assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	1	333648-334446	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023600.1_333163_333346_-,NA	NA|170aa|up_9|NZ_CP023600.1_322768_323278_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|398aa|up_8|NZ_CP023600.1_323342_324536_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_7|NZ_CP023600.1_324571_326254_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|378aa|up_6|NZ_CP023600.1_328578_329712_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023600.1_329708_330329_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023600.1_330425_331007_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023600.1_330936_331662_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023600.1_331751_332672_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023600.1_332711_333140_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023600.1_333163_333346_-	NA	NA|835aa|down_0|NZ_CP023600.1_336563_339068_-	pfam00934, PE, PE family	NA|536aa|down_1|NZ_CP023600.1_339358_340966_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023600.1_340989_341898_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023600.1_342121_344017_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023600.1_344013_345630_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023600.1_345626_349619_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023600.1_349615_349924_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023600.1_349926_351468_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023600.1_351516_351810_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023600.1_351839_352130_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	2	366455-367153	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366743-366784|366818-366850	NZ_CP023600.1_374774-374815|NZ_CP023600.1_373589-373621	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023600.1_363467_363770_+,NA|161aa|down_1|NZ_CP023600.1_376563_377046_-,NA|410aa|down_5|NZ_CP023600.1_379162_380392_+	NA|262aa|up_9|NZ_CP023600.1_358162_358948_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023600.1_358936_359740_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023600.1_359749_361147_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023600.1_361325_363101_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023600.1_363243_363471_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023600.1_363467_363770_+	NA	NA|74aa|up_3|NZ_CP023600.1_363817_364039_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023600.1_364035_364461_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023600.1_364596_365229_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023600.1_365225_366134_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023600.1_375904_376576_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023600.1_376563_377046_-	NA	NA|239aa|down_2|NZ_CP023600.1_377103_377820_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023600.1_377921_378578_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023600.1_378647_379139_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023600.1_379162_380392_+	NA	NA|621aa|down_6|NZ_CP023600.1_380546_382409_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023600.1_382480_382867_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023600.1_382869_383532_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023600.1_383592_384477_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	3	691963-692039	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023600.1_677647_677863_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023600.1_677859_678267_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023600.1_678326_679013_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023600.1_679166_681800_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023600.1_681822_684210_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023600.1_684347_685070_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023600.1_685066_685864_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP023600.1_685865_686753_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023600.1_686758_687973_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023600.1_688996_690442_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023600.1_693174_694725_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023600.1_694776_695169_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023600.1_695165_695423_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023600.1_695605_696841_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023600.1_697091_697505_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023600.1_697501_697738_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023600.1_697841_698348_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023600.1_698461_698932_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023600.1_698975_699737_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023600.1_699793_700105_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	4	926540-927487	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927323-927358|927323-927358|927323-927358	NZ_CP023600.1_675066-675031|NZ_CP023600.1_1213681-1213716|NZ_CP023600.1_2423721-2423686	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023600.1_931497_932049_-,NA|81aa|down_8|NZ_CP023600.1_937512_937755_+	