assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	1	333594-334392	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023610.1_333109_333292_-,NA	NA|398aa|up_9|NZ_CP023610.1_323287_324481_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023610.1_324516_326199_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023610.1_326215_328411_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023610.1_328524_329658_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023610.1_329654_330275_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023610.1_330371_330953_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023610.1_330882_331608_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023610.1_331697_332618_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023610.1_332657_333086_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023610.1_333109_333292_-	NA	NA|838aa|down_0|NZ_CP023610.1_336491_339005_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023610.1_339295_340906_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023610.1_340929_341838_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023610.1_342061_343957_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023610.1_343953_345570_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023610.1_345566_349559_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023610.1_349555_349864_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023610.1_349866_351408_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023610.1_351456_351750_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023610.1_351779_352070_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	2	366395-367093	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366683-366724|366758-366790	NZ_CP023610.1_374714-374755|NZ_CP023610.1_373529-373561	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023610.1_363407_363710_+,NA|161aa|down_1|NZ_CP023610.1_376503_376986_-,NA|410aa|down_5|NZ_CP023610.1_379102_380332_+	NA|262aa|up_9|NZ_CP023610.1_358102_358888_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023610.1_358876_359680_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023610.1_359689_361087_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023610.1_361265_363041_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023610.1_363183_363411_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023610.1_363407_363710_+	NA	NA|74aa|up_3|NZ_CP023610.1_363757_363979_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023610.1_363975_364401_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023610.1_364536_365169_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023610.1_365165_366074_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023610.1_375844_376516_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023610.1_376503_376986_-	NA	NA|239aa|down_2|NZ_CP023610.1_377043_377760_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023610.1_377861_378518_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023610.1_378587_379079_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023610.1_379102_380332_+	NA	NA|621aa|down_6|NZ_CP023610.1_380486_382349_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023610.1_382420_382807_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023610.1_382809_383472_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023610.1_383532_384417_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	3	631165-631302	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631183-631200|631183-631200|631267-631284	NZ_CP023610.1_22466-22483|NZ_CP023610.1_1411953-1411970|NZ_CP023610.1_973119-973136	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP023610.1_622003_622165_-,NA|478aa|up_0|NZ_CP023610.1_628180_629614_-,NA|450aa|down_2|NZ_CP023610.1_632937_634287_-,NA|93aa|down_5|NZ_CP023610.1_635817_636096_-	NA|325aa|up_9|NZ_CP023610.1_619773_620748_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP023610.1_620789_622007_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP023610.1_622003_622165_-	NA	NA|106aa|up_6|NZ_CP023610.1_622211_622529_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP023610.1_622675_624460_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP023610.1_624355_625363_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP023610.1_625444_626323_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP023610.1_626339_627134_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP023610.1_627130_628171_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP023610.1_628180_629614_-	NA	NA|211aa|down_0|NZ_CP023610.1_631625_632258_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP023610.1_632254_632917_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP023610.1_632937_634287_-	NA	NA|381aa|down_3|NZ_CP023610.1_634298_635441_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP023610.1_635455_635758_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP023610.1_635817_636096_-	NA	NA|418aa|down_6|NZ_CP023610.1_636092_637346_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP023610.1_637465_637852_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP023610.1_637914_638799_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP023610.1_638894_639797_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	4	691908-691984	