assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	1	338109-338331	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP023612.1_333164_333347_-,NA	NA|561aa|up_9|NZ_CP023612.1_324571_326254_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP023612.1_326270_328466_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP023612.1_328579_329713_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP023612.1_329709_330330_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP023612.1_330426_331008_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP023612.1_330937_331663_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP023612.1_331752_332673_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP023612.1_332712_333141_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP023612.1_333164_333347_-	NA	NA|615aa|up_0|NZ_CP023612.1_333441_335286_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|NZ_CP023612.1_339368_340979_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023612.1_341002_341911_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023612.1_342134_344030_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023612.1_344026_345643_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1332aa|down_4|NZ_CP023612.1_345639_349635_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023612.1_349631_349940_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023612.1_349942_351484_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023612.1_351532_351826_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023612.1_351855_352146_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023612.1_352156_353044_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	2	366446-367144	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366734-366775|366809-366841	NZ_CP023612.1_374765-374806|NZ_CP023612.1_373580-373612	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023612.1_363458_363761_+,NA|161aa|down_1|NZ_CP023612.1_376554_377037_-,NA|410aa|down_5|NZ_CP023612.1_379153_380383_+	NA|401aa|up_9|NZ_CP023612.1_356869_358072_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|262aa|up_8|NZ_CP023612.1_358178_358964_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_7|NZ_CP023612.1_358952_359756_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_6|NZ_CP023612.1_359765_361163_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|76aa|up_5|NZ_CP023612.1_363234_363462_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023612.1_363458_363761_+	NA	NA|74aa|up_3|NZ_CP023612.1_363808_364030_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023612.1_364026_364452_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023612.1_364587_365220_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023612.1_365216_366125_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023612.1_375895_376567_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023612.1_376554_377037_-	NA	NA|239aa|down_2|NZ_CP023612.1_377094_377811_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023612.1_377912_378569_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023612.1_378638_379130_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023612.1_379153_380383_+	NA	NA|621aa|down_6|NZ_CP023612.1_380537_382400_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023612.1_382471_382858_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023612.1_382860_383523_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023612.1_383583_384468_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	3	631225-631362	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631243-631260|631243-631260|631327-631344	NZ_CP023612.1_22466-22483|NZ_CP023612.1_1411994-1412011|NZ_CP023612.1_973162-973179	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP023612.1_622063_622225_-,NA|478aa|up_0|NZ_CP023612.1_628240_629674_-,NA|450aa|down_2|NZ_CP023612.1_632997_634347_-,NA|93aa|down_5|NZ_CP023612.1_635877_636156_-	NA|325aa|up_9|NZ_CP023612.1_619833_620808_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP023612.1_620849_622067_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP023612.1_622063_622225_-	NA	NA|106aa|up_6|NZ_CP023612.1_622271_622589_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP023612.1_622735_624520_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP023612.1_624415_625423_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP023612.1_625504_626383_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP023612.1_626399_627194_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP023612.1_627190_628231_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP023612.1_628240_629674_-	NA	NA|211aa|down_0|NZ_CP023612.1_631685_632318_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP023612.1_632314_632977_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP023612.1_632997_634347_-	NA	NA|381aa|down_3|NZ_CP023612.1_634358_635501_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP023612.1_635515_635818_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP023612.1_635877_636156_-	NA	NA|418aa|down_6|NZ_CP023612.1_636152_637406_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP023612.1_637525_637912_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP023612.1_637974_638859_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP023612.1_638954_639857_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	