The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023609	Mycobacterium tuberculosis strain LN55 chromosome, complete genome	4411186	2940948	2976314	4411186	integrase,transposase,terminase,protease,tRNA,head,capsid	Tupanvirus(11.11%)	42	2969749:2969776	2980731:2980758
WP_003413486.1|2940948_2943027_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943135_2943363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943359_2944745_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945089_2945590_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945606_2946047_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946193_2946871_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946855_2947209_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947221_2947647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2947643_2948318_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948395_2949217_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949352_2950246_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950248_2951067_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951081_2952263_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952321_2952753_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953266_2954508_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954817_2955180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2955526_2956651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956652_2957192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957331_2958630_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958668_2958950_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959094_2959580_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959606_2959864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959864_2962201_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962229_2962472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962472_2963150_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963345_2964002_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964164_2964611_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964785_2965118_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965237_2965597_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965698_2966157_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966292_2966673_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966669_2968166_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968355_2968592_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968664_2968838_+	hypothetical protein	NA	NA	NA	NA	NA
2969749:2969776	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969882_2970314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970310_2971309_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971322_2971787_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971919_2973180_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935348.1|2973207_2973393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901443.1|2973554_2974994_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975001_2975535_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975687_2976314_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980731:2980758	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023609	Mycobacterium tuberculosis strain LN55 chromosome, complete genome	4411186	3710178	3796071	4411186	transposase,tRNA	Burkholderia_virus(28.57%)	56	NA	NA
WP_087902221.1|3710178_3711439_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711494_3711656_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711677_3713207_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713139_3714078_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714086_3715454_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715522_3716740_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716835_3718344_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718340_3719492_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719682_3720528_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721002_3721443_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721476_3722346_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722366_3723377_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723661_3724294_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724360_3725590_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725872_3727222_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727233_3728373_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728369_3729101_+	methyltransferase	NA	NA	NA	NA	NA
WP_096865835.1|3729109_3736681_-	PPE family protein	NA	NA	NA	NA	NA
WP_157771837.1|3736729_3742477_-	PE domain-containing protein	NA	NA	NA	NA	NA
WP_003417619.1|3742906_3743164_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003901612.1|3743419_3752893_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753518_3753965_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003911006.1|3754001_3754742_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755036_3755324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417738.1|3767053_3767848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767929_3768301_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768198_3768417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768443_3768704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768818_3769208_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769221_3769515_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769511_3770357_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770480_3770756_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770752_3771010_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771051_3772242_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772358_3772727_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772723_3773275_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773281_3773863_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773843_3774212_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774189_3774582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901616.1|3774578_3777209_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003901617.1|3777444_3777909_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778275_3780042_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780042_3780687_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780685_3781120_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781208_3784448_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784639_3785980_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786021_3787197_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787250_3787355_+	PE family protein	NA	NA	NA	NA	NA
WP_070893521.1|3787433_3788075_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788075_3788324_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788328_3789756_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789863_3790517_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790555_3792061_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792065_3792956_-	diterpene synthase	NA	NA	NA	NA	NA
WP_078750126.1|3792964_3794758_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794809_3796071_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