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP023610.1_677804_678212_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP023610.1_678271_678958_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP023610.1_679111_681745_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP023610.1_681767_684155_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP023610.1_684292_685015_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP023610.1_685011_685809_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_3|NZ_CP023610.1_685956_686697_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP023610.1_686702_687917_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP023610.1_688940_690386_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP023610.1_690382_691819_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023610.1_693119_694670_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023610.1_694721_695114_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023610.1_695110_695368_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023610.1_695550_696786_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023610.1_697036_697450_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023610.1_697446_697683_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023610.1_697786_698293_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023610.1_698406_698877_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023610.1_698920_699682_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023610.1_699738_700050_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	5	926490-927437	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927273-927308|927273-927308|927273-927308	NZ_CP023610.1_675011-674976|NZ_CP023610.1_1213632-1213667|NZ_CP023610.1_2423662-2423627	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_1|NZ_CP023610.1_931439_931991_-,NA|81aa|down_7|NZ_CP023610.1_937454_937697_+	NA|685aa|up_9|NZ_CP023610.1_914126_916181_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023610.1_916346_917516_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023610.1_917603_918620_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023610.1_918781_919423_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023610.1_919503_920559_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023610.1_920610_921003_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023610.1_921060_921483_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023610.1_921444_921735_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023610.1_921839_922745_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023610.1_922763_923579_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|215aa|down_0|NZ_CP023610.1_930814_931459_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_1|NZ_CP023610.1_931439_931991_-	NA	NA|218aa|down_2|NZ_CP023610.1_932140_932794_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NZ_CP023610.1_932864_933893_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_4|NZ_CP023610.1_934581_935352_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NZ_CP023610.1_935438_936251_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NZ_CP023610.1_936318_937179_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_7|NZ_CP023610.1_937454_937697_+	NA	NA|431aa|down_8|NZ_CP023610.1_937973_939266_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NZ_CP023610.1_939249_940254_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	6	1191199-1191307	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023610.1_1180566_1182198_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023610.1_1182273_1183338_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023610.1_1183390_1183864_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023610.1_1183897_1184761_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023610.1_1184765_1185623_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023610.1_1185623_1186706_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023610.1_1186786_1187206_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023610.1_1187317_1187884_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023610.1_1187880_1188276_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023610.1_1188303_1190307_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023610.1_1192392_1194156_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023610.1_1194152_1194926_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023610.1_1194937_1195975_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023610.1_1196161_1196998_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023610.1_1197113_1197965_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023610.1_1198038_1199256_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023610.1_1199308_1200253_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023610.1_1200475_1201543_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023610.1_1201599_1202994_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023610.1_1203195_1203918_+	pfam06271, RDD, RDD family