4	691967-692043	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023612.1_677652_677868_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023612.1_677864_678272_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023612.1_678331_679018_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023612.1_679171_681805_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023612.1_681827_684215_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023612.1_684352_685075_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023612.1_685071_685869_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_2|NZ_CP023612.1_686016_686757_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023612.1_686762_687977_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023612.1_689000_690446_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023612.1_693178_694729_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023612.1_694780_695173_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023612.1_695169_695427_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023612.1_695609_696845_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023612.1_697095_697509_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023612.1_697505_697742_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023612.1_697845_698352_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023612.1_698465_698936_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023612.1_698979_699741_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023612.1_699797_700109_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	5	926551-927498	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927334-927369|927334-927369|927334-927369	NZ_CP023612.1_675071-675036|NZ_CP023612.1_1213674-1213709|NZ_CP023612.1_2423679-2423644	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_1|NZ_CP023612.1_931491_932043_-,NA|81aa|down_7|NZ_CP023612.1_937506_937749_+	NA|685aa|up_9|NZ_CP023612.1_914187_916242_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023612.1_916407_917577_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023612.1_917664_918681_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023612.1_918842_919484_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023612.1_919564_920620_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023612.1_920671_921064_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023612.1_921121_921544_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023612.1_921505_921796_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023612.1_921900_922806_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023612.1_922824_923640_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|215aa|down_0|NZ_CP023612.1_930866_931511_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_1|NZ_CP023612.1_931491_932043_-	NA	NA|218aa|down_2|NZ_CP023612.1_932192_932846_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NZ_CP023612.1_932916_933945_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_4|NZ_CP023612.1_934633_935404_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NZ_CP023612.1_935490_936303_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NZ_CP023612.1_936370_937231_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_7|NZ_CP023612.1_937506_937749_+	NA	NA|431aa|down_8|NZ_CP023612.1_938025_939318_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NZ_CP023612.1_939301_940306_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	6	964494-964745	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGGTGGTGCCAGGTCGGCGGGCGCGGGTGGCGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGT	63	1	1	964667-964722	NZ_CP023612.1_964795-964850	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|NZ_CP023612.1_962592_962793_+,NA	NA|158aa|up_9|NZ_CP023612.1_953169_953643_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|398aa|up_8|NZ_CP023612.1_953639_954833_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|404aa|up_7|NZ_CP023612.1_954989_956201_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|721aa|up_6|NZ_CP023612.1_956205_958368_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|543aa|up_5|NZ_CP023612.1_958435_960064_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|757aa|up_4|NZ_CP023612.1_960254_962525_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|67aa|up_3|NZ_CP023612.1_962592_962793_+	NA	NA|168aa|up_2|NZ_CP023612.1_962802_963306_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|161aa|up_1|NZ_CP023612.1_963302_963785_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|142aa|up_0|NZ_CP023612.1_963781_964207_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|93aa|down_0|NZ_CP023612.1_965895_966174_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|361aa|down_1|NZ_CP023612.1_966177_967260_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|130aa|down_2|NZ_CP023612.1_967256_967646_-	PRK11770, PRK11770, YccF domain-containing protein	NA|136aa|down_3|NZ_CP023612.1_967810_968218_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|610aa|down_4|NZ_CP023612.1_968336_970166_-	pfam00934, PE, PE family	NA|651aa|down_5|NZ_CP023612.1_970426_972379_+	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|387aa|down_6|NZ_CP023612.1_972467_973628_-	COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]	