NA|685aa|up_9|NZ_CP023600.1_914194_916249_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023600.1_916414_917584_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023600.1_917653_918670_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023600.1_918831_919473_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023600.1_919553_920609_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023600.1_920660_921053_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023600.1_921110_921533_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023600.1_921494_921785_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023600.1_921889_922795_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023600.1_922813_923629_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP023600.1_927756_930405_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023600.1_930872_931517_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023600.1_931497_932049_-	NA	NA|218aa|down_3|NZ_CP023600.1_932198_932852_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023600.1_932922_933951_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023600.1_934639_935410_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023600.1_935496_936309_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023600.1_936376_937237_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023600.1_937512_937755_+	NA	NA|431aa|down_9|NZ_CP023600.1_938031_939324_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	5	1191248-1191356	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023600.1_1180615_1182247_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023600.1_1182322_1183387_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023600.1_1183439_1183913_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023600.1_1183946_1184810_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023600.1_1184814_1185672_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023600.1_1185672_1186755_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023600.1_1186835_1187255_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023600.1_1187366_1187933_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023600.1_1187929_1188325_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023600.1_1188352_1190356_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023600.1_1192441_1194205_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023600.1_1194201_1194975_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023600.1_1194986_1196024_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023600.1_1196210_1197047_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023600.1_1197162_1198014_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023600.1_1198087_1199305_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023600.1_1199357_1200302_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023600.1_1200524_1201592_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023600.1_1201648_1203043_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023600.1_1203244_1203967_+	pfam06271, RDD, RDD family
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	6	1211882-1212738	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	74	1212265-1212286|1212310-1212325|1212448-1212469|1212448-1212469|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583|1212565-1212583	NZ_CP023600.1_2960460-2960439|NZ_CP023600.1_2088559-2088544|NZ_CP023600.1_837371-837392|NZ_CP023600.1_1217576-1217597|NZ_CP023600.1_674730-674712|NZ_CP023600.1_1213408-1213426|NZ_CP023600.1_1217549-1217567|NZ_CP023600.1_1217621-1217639|NZ_CP023600.1_1630631-1630613|NZ_CP023600.1_1633457-1633439|NZ_CP023600.1_1990763-1990745|NZ_CP023600.1_2061487-2061469|NZ_CP023600.1_2061934-2061916|NZ_CP023600.1_2062033-2062015|NZ_CP023600.1_2802035-2802017|NZ_CP023600.1_2805563-2805545|NZ_CP023600.1_1636852-1636834|NZ_CP023600.1_150187-150205|NZ_CP023600.1_335205-335187|NZ_CP023600.1_335658-335640|NZ_CP023600.1_335709-335691|NZ_CP023600.1_335718-335700|NZ_CP023600.1_337998-337980|NZ_CP023600.1_338127-338109|NZ_CP023600.1_338394-338376|NZ_CP023600.1_338423-338441|NZ_CP023600.1_338517-338499|NZ_CP023600.1_363045-363027|NZ_CP023600.1_443387-443369|NZ_CP023600.1_546731-546713|NZ_CP023600.1_623921-623939|NZ_CP023600.1_624143-624161|NZ_CP023600.1_673896-673878|NZ_CP023600.1_840154-840172|NZ_CP023600.1_1090911-1090929|NZ_CP023600.1_1091559-1091577|NZ_CP023600.1_1095617-1095599|NZ_CP023600.1_1212937-1212955|NZ_CP023600.1_1213327-1213345|NZ_CP023600.1_1217969-1217987|NZ_CP023600.1_1489145-1489127|NZ_CP023600.1_1618595-1618577|NZ_CP023600.1_1619048-1619030|NZ_CP023600.1_1635970-1635952|NZ_CP023600.1_1635979-1635961|NZ_CP023600.1_1864248-1864230|NZ_CP023600.1_1864776-1864758|NZ_CP023600.1_1990037-1990019|NZ_CP023600.1_2001399-2001417|NZ_CP023600.1_2088757-2088739|NZ_CP023600.1_2303441-2303423|NZ_CP023600.1_2356893-2356875|NZ_CP023600.1_2419548-2419566|NZ_CP023600.1_2423634-2423616|NZ_CP023600.1_2569128-2569110|NZ_CP023600.1_2693426-2693444|NZ_CP023600.1_2795350-2795332|NZ_CP023600.1_2795932-2795914|NZ_CP023600.1_3054499-3054517|NZ_CP023600.1_3054598-3054616|NZ_CP023600.1_3705404-3705422|NZ_CP023600.1_3737381-3737363|NZ_CP023600.1_3738005-3737987|NZ_CP023600.1_3738248-3738230|NZ_CP023600.1_3738381-3738363|NZ_CP023600.1_3802244-3802262|NZ_CP023600.1_3802427-3802445|NZ_CP023600.1_3802595-3802613|NZ_CP023600.1_3930415-3930433|NZ_CP023600.1_3932154-3932172|NZ_CP023600.1_3940661-3940679|NZ_CP023600.1_3948656-3948674|NZ_CP023600.1_4031639-4031621|NZ_CP023600.1_4094165-4094183	