assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	1	334325-334661	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCCGCCGGCCCCGCCG	16	0	0	NA	NA	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023605.1_333144_333327_-,NA	NA|398aa|up_9|NZ_CP023605.1_323322_324516_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023605.1_324551_326234_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023605.1_326250_328446_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023605.1_328559_329693_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023605.1_329689_330310_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023605.1_330406_330988_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023605.1_330917_331643_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023605.1_331732_332653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023605.1_332692_333121_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023605.1_333144_333327_-	NA	NA|838aa|down_0|NZ_CP023605.1_336544_339058_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023605.1_339348_340959_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023605.1_340982_341891_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023605.1_342114_344010_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023605.1_344006_345623_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023605.1_345619_349612_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023605.1_349608_349917_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023605.1_349919_351461_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023605.1_351509_351803_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023605.1_351832_352123_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	2	335370-335942	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	3	3	335790-335813|335835-335867|335889-335921	NZ_CP023605.1_338571-338594|NZ_CP023605.1_338598-338630|NZ_CP023605.1_338652-338684	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023605.1_333144_333327_-,NA	NA|398aa|up_9|NZ_CP023605.1_323322_324516_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023605.1_324551_326234_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023605.1_326250_328446_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023605.1_328559_329693_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023605.1_329689_330310_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023605.1_330406_330988_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023605.1_330917_331643_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023605.1_331732_332653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023605.1_332692_333121_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023605.1_333144_333327_-	NA	NA|838aa|down_0|NZ_CP023605.1_336544_339058_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023605.1_339348_340959_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023605.1_340982_341891_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023605.1_342114_344010_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023605.1_344006_345623_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023605.1_345619_349612_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023605.1_349608_349917_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023605.1_349919_351461_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023605.1_351509_351803_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023605.1_351832_352123_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	3	338089-338311	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP023605.1_333144_333327_-,NA	NA|561aa|up_9|NZ_CP023605.1_324551_326234_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP023605.1_326250_328446_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP023605.1_328559_329693_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP023605.1_329689_330310_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP023605.1_330406_330988_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP023605.1_330917_331643_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP023605.1_331732_332653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP023605.1_332692_333121_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP023605.1_333144_333327_-	NA	NA|958aa|up_0|NZ_CP023605.1_333421_336295_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP023605.1_339348_340959_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023605.1_340982_341891_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023605.1_342114_344010_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023605.1_344006_345623_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023605.1_345619_349612_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023605.1_349608_349917_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023605.1_349919_351461_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023605.1_351509_351803_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023605.1_351832_352123_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023605.1_352133_353021_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	4	366448-367146	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366736-366777|366811-366843	NZ_CP023605.1_374767-374808|NZ_CP023605.1_373582-373614	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023605.1_363460_363763_+,NA|161aa|down_1|NZ_CP023605.1_376556_377039_-,NA|410aa|down_5|NZ_CP023605.1_379155_380385_+	NA|262aa|up_9|NZ_CP023605.1_358155_358941_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023605.1_358929_359733_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023605.1_359742_361140_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023605.1_361318_363094_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023605.1_363236_363464_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023605.1_363460_363763_+	NA	