NA|163aa|down_7|NZ_CP023612.1_973727_974216_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|549aa|down_8|NZ_CP023612.1_974212_975859_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|263aa|down_9|NZ_CP023612.1_975996_976785_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	7	1191241-1191349	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023612.1_1180608_1182240_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023612.1_1182315_1183380_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023612.1_1183432_1183906_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023612.1_1183939_1184803_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023612.1_1184807_1185665_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023612.1_1185665_1186748_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023612.1_1186828_1187248_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023612.1_1187359_1187926_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023612.1_1187922_1188318_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023612.1_1188345_1190349_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023612.1_1192434_1194198_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023612.1_1194194_1194968_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023612.1_1194979_1196017_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023612.1_1196203_1197040_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023612.1_1197155_1198007_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023612.1_1198080_1199298_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023612.1_1199350_1200295_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023612.1_1200517_1201585_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023612.1_1201641_1203036_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023612.1_1203237_1203960_+	pfam06271, RDD, RDD family
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	8	1211875-1212731	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	72	1212258-1212279|1212303-1212318|1212441-1212462|1212441-1212462|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576|1212558-1212576	NZ_CP023612.1_2960443-2960422|NZ_CP023612.1_2088511-2088496|NZ_CP023612.1_837376-837397|NZ_CP023612.1_1217569-1217590|NZ_CP023612.1_674735-674717|NZ_CP023612.1_1213401-1213419|NZ_CP023612.1_1217542-1217560|NZ_CP023612.1_1217614-1217632|NZ_CP023612.1_1630614-1630596|NZ_CP023612.1_1633431-1633413|NZ_CP023612.1_1990717-1990699|NZ_CP023612.1_2061439-2061421|NZ_CP023612.1_2061886-2061868|NZ_CP023612.1_2061985-2061967|NZ_CP023612.1_2801992-2801974|NZ_CP023612.1_2805520-2805502|NZ_CP023612.1_150189-150207|NZ_CP023612.1_333787-333769|NZ_CP023612.1_335206-335188|NZ_CP023612.1_335659-335641|NZ_CP023612.1_335710-335692|NZ_CP023612.1_335719-335701|NZ_CP023612.1_338008-337990|NZ_CP023612.1_338404-338386|NZ_CP023612.1_338433-338451|NZ_CP023612.1_338527-338509|NZ_CP023612.1_363036-363018|NZ_CP023612.1_443395-443377|NZ_CP023612.1_546739-546721|NZ_CP023612.1_623926-623944|NZ_CP023612.1_624148-624166|NZ_CP023612.1_673901-673883|NZ_CP023612.1_840159-840177|NZ_CP023612.1_1090904-1090922|NZ_CP023612.1_1091552-1091570|NZ_CP023612.1_1095610-1095592|NZ_CP023612.1_1212930-1212948|NZ_CP023612.1_1213320-1213338|NZ_CP023612.1_1217962-1217980|NZ_CP023612.1_1489138-1489120|NZ_CP023612.1_1618578-1618560|NZ_CP023612.1_1619031-1619013|NZ_CP023612.1_1635944-1635926|NZ_CP023612.1_1635953-1635935|NZ_CP023612.1_1864217-1864199|NZ_CP023612.1_1864736-1864718|NZ_CP023612.1_1989991-1989973|NZ_CP023612.1_2001351-2001369|NZ_CP023612.1_2088709-2088691|NZ_CP023612.1_2303398-2303380|NZ_CP023612.1_2356850-2356832|NZ_CP023612.1_2419505-2419523|NZ_CP023612.1_2423592-2423574|NZ_CP023612.1_2569085-2569067|NZ_CP023612.1_2693383-2693401|NZ_CP023612.1_2795307-2795289|NZ_CP023612.1_2795889-2795871|NZ_CP023612.1_3054479-3054497|NZ_CP023612.1_3054578-3054596|NZ_CP023612.1_3705359-3705377|NZ_CP023612.1_3737335-3737317|NZ_CP023612.1_3737959-3737941|NZ_CP023612.1_3738202-3738184|NZ_CP023612.1_3738335-3738317|NZ_CP023612.1_3802199-3802217|NZ_CP023612.1_3802382-3802400|NZ_CP023612.1_3802550-3802568|NZ_CP023612.1_3930358-3930376|NZ_CP023612.1_3932088-3932106|NZ_CP023612.1_3940577-3940595|NZ_CP023612.1_4031555-4031537|NZ_CP023612.1_4094081-4094099	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023612.1_1207307_1207574_+,NA|61aa|down_3|NZ_CP023612.1_1215149_1215332_+,NA|35aa|down_4|NZ_CP023612.1_1215441_1215546_+	NA|465aa|up_9|NZ_CP023612.1_1201641_1203036_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023612.1_1203237_1203960_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023612.1_1203991_1205158_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023612.1_1205228_1205723_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023612.1_1205908_1206343_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023612.1_1206444_1207311_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023612.1_1207307_1207574_+	NA	NA|674aa|up_2|NZ_CP023612.1_1207560_1209582_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023612.1_1209680_1210409_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023612.1_1210519_1211308_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023612.1_1213964_1214285_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023612.1_1214437_1214872_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP023612.1_1214970_1215138_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023612.1_1215149_1215332_+	