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	7	1211833-1212779	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	5	74	1212216-1212237|1212261-1212276|1212399-1212420|1212399-1212420|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212516-1212534|1212690-1212711|1212690-1212711|1212690-1212711|1212690-1212711	NZ_CP023610.1_2960428-2960407|NZ_CP023610.1_2088512-2088497|NZ_CP023610.1_837315-837336|NZ_CP023610.1_1217527-1217548|NZ_CP023610.1_674675-674657|NZ_CP023610.1_1213359-1213377|NZ_CP023610.1_1217500-1217518|NZ_CP023610.1_1217572-1217590|NZ_CP023610.1_1630590-1630572|NZ_CP023610.1_1633407-1633389|NZ_CP023610.1_1990716-1990698|NZ_CP023610.1_2061439-2061421|NZ_CP023610.1_2801974-2801956|NZ_CP023610.1_2805502-2805484|NZ_CP023610.1_150133-150151|NZ_CP023610.1_335151-335133|NZ_CP023610.1_335604-335586|NZ_CP023610.1_335655-335637|NZ_CP023610.1_335664-335646|NZ_CP023610.1_337935-337917|NZ_CP023610.1_338064-338046|NZ_CP023610.1_338331-338313|NZ_CP023610.1_338360-338378|NZ_CP023610.1_338454-338436|NZ_CP023610.1_362985-362967|NZ_CP023610.1_443351-443333|NZ_CP023610.1_546695-546677|NZ_CP023610.1_623866-623884|NZ_CP023610.1_624088-624106|NZ_CP023610.1_673841-673823|NZ_CP023610.1_840098-840116|NZ_CP023610.1_1090861-1090879|NZ_CP023610.1_1091509-1091527|NZ_CP023610.1_1095568-1095550|NZ_CP023610.1_1212888-1212906|NZ_CP023610.1_1213278-1213296|NZ_CP023610.1_1217920-1217938|NZ_CP023610.1_1489097-1489079|NZ_CP023610.1_1618554-1618536|NZ_CP023610.1_1619007-1618989|NZ_CP023610.1_1635920-1635902|NZ_CP023610.1_1635929-1635911|NZ_CP023610.1_1864208-1864190|NZ_CP023610.1_1864736-1864718|NZ_CP023610.1_1989990-1989972|NZ_CP023610.1_2001351-2001369|NZ_CP023610.1_2088710-2088692|NZ_CP023610.1_2303388-2303370|NZ_CP023610.1_2356835-2356817|NZ_CP023610.1_2419488-2419506|NZ_CP023610.1_2423575-2423557|NZ_CP023610.1_2569067-2569049|NZ_CP023610.1_2693365-2693383|NZ_CP023610.1_2795289-2795271|NZ_CP023610.1_2795871-2795853|NZ_CP023610.1_3054465-3054483|NZ_CP023610.1_3054564-3054582|NZ_CP023610.1_3705373-3705391|NZ_CP023610.1_3737337-3737319|NZ_CP023610.1_3737961-3737943|NZ_CP023610.1_3738204-3738186|NZ_CP023610.1_3738337-3738319|NZ_CP023610.1_3802182-3802200|NZ_CP023610.1_3802365-3802383|NZ_CP023610.1_3802533-3802551|NZ_CP023610.1_3930343-3930361|NZ_CP023610.1_3932073-3932091|NZ_CP023610.1_3940580-3940598|NZ_CP023610.1_4031567-4031549|NZ_CP023610.1_4094093-4094111|NZ_CP023610.1_623758-623779|NZ_CP023610.1_37007-36986|NZ_CP023610.1_132045-132066|NZ_CP023610.1_2922179-2922200	NA	18	18	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023610.1_1207265_1207532_+,NA|61aa|down_3|NZ_CP023610.1_1215107_1215290_+,NA|35aa|down_4|NZ_CP023610.1_1215399_1215504_+	NA|465aa|up_9|NZ_CP023610.1_1201599_1202994_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023610.1_1203195_1203918_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023610.1_1203949_1205116_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023610.1_1205186_1205681_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023610.1_1205866_1206301_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023610.1_1206402_1207269_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023610.1_1207265_1207532_+	NA	NA|674aa|up_2|NZ_CP023610.1_1207518_1209540_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023610.1_1209638_1210367_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023610.1_1210477_1211266_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023610.1_1213922_1214243_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023610.1_1214395_1214830_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP023610.1_1214928_1215096_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023610.1_1215107_1215290_+	NA	NA|35aa|down_4|NZ_CP023610.1_1215399_1215504_+	NA	NA|152aa|down_5|NZ_CP023610.1_1215481_1215937_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023610.1_1216351_1218913_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023610.1_1219130_1220069_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023610.1_1220456_1221737_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023610.1_1221841_1222669_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	8	1572072-1573144	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023610.1_1563835_1564153_+,NA	NA|103aa|up_9|NZ_CP023610.1_1561350_1561659_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023610.1_1561655_1563275_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023610.1_1563835_1564153_+	NA	NA|209aa|up_6|NZ_CP023610.1_1564287_1564914_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023610.1_1564979_1565312_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023610.1_1565327_1566584_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023610.1_1566711_1567923_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023610.1_1567995_1569474_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023610.1_1569470_1570856_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023610.1_1570933_1571968_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023610.1_1573997_1574399_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023610.1_1574395_1574653_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023610.1_1574735_1575695_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023610.1_1575719_1576682_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023610.1_1576815_1577418_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023610.1_1577498_1579466_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023610.1_1579483_1580308_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023610.1_1580476_1580959_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023610.1_1581030_1581855_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023610.1_1582051_1582990_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	