NA|74aa|up_3|NZ_CP023605.1_363810_364032_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023605.1_364028_364454_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023605.1_364589_365222_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023605.1_365218_366127_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023605.1_375897_376569_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023605.1_376556_377039_-	NA	NA|239aa|down_2|NZ_CP023605.1_377096_377813_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023605.1_377914_378571_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023605.1_378640_379132_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023605.1_379155_380385_+	NA	NA|621aa|down_6|NZ_CP023605.1_380539_382402_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023605.1_382473_382860_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023605.1_382862_383525_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023605.1_383585_384470_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	5	691983-692059	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP023605.1_677878_678286_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP023605.1_678345_679032_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP023605.1_679185_681819_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP023605.1_681841_684229_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP023605.1_684366_685089_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP023605.1_685085_685883_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP023605.1_685884_686772_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP023605.1_686777_687992_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP023605.1_689015_690461_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP023605.1_690457_691894_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023605.1_693194_694745_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023605.1_694796_695189_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023605.1_695185_695443_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023605.1_695625_696861_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023605.1_697111_697525_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023605.1_697521_697758_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023605.1_697861_698368_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023605.1_698481_698952_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023605.1_698995_699757_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023605.1_699813_700125_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	6	926579-927526	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGNGCCGGCGGNNCCGGCGG	21	1	3	927362-927397|927362-927397|927362-927397	NZ_CP023605.1_675080-675045|NZ_CP023605.1_1213712-1213747|NZ_CP023605.1_2423752-2423717	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023605.1_931527_932079_-,NA|81aa|down_8|NZ_CP023605.1_937542_937785_+	NA|685aa|up_9|NZ_CP023605.1_914215_916270_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023605.1_916435_917605_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023605.1_917692_918709_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023605.1_918870_919512_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023605.1_919592_920648_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023605.1_920699_921092_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023605.1_921149_921572_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023605.1_921533_921824_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023605.1_921928_922834_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023605.1_922852_923668_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023605.1_927795_930435_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023605.1_930902_931547_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023605.1_931527_932079_-	NA	NA|218aa|down_3|NZ_CP023605.1_932228_932882_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023605.1_932952_933981_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023605.1_934669_935440_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023605.1_935526_936339_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023605.1_936406_937267_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023605.1_937542_937785_+	NA	NA|431aa|down_9|NZ_CP023605.1_938061_939354_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	7	1191279-1191387	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023605.1_1180646_1182278_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023605.1_1182353_1183418_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023605.1_1183470_1183944_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023605.1_1183977_1184841_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023605.1_1184845_1185703_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023605.1_1185703_1186786_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023605.1_1186866_1187286_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023605.1_1187397_1187964_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023605.1_1187960_1188356_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023605.1_1188383_1190387_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023605.1_1192472_1194236_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023605.1_1194232_1195006_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023605.1_1195017_1196055_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023605.1_1196241_1197078_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023605.1_1197193_1198045_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023605.1_1198118_1199336_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023605.1_1199388_1200333_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023605.1_1200555_1201623_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023605.1_1201679_1203074_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023605.1_1203275_1203998_+	pfam06271, RDD, RDD family