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023600.1_1207314_1207581_+,NA|61aa|down_3|NZ_CP023600.1_1215156_1215339_+,NA|35aa|down_4|NZ_CP023600.1_1215448_1215553_+	NA|465aa|up_9|NZ_CP023600.1_1201648_1203043_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023600.1_1203244_1203967_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023600.1_1203998_1205165_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023600.1_1205235_1205730_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023600.1_1205915_1206350_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023600.1_1206451_1207318_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023600.1_1207314_1207581_+	NA	NA|674aa|up_2|NZ_CP023600.1_1207567_1209589_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023600.1_1209687_1210416_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023600.1_1210526_1211315_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023600.1_1213971_1214292_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023600.1_1214444_1214879_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP023600.1_1214977_1215145_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023600.1_1215156_1215339_+	NA	NA|35aa|down_4|NZ_CP023600.1_1215448_1215553_+	NA	NA|152aa|down_5|NZ_CP023600.1_1215530_1215986_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023600.1_1216400_1218962_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023600.1_1219179_1220118_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023600.1_1220505_1221786_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023600.1_1221890_1222718_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	7	1572118-1573190	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023600.1_1563881_1564199_+,NA	NA|103aa|up_9|NZ_CP023600.1_1561396_1561705_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023600.1_1561701_1563321_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023600.1_1563881_1564199_+	NA	NA|209aa|up_6|NZ_CP023600.1_1564333_1564960_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023600.1_1565025_1565358_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023600.1_1565373_1566630_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023600.1_1566757_1567969_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023600.1_1568041_1569520_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023600.1_1569516_1570902_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023600.1_1570979_1572014_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023600.1_1574044_1574446_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023600.1_1574442_1574700_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023600.1_1574782_1575742_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023600.1_1575766_1576729_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023600.1_1576862_1577465_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023600.1_1577545_1579513_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023600.1_1579530_1580355_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023600.1_1580523_1581006_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023600.1_1581077_1581902_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023600.1_1582098_1583037_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	8	2088229-2088483	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088310-2088327|2088310-2088327|2088400-2088417	NZ_CP023600.1_401070-401053|NZ_CP023600.1_607376-607359|NZ_CP023600.1_3450106-3450089	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023600.1_2087588_2087852_-,NA	NA|165aa|up_9|NZ_CP023600.1_2073882_2074377_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023600.1_2074780_2075458_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023600.1_2075816_2078642_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023600.1_2078868_2079729_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023600.1_2079769_2080636_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023600.1_2080640_2082527_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023600.1_2082542_2084576_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023600.1_2084695_2086921_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023600.1_2087196_2087592_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023600.1_2087588_2087852_-	NA	NA|346aa|down_0|NZ_CP023600.1_2089620_2090658_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023600.1_2090657_2092025_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023600.1_2092198_2093635_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|486aa|down_3|NZ_CP023600.1_2093670_2095128_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023600.1_2095157_2096108_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023600.1_2096122_2096539_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023600.1_2096816_2097239_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023600.1_2097287_2097590_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023600.1_2097586_2097901_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023600.1_2097900_2099634_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	