NA	NA|35aa|down_4|NZ_CP023612.1_1215441_1215546_+	NA	NA|152aa|down_5|NZ_CP023612.1_1215523_1215979_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023612.1_1216393_1218955_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023612.1_1219172_1220111_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023612.1_1220498_1221779_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023612.1_1221883_1222711_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	9	1572113-1573185	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023612.1_1563876_1564194_+,NA	NA|103aa|up_9|NZ_CP023612.1_1561391_1561700_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023612.1_1561696_1563316_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023612.1_1563876_1564194_+	NA	NA|209aa|up_6|NZ_CP023612.1_1564328_1564955_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023612.1_1565020_1565353_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023612.1_1565368_1566625_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023612.1_1566752_1567964_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023612.1_1568036_1569515_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023612.1_1569511_1570897_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023612.1_1570974_1572009_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023612.1_1574039_1574441_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023612.1_1574437_1574695_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023612.1_1574777_1575737_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023612.1_1575761_1576724_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023612.1_1576857_1577460_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023612.1_1577540_1579508_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023612.1_1579525_1580350_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023612.1_1580518_1581001_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023612.1_1581072_1581897_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023612.1_1582093_1583032_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	10	2088181-2088435	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088262-2088279|2088262-2088279|2088352-2088369	NZ_CP023612.1_401061-401044|NZ_CP023612.1_607381-607364|NZ_CP023612.1_3450060-3450043	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023612.1_2087540_2087804_-,NA	NA|165aa|up_9|NZ_CP023612.1_2073834_2074329_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023612.1_2074732_2075410_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023612.1_2075768_2078594_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023612.1_2078820_2079681_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023612.1_2079721_2080588_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023612.1_2080592_2082479_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023612.1_2082494_2084528_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023612.1_2084647_2086873_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023612.1_2087148_2087544_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023612.1_2087540_2087804_-	NA	NA|346aa|down_0|NZ_CP023612.1_2089572_2090610_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023612.1_2090609_2091977_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023612.1_2092150_2093587_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023612.1_2093622_2095074_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023612.1_2095103_2096054_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023612.1_2096068_2096485_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023612.1_2096762_2097185_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023612.1_2097233_2097536_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023612.1_2097532_2097847_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023612.1_2097846_2099580_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	11	2163262-2163366	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023612.1_2159806_2160214_-,NA|127aa|down_6|NZ_CP023612.1_2176435_2176816_-	NA|216aa|up_9|NZ_CP023612.1_2153120_2153768_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023612.1_2153774_2155997_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023612.1_2156034_2156478_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023612.1_2156591_2157185_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023612.1_2157267_2157873_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023612.1_2157972_2158977_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023612.1_2159076_2159829_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023612.1_2159806_2160214_-	NA	NA|368aa|up_1|NZ_CP023612.1_2160348_2161452_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP023612.1_2161451_2162648_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP023612.1_2167534_2170498_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023612.1_2170946_2171411_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023612.1_2171508_2172372_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023612.1_2172409_2173681_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023612.1_2173952_2175068_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023612.1_2175058_2176399_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023612.1_2176435_2176816_-	