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	8	1211913-1212769	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	70	1212296-1212317|1212341-1212356|1212479-1212500|1212479-1212500|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614|1212596-1212614	NZ_CP023605.1_2960510-2960489|NZ_CP023605.1_2088599-2088584|NZ_CP023605.1_837392-837413|NZ_CP023605.1_1217607-1217628|NZ_CP023605.1_674744-674726|NZ_CP023605.1_840454-840472|NZ_CP023605.1_1213439-1213457|NZ_CP023605.1_1217580-1217598|NZ_CP023605.1_1217652-1217670|NZ_CP023605.1_1630670-1630652|NZ_CP023605.1_1633497-1633479|NZ_CP023605.1_1990808-1990790|NZ_CP023605.1_2061527-2061509|NZ_CP023605.1_2061974-2061956|NZ_CP023605.1_2062073-2062055|NZ_CP023605.1_2802059-2802041|NZ_CP023605.1_2805587-2805569|NZ_CP023605.1_150165-150183|NZ_CP023605.1_333767-333749|NZ_CP023605.1_335186-335168|NZ_CP023605.1_337988-337970|NZ_CP023605.1_338384-338366|NZ_CP023605.1_338413-338431|NZ_CP023605.1_338507-338489|NZ_CP023605.1_363038-363020|NZ_CP023605.1_443398-443380|NZ_CP023605.1_546742-546724|NZ_CP023605.1_623935-623953|NZ_CP023605.1_624157-624175|NZ_CP023605.1_673910-673892|NZ_CP023605.1_840175-840193|NZ_CP023605.1_1090941-1090959|NZ_CP023605.1_1091589-1091607|NZ_CP023605.1_1095648-1095630|NZ_CP023605.1_1212968-1212986|NZ_CP023605.1_1213358-1213376|NZ_CP023605.1_1218000-1218018|NZ_CP023605.1_1489177-1489159|NZ_CP023605.1_1618634-1618616|NZ_CP023605.1_1619087-1619069|NZ_CP023605.1_1636010-1635992|NZ_CP023605.1_1636019-1636001|NZ_CP023605.1_1864299-1864281|NZ_CP023605.1_1864827-1864809|NZ_CP023605.1_1990082-1990064|NZ_CP023605.1_2001444-2001462|NZ_CP023605.1_2088797-2088779|NZ_CP023605.1_2303476-2303458|NZ_CP023605.1_2356922-2356904|NZ_CP023605.1_2419578-2419596|NZ_CP023605.1_2423665-2423647|NZ_CP023605.1_2569157-2569139|NZ_CP023605.1_2693452-2693470|NZ_CP023605.1_2795374-2795356|NZ_CP023605.1_2795956-2795938|NZ_CP023605.1_3054547-3054565|NZ_CP023605.1_3054646-3054664|NZ_CP023605.1_3705460-3705478|NZ_CP023605.1_3737438-3737420|NZ_CP023605.1_3738062-3738044|NZ_CP023605.1_3738305-3738287|NZ_CP023605.1_3738438-3738420|NZ_CP023605.1_3802301-3802319|NZ_CP023605.1_3802484-3802502|NZ_CP023605.1_3802652-3802670|NZ_CP023605.1_3930464-3930482|NZ_CP023605.1_3932194-3932212|NZ_CP023605.1_3940701-3940719|NZ_CP023605.1_4031679-4031661|NZ_CP023605.1_4094205-4094223	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023605.1_1207345_1207612_+,NA|61aa|down_3|NZ_CP023605.1_1215187_1215370_+,NA|35aa|down_4|NZ_CP023605.1_1215479_1215584_+	NA|465aa|up_9|NZ_CP023605.1_1201679_1203074_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023605.1_1203275_1203998_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023605.1_1204029_1205196_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023605.1_1205266_1205761_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023605.1_1205946_1206381_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023605.1_1206482_1207349_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023605.1_1207345_1207612_+	NA	NA|674aa|up_2|NZ_CP023605.1_1207598_1209620_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023605.1_1209718_1210447_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023605.1_1210557_1211346_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023605.1_1214002_1214323_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023605.1_1214475_1214910_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP023605.1_1215011_1215176_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023605.1_1215187_1215370_+	NA	NA|35aa|down_4|NZ_CP023605.1_1215479_1215584_+	NA	NA|152aa|down_5|NZ_CP023605.1_1215561_1216017_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023605.1_1216431_1218993_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023605.1_1219210_1220149_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023605.1_1220536_1221817_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023605.1_1221921_1222749_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	9	1572152-1573224	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023605.1_1563915_1564233_+,NA	NA|103aa|up_9|NZ_CP023605.1_1561430_1561739_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023605.1_1561735_1563355_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023605.1_1563915_1564233_+	NA	NA|209aa|up_6|NZ_CP023605.1_1564367_1564994_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023605.1_1565059_1565392_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023605.1_1565407_1566664_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023605.1_1566791_1568003_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023605.1_1568075_1569554_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023605.1_1569550_1570936_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023605.1_1571013_1572048_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023605.1_1574078_1574480_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023605.1_1574476_1574734_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023605.1_1574816_1575776_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023605.1_1575800_1576763_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023605.1_1576896_1577499_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023605.1_1577579_1579547_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023605.1_1579564_1580389_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023605.1_1580557_1581040_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023605.1_1581111_1581936_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023605.1_1582132_1583071_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	10	1636874-1637062	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGGCCCCGCCGGC	18	1	2	1636973-1636990|1636973-1636990	NZ_CP023605.1_2801966-2801983|NZ_CP023605.1_3766685-3766702	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_7|NZ_CP023605.1_1623095_1623209_-,NA|137aa|up_6|NZ_CP023605.1_1623258_1623669_-,NA|288aa|down_2|NZ_CP023605.1_1640652_1641516_+	