9	2061557-2062133	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGGCGCCGCCGGCCCCGCCGTTGCCGA	28	3	7	2061846-2061862|2061891-2061910|2061891-2061910|2061990-2062009|2061990-2062009|2061990-2062009|2061990-2062009	NZ_CP023610.1_3674834-3674850|NZ_CP023610.1_836461-836442|NZ_CP023610.1_2356636-2356655|NZ_CP023610.1_1489009-1489028|NZ_CP023610.1_1863946-1863965|NZ_CP023610.1_2088859-2088878|NZ_CP023610.1_2943850-2943869	NA	9	9	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|222aa|up_2|NZ_CP023610.1_2057419_2058085_+,NA	NA|410aa|up_9|NZ_CP023610.1_2049812_2051042_+	pfam00823, PPE, PPE family	NA|469aa|up_8|NZ_CP023610.1_2051173_2052580_+	pfam00823, PPE, PPE family	NA|119aa|up_7|NZ_CP023610.1_2052824_2053181_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|235aa|up_6|NZ_CP023610.1_2053334_2054039_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|401aa|up_5|NZ_CP023610.1_2054048_2055251_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|144aa|up_4|NZ_CP023610.1_2055572_2056004_-	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|301aa|up_3|NZ_CP023610.1_2056412_2057315_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|222aa|up_2|NZ_CP023610.1_2057419_2058085_+	NA	NA|235aa|up_1|NZ_CP023610.1_2058147_2058852_+	pfam13305, WHG, WHG domain	NA|488aa|up_0|NZ_CP023610.1_2059486_2060950_+	PRK07121, PRK07121, FAD-binding protein	NA|640aa|down_0|NZ_CP023610.1_2062700_2064620_-	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|548aa|down_1|NZ_CP023610.1_2064690_2066334_+	PRK05858, PRK05858, acetolactate synthase	NA|809aa|down_2|NZ_CP023610.1_2066348_2068775_+	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|210aa|down_3|NZ_CP023610.1_2068971_2069601_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|308aa|down_4|NZ_CP023610.1_2069593_2070517_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_5|NZ_CP023610.1_2070578_2070911_+	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|293aa|down_6|NZ_CP023610.1_2070927_2071806_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|135aa|down_7|NZ_CP023610.1_2071843_2072248_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|163aa|down_8|NZ_CP023610.1_2072487_2072976_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|248aa|down_9|NZ_CP023610.1_2072972_2073716_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	10	2088182-2088436	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088263-2088280|2088263-2088280|2088353-2088370	NZ_CP023610.1_401010-400993|NZ_CP023610.1_607321-607304|NZ_CP023610.1_3450068-3450051	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023610.1_2087541_2087805_-,NA	NA|248aa|up_9|NZ_CP023610.1_2072972_2073716_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|165aa|up_8|NZ_CP023610.1_2073834_2074329_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_7|NZ_CP023610.1_2074732_2075410_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_6|NZ_CP023610.1_2075768_2078594_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_5|NZ_CP023610.1_2078820_2079681_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_4|NZ_CP023610.1_2079721_2080588_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|678aa|up_3|NZ_CP023610.1_2082495_2084529_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023610.1_2084648_2086874_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023610.1_2087149_2087545_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023610.1_2087541_2087805_-	NA	NA|346aa|down_0|NZ_CP023610.1_2089573_2090611_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023610.1_2090610_2091978_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023610.1_2092151_2093588_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023610.1_2093623_2095075_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023610.1_2095104_2096055_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023610.1_2096069_2096486_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023610.1_2096763_2097186_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023610.1_2097234_2097537_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023610.1_2097533_2097848_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023610.1_2097847_2099581_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	11	2163274-2163378	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023610.1_2152321_2152792_-,NA|136aa|up_1|NZ_CP023610.1_2159817_2160225_-,NA|127aa|down_6|NZ_CP023610.1_2176447_2176828_-	NA|157aa|up_9|NZ_CP023610.1_2152321_2152792_-	NA	NA|216aa|up_8|NZ_CP023610.1_2153131_2153779_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023610.1_2153785_2156008_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023610.1_2156045_2156489_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023610.1_2156602_2157196_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023610.1_2157278_2157884_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023610.1_2157983_2158988_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023610.1_2159087_2159840_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023610.1_2159817_2160225_-	NA	