NA	NA|621aa|down_7|NZ_CP023612.1_2176972_2178835_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023612.1_2178842_2179322_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023612.1_2179558_2180332_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	12	2168700-2168919	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP023612.1_2159806_2160214_-,NA|127aa|down_5|NZ_CP023612.1_2176435_2176816_-	NA|741aa|up_9|NZ_CP023612.1_2153774_2155997_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP023612.1_2156034_2156478_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP023612.1_2156591_2157185_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP023612.1_2157267_2157873_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP023612.1_2157972_2158977_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP023612.1_2159076_2159829_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP023612.1_2159806_2160214_-	NA	NA|368aa|up_2|NZ_CP023612.1_2160348_2161452_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP023612.1_2161451_2162648_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP023612.1_2162817_2167197_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023612.1_2170946_2171411_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023612.1_2171508_2172372_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023612.1_2172409_2173681_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023612.1_2173952_2175068_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023612.1_2175058_2176399_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023612.1_2176435_2176816_-	NA	NA|621aa|down_6|NZ_CP023612.1_2176972_2178835_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023612.1_2178842_2179322_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023612.1_2179558_2180332_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023612.1_2180335_2181103_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	13	3119061-3120415	3,8,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023612.1_3112340_3112595_-,NA|135aa|up_7|NZ_CP023612.1_3112742_3113147_+,NA|64aa|up_6|NZ_CP023612.1_3113143_3113335_+,NA|86aa|up_4|NZ_CP023612.1_3114921_3115179_+,NA|104aa|up_3|NZ_CP023612.1_3115283_3115595_+,NA|203aa|up_2|NZ_CP023612.1_3116014_3116623_+,NA	NA|92aa|up_9|NZ_CP023612.1_3111889_3112165_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023612.1_3112340_3112595_-	NA	NA|135aa|up_7|NZ_CP023612.1_3112742_3113147_+	NA	NA|64aa|up_6|NZ_CP023612.1_3113143_3113335_+	NA	NA|385aa|up_5|NZ_CP023612.1_3113533_3114688_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023612.1_3114921_3115179_+	NA	NA|104aa|up_3|NZ_CP023612.1_3115283_3115595_+	NA	NA|203aa|up_2|NZ_CP023612.1_3116014_3116623_+	NA	NA|470aa|up_1|NZ_CP023612.1_3116693_3118103_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023612.1_3118099_3118912_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023612.1_3120441_3121703_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023612.1_3123500_3123842_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023612.1_3123842_3124859_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023612.1_3124871_3126020_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023612.1_3126115_3127243_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023612.1_3127239_3128148_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023612.1_3128128_3128839_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023612.1_3128848_3129223_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_8|NZ_CP023612.1_3129219_3131649_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023612.1_3131645_3132368_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	14	3121738-3123452	9,5,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023612.1_3112340_3112595_-,NA|135aa|up_8|NZ_CP023612.1_3112742_3113147_+,NA|64aa|up_7|NZ_CP023612.1_3113143_3113335_+,NA|86aa|up_5|NZ_CP023612.1_3114921_3115179_+,NA|104aa|up_4|NZ_CP023612.1_3115283_3115595_+,NA|203aa|up_3|NZ_CP023612.1_3116014_3116623_+,NA	NA|85aa|up_9|NZ_CP023612.1_3112340_3112595_-	NA	NA|135aa|up_8|NZ_CP023612.1_3112742_3113147_+	NA	NA|64aa|up_7|NZ_CP023612.1_3113143_3113335_+	NA	NA|385aa|up_6|NZ_CP023612.1_3113533_3114688_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023612.1_3114921_3115179_+	NA	NA|104aa|up_4|NZ_CP023612.1_3115283_3115595_+	NA	NA|203aa|up_3|NZ_CP023612.1_3116014_3116623_+	NA	NA|470aa|up_2|NZ_CP023612.1_3116693_3118103_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023612.1_3118099_3118912_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023612.1_3120441_3121703_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023612.1_3123500_3123842_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023612.1_3123842_3124859_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023612.1_3124871_3126020_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023612.1_3126115_3127243_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023612.1_3127239_3128148_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023612.1_3128128_3128839_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023612.1_3128848_3129223_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_7|NZ_CP023612.1_3129219_3131649_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023612.1_3131645_3132368_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023612.1_3132767_3133313_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	