NA|767aa|up_9|NZ_CP023605.1_1619762_1622063_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|up_8|NZ_CP023605.1_1622178_1622664_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_7|NZ_CP023605.1_1623095_1623209_-	NA	NA|137aa|up_6|NZ_CP023605.1_1623258_1623669_-	NA	NA|248aa|up_5|NZ_CP023605.1_1623685_1624429_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_4|NZ_CP023605.1_1624425_1625337_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_3|NZ_CP023605.1_1625389_1626934_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_2|NZ_CP023605.1_1626930_1628052_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_1|NZ_CP023605.1_1628068_1630171_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|up_0|NZ_CP023605.1_1635001_1635928_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023605.1_1638353_1639619_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023605.1_1639646_1640633_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023605.1_1640652_1641516_+	NA	NA|311aa|down_3|NZ_CP023605.1_1641465_1642398_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023605.1_1642509_1643295_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023605.1_1643291_1644233_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023605.1_1644335_1646111_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023605.1_1646158_1646965_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023605.1_1646961_1649502_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023605.1_1649498_1650692_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	11	2088269-2088523	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088350-2088367|2088350-2088367|2088440-2088457	NZ_CP023605.1_401063-401046|NZ_CP023605.1_607390-607373|NZ_CP023605.1_3450160-3450143	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023605.1_2087628_2087892_-,NA	NA|165aa|up_9|NZ_CP023605.1_2073922_2074417_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023605.1_2074820_2075498_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023605.1_2075856_2078682_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023605.1_2078908_2079769_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023605.1_2079809_2080676_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023605.1_2080680_2082567_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023605.1_2082582_2084616_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023605.1_2084735_2086961_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023605.1_2087236_2087632_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023605.1_2087628_2087892_-	NA	NA|346aa|down_0|NZ_CP023605.1_2089660_2090698_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023605.1_2090697_2092065_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023605.1_2092238_2093675_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023605.1_2093710_2095162_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023605.1_2095191_2096142_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023605.1_2096156_2096573_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023605.1_2096850_2097273_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023605.1_2097321_2097624_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023605.1_2097620_2097935_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023605.1_2097934_2099668_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	12	2163362-2163466	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023605.1_2152409_2152880_-,NA|136aa|up_1|NZ_CP023605.1_2159905_2160313_-,NA|127aa|down_6|NZ_CP023605.1_2176535_2176916_-	NA|157aa|up_9|NZ_CP023605.1_2152409_2152880_-	NA	NA|216aa|up_8|NZ_CP023605.1_2153219_2153867_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023605.1_2153873_2156096_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023605.1_2156133_2156577_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023605.1_2156690_2157284_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023605.1_2157366_2157972_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023605.1_2158071_2159076_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023605.1_2159175_2159928_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023605.1_2159905_2160313_-	NA	NA|767aa|up_0|NZ_CP023605.1_2160447_2162748_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023605.1_2167634_2170598_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023605.1_2171046_2171511_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023605.1_2171608_2172472_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023605.1_2172509_2173781_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023605.1_2174052_2175168_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023605.1_2175158_2176499_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023605.1_2176535_2176916_-	NA	NA|621aa|down_7|NZ_CP023605.1_2177072_2178935_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023605.1_2178942_2179422_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023605.1_2179658_2180432_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	13	2168800-2169019	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023605.1_2159905_2160313_-,NA|127aa|down_5|NZ_CP023605.1_2176535_2176916_-	NA|216aa|up_9|NZ_CP023605.1_2153219_2153867_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023605.1_2153873_2156096_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023605.1_2156133_2156577_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023605.1_2156690_2157284_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023605.1_2157366_2157972_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023605.1_2158071_2159076_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023605.1_2159175_2159928_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023605.1_2159905_2160313_-	NA	