,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023597.1_3112399_3112654_-,NA|135aa|up_7|NZ_CP023597.1_3112801_3113206_+,NA|64aa|up_6|NZ_CP023597.1_3113202_3113394_+,NA|86aa|up_4|NZ_CP023597.1_3114980_3115238_+,NA|104aa|up_3|NZ_CP023597.1_3115342_3115654_+,NA|203aa|up_2|NZ_CP023597.1_3116073_3116682_+,NA	NA|92aa|up_9|NZ_CP023597.1_3111948_3112224_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023597.1_3112399_3112654_-	NA	NA|135aa|up_7|NZ_CP023597.1_3112801_3113206_+	NA	NA|64aa|up_6|NZ_CP023597.1_3113202_3113394_+	NA	NA|385aa|up_5|NZ_CP023597.1_3113592_3114747_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023597.1_3114980_3115238_+	NA	NA|104aa|up_3|NZ_CP023597.1_3115342_3115654_+	NA	NA|203aa|up_2|NZ_CP023597.1_3116073_3116682_+	NA	NA|470aa|up_1|NZ_CP023597.1_3116752_3118162_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023597.1_3118158_3118971_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023597.1_3120500_3121762_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023597.1_3123559_3123901_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023597.1_3123901_3124918_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023597.1_3124930_3126079_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023597.1_3126174_3127302_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023597.1_3127298_3128207_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023597.1_3128187_3128898_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023597.1_3128907_3129282_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023597.1_3129278_3131717_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023597.1_3131713_3132436_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	14	3121797-3123511	9,5,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-A,Type III-C,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023597.1_3112399_3112654_-,NA|135aa|up_8|NZ_CP023597.1_3112801_3113206_+,NA|64aa|up_7|NZ_CP023597.1_3113202_3113394_+,NA|86aa|up_5|NZ_CP023597.1_3114980_3115238_+,NA|104aa|up_4|NZ_CP023597.1_3115342_3115654_+,NA|203aa|up_3|NZ_CP023597.1_3116073_3116682_+,NA	NA|85aa|up_9|NZ_CP023597.1_3112399_3112654_-	NA	NA|135aa|up_8|NZ_CP023597.1_3112801_3113206_+	NA	NA|64aa|up_7|NZ_CP023597.1_3113202_3113394_+	NA	NA|385aa|up_6|NZ_CP023597.1_3113592_3114747_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023597.1_3114980_3115238_+	NA	NA|104aa|up_4|NZ_CP023597.1_3115342_3115654_+	NA	NA|203aa|up_3|NZ_CP023597.1_3116073_3116682_+	NA	NA|470aa|up_2|NZ_CP023597.1_3116752_3118162_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023597.1_3118158_3118971_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023597.1_3120500_3121762_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023597.1_3123559_3123901_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023597.1_3123901_3124918_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023597.1_3124930_3126079_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023597.1_3126174_3127302_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023597.1_3127298_3128207_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023597.1_3128187_3128898_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023597.1_3128907_3129282_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023597.1_3129278_3131717_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023597.1_3131713_3132436_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023597.1_3132835_3133381_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	15	3740572-3741113	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023597.1_3755214_3755502_-,NA|87aa|down_9|NZ_CP023597.1_3768622_3768883_-	NA|282aa|up_9|NZ_CP023597.1_3719871_3720717_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023597.1_3721191_3721632_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023597.1_3721665_3722535_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023597.1_3722555_3723566_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023597.1_3723850_3724483_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023597.1_3724549_3725779_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023597.1_3726061_3727411_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023597.1_3727422_3728562_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023597.1_3728558_3729290_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023597.1_3729298_3736870_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023597.1_3743084_3743342_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023597.1_3743597_3753071_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023597.1_3753696_3754143_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023597.1_3754179_3754920_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023597.1_3755214_3755502_-	NA	NA|3717aa|down_5|NZ_CP023597.1_3755838_3766989_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023597.1_3767232_3768027_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023597.1_3768108_3768480_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023597.1_3768377_3768596_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023597.1_3768622_3768883_-	NA
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	16	3948219-3949970	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948810-3948845|3948810-3948845|3948810-3948845|3948810-3948845|3948810-3948845|3949701-3949727|3949701-3949727|3949701-3949727|3949701-3949727	NZ_CP023597.1_3946926-3946961|NZ_CP023597.1_3947268-3947303|NZ_CP023597.1_3947859-3947894|NZ_CP023597.1_3948210-3948245|NZ_CP023597.1_3932689-3932724|NZ_CP023597.1_361955-361981|NZ_CP023597.1_3941142-3941168|NZ_CP023597.1_3941478-3941504|NZ_CP023597.1_3941823-3941849	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023597.1_3953285_3954125_+	NA|318aa|up_9|NZ_CP023597.1_3920971_3921925_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023597.1_3921949_3922141_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023597.1_3922355_3923558_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023597.1_3923582_3924704_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023597.1_3924774_3926283_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_4|NZ_CP023597.1_3926453_3930599_+	pfam00934, PE, PE family	NA|1902aa|up_3|NZ_CP023597.1_3930889_3936595_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023597.1_3936761_3938309_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023597.1_3938305_3939142_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023597.1_3944937_3945594_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023597.1_3950678_3952325_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023597.1_3952398_3953190_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023597.1_3953285_3954125_+	NA	NA|399aa|down_3|NZ_CP023597.1_3954179_3955376_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023597.1_3955404_3956115_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023597.1_3956179_3957223_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023597.1_3957375_3958287_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023597.1_3958302_3959367_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_8|NZ_CP023597.1_3960609_3961641_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NZ_CP023597.1_3961654_3962179_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_002447355.1_ASM244735v1	NZ_CP023597	Mycobacterium tuberculosis strain SLM088 chromosome, complete genome	17	4110532-4110620	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023597.1_4101118_4101889_-,NA|119aa|up_3|NZ_CP023597.1_4107023_4107380_+,NA|52aa|up_2|NZ_CP023597.1_4107479_4107635_+,NA|233aa|up_0|NZ_CP023597.1_4109636_4110335_-,NA|126aa|down_6|NZ_CP023597.1_4115855_4116233_+	NA|288aa|up_9|NZ_CP023597.1_4099500_4100364_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023597.1_4101118_4101889_-	NA	NA|549aa|up_7|NZ_CP023597.1_4101885_4103532_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023597.1_4103528_4104392_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023597.1_4104384_4105311_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023597.1_4105312_4106938_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023597.1_4107023_4107380_+	NA	NA|52aa|up_2|NZ_CP023597.1_4107479_4107635_+	NA	NA|652aa|up_1|NZ_CP023597.1_4107645_4109601_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023597.1_4109636_4110335_-	NA	NA|173aa|down_0|NZ_CP023597.1_4110680_4111199_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023597.1_4111199_4112183_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023597.1_4112175_4113369_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023597.1_4113374_4114196_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023597.1_4114327_4115011_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023597.1_4115010_4115748_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023597.1_4115855_4116233_+	NA	NA|225aa|down_7|NZ_CP023597.1_4116331_4117006_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023597.1_4117109_4117904_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023597.1_4117910_4118366_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