NA|767aa|up_0|NZ_CP023610.1_2160359_2162660_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023610.1_2167546_2170510_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023610.1_2170958_2171423_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023610.1_2171520_2172384_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023610.1_2172421_2173693_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023610.1_2173964_2175080_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023610.1_2175070_2176411_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023610.1_2176447_2176828_-	NA	NA|621aa|down_7|NZ_CP023610.1_2176984_2178847_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023610.1_2178854_2179334_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023610.1_2179570_2180344_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	12	2168712-2168931	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023610.1_2159817_2160225_-,NA|127aa|down_5|NZ_CP023610.1_2176447_2176828_-	NA|216aa|up_9|NZ_CP023610.1_2153131_2153779_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023610.1_2153785_2156008_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023610.1_2156045_2156489_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023610.1_2156602_2157196_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023610.1_2157278_2157884_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023610.1_2157983_2158988_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023610.1_2159087_2159840_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023610.1_2159817_2160225_-	NA	NA|767aa|up_1|NZ_CP023610.1_2160359_2162660_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023610.1_2162829_2167209_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023610.1_2170958_2171423_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023610.1_2171520_2172384_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023610.1_2172421_2173693_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023610.1_2173964_2175080_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023610.1_2175070_2176411_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023610.1_2176447_2176828_-	NA	NA|621aa|down_6|NZ_CP023610.1_2176984_2178847_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023610.1_2178854_2179334_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023610.1_2179570_2180344_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP023610.1_2181137_2181782_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	13	3119053-3120407	1,9,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-B,Type III-D,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,18	18	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023610.1_3112332_3112587_-,NA|135aa|up_7|NZ_CP023610.1_3112734_3113139_+,NA|64aa|up_6|NZ_CP023610.1_3113135_3113327_+,NA|86aa|up_4|NZ_CP023610.1_3114913_3115171_+,NA|104aa|up_3|NZ_CP023610.1_3115275_3115587_+,NA|203aa|up_2|NZ_CP023610.1_3116006_3116615_+,NA	NA|92aa|up_9|NZ_CP023610.1_3111881_3112157_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023610.1_3112332_3112587_-	NA	NA|135aa|up_7|NZ_CP023610.1_3112734_3113139_+	NA	NA|64aa|up_6|NZ_CP023610.1_3113135_3113327_+	NA	NA|385aa|up_5|NZ_CP023610.1_3113525_3114680_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023610.1_3114913_3115171_+	NA	NA|104aa|up_3|NZ_CP023610.1_3115275_3115587_+	NA	NA|203aa|up_2|NZ_CP023610.1_3116006_3116615_+	NA	NA|470aa|up_1|NZ_CP023610.1_3116685_3118095_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023610.1_3118091_3118904_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023610.1_3120433_3121695_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023610.1_3123492_3123834_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023610.1_3123834_3124851_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023610.1_3124863_3126012_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023610.1_3126107_3127235_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023610.1_3127231_3128140_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023610.1_3128120_3128831_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023610.1_3128840_3129215_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023610.1_3129211_3131650_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023610.1_3131646_3132369_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	14	3121730-3123444	10,6,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-B,Type III-D,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023610.1_3112332_3112587_-,NA|135aa|up_8|NZ_CP023610.1_3112734_3113139_+,NA|64aa|up_7|NZ_CP023610.1_3113135_3113327_+,NA|86aa|up_5|NZ_CP023610.1_3114913_3115171_+,NA|104aa|up_4|NZ_CP023610.1_3115275_3115587_+,NA|203aa|up_3|NZ_CP023610.1_3116006_3116615_+,NA	NA|85aa|up_9|NZ_CP023610.1_3112332_3112587_-	NA	NA|135aa|up_8|NZ_CP023610.1_3112734_3113139_+	NA	NA|64aa|up_7|NZ_CP023610.1_3113135_3113327_+	NA	NA|385aa|up_6|NZ_CP023610.1_3113525_3114680_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023610.1_3114913_3115171_+	NA	NA|104aa|up_4|NZ_CP023610.1_3115275_3115587_+	NA	NA|203aa|up_3|NZ_CP023610.1_3116006_3116615_+	NA	