NA|767aa|up_1|NZ_CP023605.1_2160447_2162748_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023605.1_2162917_2167297_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023605.1_2171046_2171511_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023605.1_2171608_2172472_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023605.1_2172509_2173781_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023605.1_2174052_2175168_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023605.1_2175158_2176499_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023605.1_2176535_2176916_-	NA	NA|621aa|down_6|NZ_CP023605.1_2177072_2178935_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023605.1_2178942_2179422_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023605.1_2179658_2180432_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP023605.1_2181225_2181870_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	14	3119138-3120492	3,8,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-B,Type III-C,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,18	18	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023605.1_3112417_3112672_-,NA|135aa|up_7|NZ_CP023605.1_3112819_3113224_+,NA|64aa|up_6|NZ_CP023605.1_3113220_3113412_+,NA|86aa|up_4|NZ_CP023605.1_3114998_3115256_+,NA|104aa|up_3|NZ_CP023605.1_3115360_3115672_+,NA|203aa|up_2|NZ_CP023605.1_3116091_3116700_+,NA	NA|92aa|up_9|NZ_CP023605.1_3111966_3112242_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023605.1_3112417_3112672_-	NA	NA|135aa|up_7|NZ_CP023605.1_3112819_3113224_+	NA	NA|64aa|up_6|NZ_CP023605.1_3113220_3113412_+	NA	NA|385aa|up_5|NZ_CP023605.1_3113610_3114765_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023605.1_3114998_3115256_+	NA	NA|104aa|up_3|NZ_CP023605.1_3115360_3115672_+	NA	NA|203aa|up_2|NZ_CP023605.1_3116091_3116700_+	NA	NA|470aa|up_1|NZ_CP023605.1_3116770_3118180_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023605.1_3118176_3118989_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023605.1_3120518_3121780_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023605.1_3123577_3123919_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023605.1_3123919_3124936_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023605.1_3124948_3126097_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023605.1_3126192_3127320_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023605.1_3127316_3128225_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023605.1_3128205_3128916_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023605.1_3128925_3129300_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023605.1_3129296_3131735_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023605.1_3131731_3132454_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	15	3121815-3123529	9,6,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-B,Type III-C,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023605.1_3112417_3112672_-,NA|135aa|up_8|NZ_CP023605.1_3112819_3113224_+,NA|64aa|up_7|NZ_CP023605.1_3113220_3113412_+,NA|86aa|up_5|NZ_CP023605.1_3114998_3115256_+,NA|104aa|up_4|NZ_CP023605.1_3115360_3115672_+,NA|203aa|up_3|NZ_CP023605.1_3116091_3116700_+,NA	NA|85aa|up_9|NZ_CP023605.1_3112417_3112672_-	NA	NA|135aa|up_8|NZ_CP023605.1_3112819_3113224_+	NA	NA|64aa|up_7|NZ_CP023605.1_3113220_3113412_+	NA	NA|385aa|up_6|NZ_CP023605.1_3113610_3114765_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023605.1_3114998_3115256_+	NA	NA|104aa|up_4|NZ_CP023605.1_3115360_3115672_+	NA	NA|203aa|up_3|NZ_CP023605.1_3116091_3116700_+	NA	NA|470aa|up_2|NZ_CP023605.1_3116770_3118180_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023605.1_3118176_3118989_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023605.1_3120518_3121780_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023605.1_3123577_3123919_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023605.1_3123919_3124936_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023605.1_3124948_3126097_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023605.1_3126192_3127320_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023605.1_3127316_3128225_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023605.1_3128205_3128916_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023605.1_3128925_3129300_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023605.1_3129296_3131735_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023605.1_3131731_3132454_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023605.1_3132853_3133399_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	16	3740632-3741173	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023605.1_3755274_3755562_-,NA|87aa|down_9|NZ_CP023605.1_3768682_3768943_-	NA|282aa|up_9|NZ_CP023605.1_3719883_3720729_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023605.1_3721203_3721644_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023605.1_3721677_3722547_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023605.1_3722567_3723578_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023605.1_3723862_3724495_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023605.1_3724561_3725791_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023605.1_3726073_3727423_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023605.1_3727434_3728574_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023605.1_3728570_3729302_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023605.1_3729310_3736882_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023605.1_3743144_3743402_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023605.1_3743657_3753131_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023605.1_3753756_3754203_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023605.1_3754239_3754980_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023605.1_3755274_3755562_-	NA	NA|3717aa|down_5|NZ_CP023605.1_3755898_3767049_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023605.1_3767292_3768087_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023605.1_3768168_3768540_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023605.1_3768437_3768656_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023605.1_3768682_3768943_-	NA