15	3740529-3741070	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023612.1_3755171_3755459_-,NA|87aa|down_9|NZ_CP023612.1_3768580_3768841_-	NA|384aa|up_9|NZ_CP023612.1_3718439_3719591_+	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|282aa|up_8|NZ_CP023612.1_3719781_3720627_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_7|NZ_CP023612.1_3721101_3721542_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_6|NZ_CP023612.1_3721575_3722445_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_5|NZ_CP023612.1_3722465_3723476_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_4|NZ_CP023612.1_3723760_3724393_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_3|NZ_CP023612.1_3724459_3725689_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_2|NZ_CP023612.1_3725971_3727321_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_1|NZ_CP023612.1_3727332_3728472_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_0|NZ_CP023612.1_3728468_3729200_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|86aa|down_0|NZ_CP023612.1_3743041_3743299_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023612.1_3743554_3753028_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023612.1_3753653_3754100_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023612.1_3754136_3754877_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023612.1_3755171_3755459_-	NA	NA|3717aa|down_5|NZ_CP023612.1_3755795_3766946_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023612.1_3767190_3767985_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023612.1_3768066_3768438_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023612.1_3768335_3768554_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023612.1_3768580_3768841_-	NA
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	16	3948185-3949936	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948776-3948811|3948776-3948811|3948776-3948811|3948776-3948811|3948776-3948811|3949667-3949693|3949667-3949693|3949667-3949693|3949667-3949693	NZ_CP023612.1_3946892-3946927|NZ_CP023612.1_3947234-3947269|NZ_CP023612.1_3947825-3947860|NZ_CP023612.1_3948176-3948211|NZ_CP023612.1_3932643-3932678|NZ_CP023612.1_362001-362027|NZ_CP023612.1_3941078-3941104|NZ_CP023612.1_3941414-3941440|NZ_CP023612.1_3941760-3941786	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023612.1_3953251_3954091_+	NA|318aa|up_9|NZ_CP023612.1_3920925_3921879_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023612.1_3921903_3922095_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023612.1_3922309_3923512_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023612.1_3923536_3924658_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023612.1_3924728_3926237_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_4|NZ_CP023612.1_3926407_3930553_+	pfam00934, PE, PE family	NA|1896aa|up_3|NZ_CP023612.1_3930843_3936531_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023612.1_3936697_3938245_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023612.1_3938241_3939078_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023612.1_3944912_3945569_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023612.1_3950644_3952291_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023612.1_3952364_3953156_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023612.1_3953251_3954091_+	NA	NA|399aa|down_3|NZ_CP023612.1_3954145_3955342_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023612.1_3955370_3956081_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023612.1_3956145_3957189_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023612.1_3957341_3958253_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023612.1_3958268_3959333_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023612.1_3959349_3960534_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023612.1_3960575_3961607_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	17	3998356-3998515	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	1	1	3998425-3998445	NZ_CP023612.1_430153-430133	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|89aa|down_8|NZ_CP023612.1_4007987_4008254_-,NA|57aa|down_9|NZ_CP023612.1_4008284_4008455_-	NA|305aa|up_9|NZ_CP023612.1_3987202_3988117_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NZ_CP023612.1_3988139_3988919_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NZ_CP023612.1_3988973_3989717_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NZ_CP023612.1_3989716_3990595_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NZ_CP023612.1_3990591_3991344_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NZ_CP023612.1_3991441_3992509_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NZ_CP023612.1_3992505_3994563_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NZ_CP023612.1_3994650_3995520_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NZ_CP023612.1_3995624_3996785_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NZ_CP023612.1_3996849_3997452_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NZ_CP023612.1_3999467_4000256_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NZ_CP023612.1_4000252_4001410_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NZ_CP023612.1_4001457_4002981_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NZ_CP023612.1_4002981_4004115_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NZ_CP023612.1_4004111_4005071_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NZ_CP023612.1_4005067_4006024_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NZ_CP023612.1_4006020_4007187_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NZ_CP023612.1_4007151_4008003_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NZ_CP023612.1_4007987_4008254_-	NA	NA|57aa|down_9|NZ_CP023612.1_4008284_4008455_-	NA