NA|470aa|up_2|NZ_CP023610.1_3116685_3118095_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023610.1_3118091_3118904_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023610.1_3120433_3121695_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023610.1_3123492_3123834_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023610.1_3123834_3124851_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023610.1_3124863_3126012_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023610.1_3126107_3127235_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023610.1_3127231_3128140_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023610.1_3128120_3128831_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023610.1_3128840_3129215_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023610.1_3129211_3131650_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023610.1_3131646_3132369_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023610.1_3132768_3133314_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	15	3740531-3741072	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023610.1_3755155_3755443_-,NA|87aa|down_9|NZ_CP023610.1_3768563_3768824_-	NA|384aa|up_9|NZ_CP023610.1_3718441_3719593_+	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|282aa|up_8|NZ_CP023610.1_3719783_3720629_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_7|NZ_CP023610.1_3721103_3721544_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_6|NZ_CP023610.1_3721577_3722447_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_5|NZ_CP023610.1_3722467_3723478_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_4|NZ_CP023610.1_3723762_3724395_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_3|NZ_CP023610.1_3724461_3725691_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_2|NZ_CP023610.1_3725973_3727323_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_1|NZ_CP023610.1_3727334_3728474_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_0|NZ_CP023610.1_3728470_3729202_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|86aa|down_0|NZ_CP023610.1_3743025_3743283_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023610.1_3743538_3753012_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023610.1_3753637_3754084_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023610.1_3754120_3754861_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023610.1_3755155_3755443_-	NA	NA|3717aa|down_5|NZ_CP023610.1_3755779_3766930_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023610.1_3767173_3767968_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023610.1_3768049_3768421_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023610.1_3768318_3768537_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023610.1_3768563_3768824_-	NA
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	16	3762311-3762437	3	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_0|NZ_CP023610.1_3755155_3755443_-,NA|87aa|down_3|NZ_CP023610.1_3768563_3768824_-	NA|211aa|up_9|NZ_CP023610.1_3723762_3724395_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_8|NZ_CP023610.1_3724461_3725691_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_7|NZ_CP023610.1_3725973_3727323_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_6|NZ_CP023610.1_3727334_3728474_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_5|NZ_CP023610.1_3728470_3729202_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|86aa|up_4|NZ_CP023610.1_3743025_3743283_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|up_3|NZ_CP023610.1_3743538_3753012_-	pfam00823, PPE, PPE family	NA|149aa|up_2|NZ_CP023610.1_3753637_3754084_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|up_1|NZ_CP023610.1_3754120_3754861_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_0|NZ_CP023610.1_3755155_3755443_-	NA	NA|265aa|down_0|NZ_CP023610.1_3767173_3767968_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_1|NZ_CP023610.1_3768049_3768421_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_2|NZ_CP023610.1_3768318_3768537_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_3|NZ_CP023610.1_3768563_3768824_-	NA	NA|130aa|down_4|NZ_CP023610.1_3768938_3769328_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_5|NZ_CP023610.1_3769341_3769635_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_6|NZ_CP023610.1_3769631_3770477_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_7|NZ_CP023610.1_3770600_3770876_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_8|NZ_CP023610.1_3770872_3771130_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_9|NZ_CP023610.1_3771171_3772362_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	17	3948197-3949948	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948788-3948823|3948788-3948823|3948788-3948823|3948788-3948823|3948788-3948823|3949679-3949705|3949679-3949705|3949679-3949705|3949679-3949705	NZ_CP023610.1_3946895-3946930|NZ_CP023610.1_3947237-3947272|NZ_CP023610.1_3947837-3947872|NZ_CP023610.1_3948188-3948223|NZ_CP023610.1_3932628-3932663|NZ_CP023610.1_361925-361951|NZ_CP023610.1_3941081-3941107|NZ_CP023610.1_3941417-3941443|NZ_CP023610.1_3941763-3941789	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023610.1_3953263_3954103_+	NA|318aa|up_9|NZ_CP023610.1_3920910_3921864_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023610.1_3921888_3922080_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023610.1_3922294_3923497_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023610.1_3923521_3924643_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023610.1_3924713_3926222_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_4|NZ_CP023610.1_3926392_3930538_+	pfam00934, PE, PE family	