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	17	3762430-3762556	5	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_0|NZ_CP023605.1_3755274_3755562_-,NA|87aa|down_3|NZ_CP023605.1_3768682_3768943_-	NA|410aa|up_9|NZ_CP023605.1_3724561_3725791_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_8|NZ_CP023605.1_3726073_3727423_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_7|NZ_CP023605.1_3727434_3728574_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_6|NZ_CP023605.1_3728570_3729302_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_5|NZ_CP023605.1_3729310_3736882_-	pfam00823, PPE, PPE family	NA|86aa|up_4|NZ_CP023605.1_3743144_3743402_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|up_3|NZ_CP023605.1_3743657_3753131_-	pfam00823, PPE, PPE family	NA|149aa|up_2|NZ_CP023605.1_3753756_3754203_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|up_1|NZ_CP023605.1_3754239_3754980_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_0|NZ_CP023605.1_3755274_3755562_-	NA	NA|265aa|down_0|NZ_CP023605.1_3767292_3768087_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_1|NZ_CP023605.1_3768168_3768540_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_2|NZ_CP023605.1_3768437_3768656_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_3|NZ_CP023605.1_3768682_3768943_-	NA	NA|130aa|down_4|NZ_CP023605.1_3769057_3769447_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_5|NZ_CP023605.1_3769460_3769754_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_6|NZ_CP023605.1_3769750_3770596_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_7|NZ_CP023605.1_3770719_3770995_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_8|NZ_CP023605.1_3770991_3771249_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_9|NZ_CP023605.1_3771290_3772481_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	18	3948309-3950060	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948900-3948935|3948900-3948935|3948900-3948935|3948900-3948935|3948900-3948935|3949791-3949817|3949791-3949817|3949791-3949817|3949791-3949817	NZ_CP023605.1_3947016-3947051|NZ_CP023605.1_3947358-3947393|NZ_CP023605.1_3947949-3947984|NZ_CP023605.1_3948300-3948335|NZ_CP023605.1_3932749-3932784|NZ_CP023605.1_361978-362004|NZ_CP023605.1_3941202-3941228|NZ_CP023605.1_3941538-3941564|NZ_CP023605.1_3941884-3941910	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023605.1_3953375_3954215_+	NA|318aa|up_9|NZ_CP023605.1_3921031_3921985_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023605.1_3922009_3922201_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023605.1_3922415_3923618_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023605.1_3923642_3924764_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023605.1_3924834_3926343_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_4|NZ_CP023605.1_3926513_3930659_+	pfam00934, PE, PE family	NA|1902aa|up_3|NZ_CP023605.1_3930949_3936655_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023605.1_3936821_3938369_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023605.1_3938365_3939202_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023605.1_3945036_3945693_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023605.1_3950768_3952415_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023605.1_3952488_3953280_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023605.1_3953375_3954215_+	NA	NA|399aa|down_3|NZ_CP023605.1_3954269_3955466_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023605.1_3955494_3956205_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023605.1_3956269_3957313_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023605.1_3957465_3958377_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023605.1_3958392_3959457_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_8|NZ_CP023605.1_3960699_3961731_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NZ_CP023605.1_3961744_3962269_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_002447515.1_ASM244751v1	NZ_CP023605	Mycobacterium tuberculosis strain LE79 chromosome, complete genome	19	4110622-4110710	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023605.1_4101208_4101979_-,NA|119aa|up_3|NZ_CP023605.1_4107113_4107470_+,NA|52aa|up_2|NZ_CP023605.1_4107569_4107725_+,NA|233aa|up_0|NZ_CP023605.1_4109726_4110425_-,NA|126aa|down_6|NZ_CP023605.1_4115945_4116323_+	NA|288aa|up_9|NZ_CP023605.1_4099590_4100454_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023605.1_4101208_4101979_-	NA	NA|549aa|up_7|NZ_CP023605.1_4101975_4103622_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023605.1_4103618_4104482_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023605.1_4104474_4105401_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023605.1_4105402_4107028_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023605.1_4107113_4107470_+	NA	NA|52aa|up_2|NZ_CP023605.1_4107569_4107725_+	NA	NA|652aa|up_1|NZ_CP023605.1_4107735_4109691_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023605.1_4109726_4110425_-	NA	NA|173aa|down_0|NZ_CP023605.1_4110770_4111289_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023605.1_4111289_4112273_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023605.1_4112265_4113459_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023605.1_4113464_4114286_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023605.1_4114417_4115101_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023605.1_4115100_4115838_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023605.1_4115945_4116323_+	NA	NA|225aa|down_7|NZ_CP023605.1_4116421_4117096_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023605.1_4117199_4117994_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023605.1_4118000_4118456_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