9	2168755-2168974	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP023600.1_2159861_2160269_-,NA|127aa|down_5|NZ_CP023600.1_2176490_2176871_-	NA|741aa|up_9|NZ_CP023600.1_2153829_2156052_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP023600.1_2156089_2156533_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP023600.1_2156646_2157240_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP023600.1_2157322_2157928_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP023600.1_2158027_2159032_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP023600.1_2159131_2159884_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP023600.1_2159861_2160269_-	NA	NA|368aa|up_2|NZ_CP023600.1_2160403_2161507_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP023600.1_2161506_2162703_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP023600.1_2162872_2167252_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023600.1_2171001_2171466_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023600.1_2171563_2172427_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023600.1_2172464_2173736_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023600.1_2174007_2175123_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023600.1_2175113_2176454_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023600.1_2176490_2176871_-	NA	NA|621aa|down_6|NZ_CP023600.1_2177027_2178890_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023600.1_2178897_2179377_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023600.1_2179613_2180387_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023600.1_2180390_2181158_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	10	3119090-3120444	1,7,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-C,Type III-D,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023600.1_3112369_3112624_-,NA|135aa|up_7|NZ_CP023600.1_3112771_3113176_+,NA|64aa|up_6|NZ_CP023600.1_3113172_3113364_+,NA|86aa|up_4|NZ_CP023600.1_3114950_3115208_+,NA|104aa|up_3|NZ_CP023600.1_3115312_3115624_+,NA|203aa|up_2|NZ_CP023600.1_3116043_3116652_+,NA	NA|92aa|up_9|NZ_CP023600.1_3111918_3112194_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023600.1_3112369_3112624_-	NA	NA|135aa|up_7|NZ_CP023600.1_3112771_3113176_+	NA	NA|64aa|up_6|NZ_CP023600.1_3113172_3113364_+	NA	NA|385aa|up_5|NZ_CP023600.1_3113562_3114717_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023600.1_3114950_3115208_+	NA	NA|104aa|up_3|NZ_CP023600.1_3115312_3115624_+	NA	NA|203aa|up_2|NZ_CP023600.1_3116043_3116652_+	NA	NA|470aa|up_1|NZ_CP023600.1_3116722_3118132_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023600.1_3118128_3118941_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023600.1_3120470_3121732_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023600.1_3123529_3123871_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023600.1_3123871_3124888_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023600.1_3124900_3126049_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023600.1_3126144_3127272_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023600.1_3127268_3128177_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023600.1_3128157_3128868_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023600.1_3128877_3129252_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_8|NZ_CP023600.1_3129248_3131678_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023600.1_3131674_3132397_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	11	3121767-3123481	8,5,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-C,Type III-D,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023600.1_3112369_3112624_-,NA|135aa|up_8|NZ_CP023600.1_3112771_3113176_+,NA|64aa|up_7|NZ_CP023600.1_3113172_3113364_+,NA|86aa|up_5|NZ_CP023600.1_3114950_3115208_+,NA|104aa|up_4|NZ_CP023600.1_3115312_3115624_+,NA|203aa|up_3|NZ_CP023600.1_3116043_3116652_+,NA	NA|85aa|up_9|NZ_CP023600.1_3112369_3112624_-	NA	NA|135aa|up_8|NZ_CP023600.1_3112771_3113176_+	NA	NA|64aa|up_7|NZ_CP023600.1_3113172_3113364_+	NA	NA|385aa|up_6|NZ_CP023600.1_3113562_3114717_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023600.1_3114950_3115208_+	NA	NA|104aa|up_4|NZ_CP023600.1_3115312_3115624_+	NA	NA|203aa|up_3|NZ_CP023600.1_3116043_3116652_+	NA	NA|470aa|up_2|NZ_CP023600.1_3116722_3118132_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023600.1_3118128_3118941_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023600.1_3120470_3121732_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023600.1_3123529_3123871_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023600.1_3123871_3124888_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023600.1_3124900_3126049_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023600.1_3126144_3127272_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023600.1_3127268_3128177_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023600.1_3128157_3128868_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023600.1_3128877_3129252_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_7|NZ_CP023600.1_3129248_3131678_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023600.1_3131674_3132397_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023600.1_3132796_3133342_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	