NA|1902aa|up_3|NZ_CP023610.1_3930828_3936534_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023610.1_3936700_3938248_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023610.1_3938244_3939081_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023610.1_3944915_3945572_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023610.1_3950656_3952303_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023610.1_3952376_3953168_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023610.1_3953263_3954103_+	NA	NA|399aa|down_3|NZ_CP023610.1_3954157_3955354_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023610.1_3955382_3956093_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023610.1_3956157_3957201_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023610.1_3957353_3958265_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023610.1_3958280_3959345_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023610.1_3959361_3960546_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023610.1_3960587_3961619_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	18	3998368-3998527	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	1	1	3998437-3998457	NZ_CP023610.1_430109-430089	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|89aa|down_8|NZ_CP023610.1_4007999_4008266_-,NA|57aa|down_9|NZ_CP023610.1_4008296_4008467_-	NA|305aa|up_9|NZ_CP023610.1_3987214_3988129_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NZ_CP023610.1_3988151_3988931_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NZ_CP023610.1_3988985_3989729_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NZ_CP023610.1_3989728_3990607_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NZ_CP023610.1_3990603_3991356_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NZ_CP023610.1_3991453_3992521_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NZ_CP023610.1_3992517_3994575_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NZ_CP023610.1_3994662_3995532_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NZ_CP023610.1_3995636_3996797_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NZ_CP023610.1_3996861_3997464_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NZ_CP023610.1_3999479_4000268_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NZ_CP023610.1_4000264_4001422_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NZ_CP023610.1_4001469_4002993_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NZ_CP023610.1_4002993_4004127_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NZ_CP023610.1_4004123_4005083_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NZ_CP023610.1_4005079_4006036_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NZ_CP023610.1_4006032_4007199_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NZ_CP023610.1_4007163_4008015_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NZ_CP023610.1_4007999_4008266_-	NA	NA|57aa|down_9|NZ_CP023610.1_4008296_4008467_-	NA
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	19	3998596-3998973	12	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	3	62	3998620-3998640|3998620-3998640|3998620-3998640|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998665-3998685|3998710-3998730|3998710-3998730|3998710-3998730|3998710-3998730	NZ_CP023610.1_427045-427025|NZ_CP023610.1_427075-427055|NZ_CP023610.1_431366-431346|NZ_CP023610.1_2922861-2922881|NZ_CP023610.1_132244-132264|NZ_CP023610.1_336590-336570|NZ_CP023610.1_528159-528139|NZ_CP023610.1_673045-673025|NZ_CP023610.1_673054-673034|NZ_CP023610.1_673105-673085|NZ_CP023610.1_673114-673094|NZ_CP023610.1_673225-673205|NZ_CP023610.1_673948-673928|NZ_CP023610.1_836818-836838|NZ_CP023610.1_837826-837846|NZ_CP023610.1_839274-839294|NZ_CP023610.1_840597-840617|NZ_CP023610.1_927905-927885|NZ_CP023610.1_968533-968513|NZ_CP023610.1_1091888-1091908|NZ_CP023610.1_1188426-1188406|NZ_CP023610.1_1188480-1188460|NZ_CP023610.1_1385196-1385176|NZ_CP023610.1_1618319-1618299|NZ_CP023610.1_1633067-1633047|NZ_CP023610.1_1636816-1636796|NZ_CP023610.1_1991141-1991121|NZ_CP023610.1_2088535-2088515|NZ_CP023610.1_2089006-2088986|NZ_CP023610.1_2803341-2803321|NZ_CP023610.1_2922963-2922983|NZ_CP023610.1_2960139-2960119|NZ_CP023610.1_3737888-3737868|NZ_CP023610.1_3738477-3738457|NZ_CP023610.1_3738495-3738475|NZ_CP023610.1_3738597-3738577|NZ_CP023610.1_3738741-3738721|NZ_CP023610.1_3739671-3739651|NZ_CP023610.1_3739848-3739828|NZ_CP023610.1_3740424-3740404|NZ_CP023610.1_3779734-3779754|NZ_CP023610.1_3927017-3927037|NZ_CP023610.1_3927113-3927133|NZ_CP023610.1_3928109-3928129|NZ_CP023610.1_3928118-3928138|NZ_CP023610.1_3928127-3928147|NZ_CP023610.1_3928136-3928156|NZ_CP023610.1_3928145-3928165|NZ_CP023610.1_3928898-3928918|NZ_CP023610.1_3929084-3929104|NZ_CP023610.1_3936208-3936228|NZ_CP023610.1_3941058-3941078|NZ_CP023610.1_3941394-3941414|NZ_CP023610.1_3941740-3941760|NZ_CP023610.1_3942382-3942402|NZ_CP023610.1_3943603-3943623|NZ_CP023610.1_3943720-3943740|NZ_CP023610.1_3944167-3944187|NZ_CP023610.1_1262709-1262689|NZ_CP023610.1_427045-427025|NZ_CP023610.1_427075-427055|NZ_CP023610.1_431366-431346	NA	6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|89aa|down_8|NZ_CP023610.1_4007999_4008266_-,NA|57aa|down_9|NZ_CP023610.1_4008296_4008467_-	