12	3740575-3741116	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023600.1_3755217_3755505_-,NA|87aa|down_9|NZ_CP023600.1_3768625_3768886_-	NA|282aa|up_9|NZ_CP023600.1_3719826_3720672_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023600.1_3721146_3721587_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023600.1_3721620_3722490_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023600.1_3722510_3723521_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023600.1_3723805_3724438_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023600.1_3724504_3725734_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023600.1_3726016_3727366_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023600.1_3727377_3728517_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023600.1_3728513_3729245_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023600.1_3729253_3736825_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023600.1_3743087_3743345_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023600.1_3743600_3753074_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023600.1_3753699_3754146_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023600.1_3754182_3754923_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023600.1_3755217_3755505_-	NA	NA|3717aa|down_5|NZ_CP023600.1_3755841_3766992_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023600.1_3767235_3768030_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023600.1_3768111_3768483_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023600.1_3768380_3768599_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023600.1_3768625_3768886_-	NA
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	13	3762373-3762499	3	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_0|NZ_CP023600.1_3755217_3755505_-,NA|87aa|down_3|NZ_CP023600.1_3768625_3768886_-	NA|410aa|up_9|NZ_CP023600.1_3724504_3725734_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_8|NZ_CP023600.1_3726016_3727366_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_7|NZ_CP023600.1_3727377_3728517_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_6|NZ_CP023600.1_3728513_3729245_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_5|NZ_CP023600.1_3729253_3736825_-	pfam00823, PPE, PPE family	NA|86aa|up_4|NZ_CP023600.1_3743087_3743345_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|up_3|NZ_CP023600.1_3743600_3753074_-	pfam00823, PPE, PPE family	NA|149aa|up_2|NZ_CP023600.1_3753699_3754146_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|up_1|NZ_CP023600.1_3754182_3754923_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_0|NZ_CP023600.1_3755217_3755505_-	NA	NA|265aa|down_0|NZ_CP023600.1_3767235_3768030_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_1|NZ_CP023600.1_3768111_3768483_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_2|NZ_CP023600.1_3768380_3768599_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_3|NZ_CP023600.1_3768625_3768886_-	NA	NA|130aa|down_4|NZ_CP023600.1_3769000_3769390_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_5|NZ_CP023600.1_3769403_3769697_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_6|NZ_CP023600.1_3769693_3770539_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_7|NZ_CP023600.1_3770662_3770938_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_8|NZ_CP023600.1_3770934_3771192_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_9|NZ_CP023600.1_3771233_3772424_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain
GCF_002447415.1_ASM244741v1	NZ_CP023600	Mycobacterium tuberculosis strain CSV3611 chromosome, complete genome	14	4110582-4110670	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023600.1_4101168_4101939_-,NA|119aa|up_3|NZ_CP023600.1_4107073_4107430_+,NA|52aa|up_2|NZ_CP023600.1_4107529_4107685_+,NA|233aa|up_0|NZ_CP023600.1_4109686_4110385_-,NA|126aa|down_6|NZ_CP023600.1_4115905_4116283_+	NA|288aa|up_9|NZ_CP023600.1_4099550_4100414_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023600.1_4101168_4101939_-	NA	NA|549aa|up_7|NZ_CP023600.1_4101935_4103582_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023600.1_4103578_4104442_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023600.1_4104434_4105361_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023600.1_4105362_4106988_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023600.1_4107073_4107430_+	NA	NA|52aa|up_2|NZ_CP023600.1_4107529_4107685_+	NA	NA|652aa|up_1|NZ_CP023600.1_4107695_4109651_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023600.1_4109686_4110385_-	NA	NA|173aa|down_0|NZ_CP023600.1_4110730_4111249_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023600.1_4111249_4112233_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023600.1_4112225_4113419_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023600.1_4113424_4114246_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023600.1_4114377_4115061_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023600.1_4115060_4115798_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023600.1_4115905_4116283_+	NA	NA|225aa|down_7|NZ_CP023600.1_4116381_4117056_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023600.1_4117161_4117956_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023600.1_4117962_4118418_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