NA|305aa|up_9|NZ_CP023610.1_3987214_3988129_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NZ_CP023610.1_3988151_3988931_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NZ_CP023610.1_3988985_3989729_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NZ_CP023610.1_3989728_3990607_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NZ_CP023610.1_3990603_3991356_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NZ_CP023610.1_3991453_3992521_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NZ_CP023610.1_3992517_3994575_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NZ_CP023610.1_3994662_3995532_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NZ_CP023610.1_3995636_3996797_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NZ_CP023610.1_3996861_3997464_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NZ_CP023610.1_3999479_4000268_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NZ_CP023610.1_4000264_4001422_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NZ_CP023610.1_4001469_4002993_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NZ_CP023610.1_4002993_4004127_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NZ_CP023610.1_4004123_4005083_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NZ_CP023610.1_4005079_4006036_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NZ_CP023610.1_4006032_4007199_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NZ_CP023610.1_4007163_4008015_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NZ_CP023610.1_4007999_4008266_-	NA	NA|57aa|down_9|NZ_CP023610.1_4008296_4008467_-	NA
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	20	4110510-4110598	13	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023610.1_4101096_4101867_-,NA|119aa|up_3|NZ_CP023610.1_4107001_4107358_+,NA|52aa|up_2|NZ_CP023610.1_4107457_4107613_+,NA|233aa|up_0|NZ_CP023610.1_4109614_4110313_-,NA|126aa|down_6|NZ_CP023610.1_4115833_4116211_+	NA|288aa|up_9|NZ_CP023610.1_4099478_4100342_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023610.1_4101096_4101867_-	NA	NA|549aa|up_7|NZ_CP023610.1_4101863_4103510_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023610.1_4103506_4104370_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023610.1_4104362_4105289_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023610.1_4105290_4106916_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023610.1_4107001_4107358_+	NA	NA|52aa|up_2|NZ_CP023610.1_4107457_4107613_+	NA	NA|652aa|up_1|NZ_CP023610.1_4107623_4109579_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023610.1_4109614_4110313_-	NA	NA|173aa|down_0|NZ_CP023610.1_4110658_4111177_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023610.1_4111177_4112161_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023610.1_4112153_4113347_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023610.1_4113352_4114174_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023610.1_4114305_4114989_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023610.1_4114988_4115726_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023610.1_4115833_4116211_+	NA	NA|225aa|down_7|NZ_CP023610.1_4116309_4116984_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023610.1_4117087_4117882_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023610.1_4117888_4118344_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_002447615.1_ASM244761v1	NZ_CP023610	Mycobacterium tuberculosis strain LN317 chromosome, complete genome	21	4348575-4348653	14	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AAGCGCAGCGATGAGGAGGAGCGGCGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|109aa|up_9|NZ_CP023610.1_4337776_4338103_+,NA|117aa|up_8|NZ_CP023610.1_4338001_4338352_-,NA|184aa|up_3|NZ_CP023610.1_4342599_4343151_+,NA|281aa|down_7|NZ_CP023610.1_4356521_4357364_+	NA|109aa|up_9|NZ_CP023610.1_4337776_4338103_+	NA	NA|117aa|up_8|NZ_CP023610.1_4338001_4338352_-	NA	NA|393aa|up_7|NZ_CP023610.1_4338678_4339857_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|403aa|up_6|NZ_CP023610.1_4340099_4341308_+	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional	NA|104aa|up_5|NZ_CP023610.1_4341395_4341707_+	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm	NA|284aa|up_4|NZ_CP023610.1_4341709_4342561_+	pfam14011, ESX-1_EspG, EspG family	NA|184aa|up_3|NZ_CP023610.1_4342599_4343151_+	NA	NA|574aa|up_2|NZ_CP023610.1_4343143_4344865_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|481aa|up_1|NZ_CP023610.1_4344868_4346311_+	TIGR03919, putative_membrane_protein, type VII secretion protein EccB, Actinobacterial	NA|748aa|up_0|NZ_CP023610.1_4346310_4348554_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|592aa|down_0|NZ_CP023610.1_4348655_4350431_+	TIGR03925, T7SS_EccC_b, type VII secretion protein EccCb	NA|99aa|down_1|NZ_CP023610.1_4350573_4350870_+	pfam00934, PE, PE family	NA|369aa|down_2|NZ_CP023610.1_4350903_4352010_+	pfam00823, PPE, PPE family	NA|101aa|down_3|NZ_CP023610.1_4352102_4352405_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|96aa|down_4|NZ_CP023610.1_4352437_4352725_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|667aa|down_5|NZ_CP023610.1_4352838_4354839_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|512aa|down_6|NZ_CP023610.1_4354835_4356371_+	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|281aa|down_7|NZ_CP023610.1_4356521_4357364_+	NA	NA|116aa|down_8|NZ_CP023610.1_4360004_4360352_-	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|461aa|down_9|NZ_CP023610.1_4360348_4361731_-	pfam18625, EspB_PE, ESX-1 secreted protein B PE domain