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	18	3998584-3998961	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	3	62	3998608-3998628|3998608-3998628|3998608-3998628|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998653-3998673|3998698-3998718|3998698-3998718|3998698-3998718|3998698-3998718	NZ_CP023612.1_427096-427076|NZ_CP023612.1_427126-427106|NZ_CP023612.1_431410-431390|NZ_CP023612.1_2922876-2922896|NZ_CP023612.1_132299-132319|NZ_CP023612.1_336663-336643|NZ_CP023612.1_528203-528183|NZ_CP023612.1_673105-673085|NZ_CP023612.1_673114-673094|NZ_CP023612.1_673165-673145|NZ_CP023612.1_673174-673154|NZ_CP023612.1_673285-673265|NZ_CP023612.1_674008-673988|NZ_CP023612.1_836879-836899|NZ_CP023612.1_837887-837907|NZ_CP023612.1_839335-839355|NZ_CP023612.1_840658-840678|NZ_CP023612.1_927966-927946|NZ_CP023612.1_968576-968556|NZ_CP023612.1_1091931-1091951|NZ_CP023612.1_1188468-1188448|NZ_CP023612.1_1188522-1188502|NZ_CP023612.1_1385237-1385217|NZ_CP023612.1_1618352-1618332|NZ_CP023612.1_1633091-1633071|NZ_CP023612.1_1991142-1991122|NZ_CP023612.1_2088534-2088514|NZ_CP023612.1_2089005-2088985|NZ_CP023612.1_2803359-2803339|NZ_CP023612.1_2922978-2922998|NZ_CP023612.1_2960154-2960134|NZ_CP023612.1_3737886-3737866|NZ_CP023612.1_3738475-3738455|NZ_CP023612.1_3738493-3738473|NZ_CP023612.1_3738544-3738524|NZ_CP023612.1_3738595-3738575|NZ_CP023612.1_3738739-3738719|NZ_CP023612.1_3739669-3739649|NZ_CP023612.1_3739846-3739826|NZ_CP023612.1_3740422-3740402|NZ_CP023612.1_3779751-3779771|NZ_CP023612.1_3927032-3927052|NZ_CP023612.1_3927128-3927148|NZ_CP023612.1_3928124-3928144|NZ_CP023612.1_3928133-3928153|NZ_CP023612.1_3928142-3928162|NZ_CP023612.1_3928151-3928171|NZ_CP023612.1_3928160-3928180|NZ_CP023612.1_3928913-3928933|NZ_CP023612.1_3929108-3929128|NZ_CP023612.1_3936205-3936225|NZ_CP023612.1_3941055-3941075|NZ_CP023612.1_3941391-3941411|NZ_CP023612.1_3941737-3941757|NZ_CP023612.1_3942379-3942399|NZ_CP023612.1_3943600-3943620|NZ_CP023612.1_3943717-3943737|NZ_CP023612.1_3944164-3944184|NZ_CP023612.1_1262751-1262731|NZ_CP023612.1_427096-427076|NZ_CP023612.1_427126-427106|NZ_CP023612.1_431410-431390	NA	6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|89aa|down_8|NZ_CP023612.1_4007987_4008254_-,NA|57aa|down_9|NZ_CP023612.1_4008284_4008455_-	NA|305aa|up_9|NZ_CP023612.1_3987202_3988117_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NZ_CP023612.1_3988139_3988919_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NZ_CP023612.1_3988973_3989717_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NZ_CP023612.1_3989716_3990595_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NZ_CP023612.1_3990591_3991344_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NZ_CP023612.1_3991441_3992509_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NZ_CP023612.1_3992505_3994563_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NZ_CP023612.1_3994650_3995520_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NZ_CP023612.1_3995624_3996785_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NZ_CP023612.1_3996849_3997452_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NZ_CP023612.1_3999467_4000256_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NZ_CP023612.1_4000252_4001410_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NZ_CP023612.1_4001457_4002981_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NZ_CP023612.1_4002981_4004115_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NZ_CP023612.1_4004111_4005071_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NZ_CP023612.1_4005067_4006024_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NZ_CP023612.1_4006020_4007187_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NZ_CP023612.1_4007151_4008003_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NZ_CP023612.1_4007987_4008254_-	NA	NA|57aa|down_9|NZ_CP023612.1_4008284_4008455_-	NA
GCF_002447655.1_ASM244765v1	NZ_CP023612	Mycobacterium tuberculosis strain LN2978 chromosome, complete genome	19	4110498-4110586	12	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023612.1_4101084_4101855_-,NA|119aa|up_3|NZ_CP023612.1_4106989_4107346_+,NA|52aa|up_2|NZ_CP023612.1_4107445_4107601_+,NA|233aa|up_0|NZ_CP023612.1_4109602_4110301_-,NA|126aa|down_5|NZ_CP023612.1_4115817_4116195_+	NA|288aa|up_9|NZ_CP023612.1_4099466_4100330_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023612.1_4101084_4101855_-	NA	NA|549aa|up_7|NZ_CP023612.1_4101851_4103498_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023612.1_4103494_4104358_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023612.1_4104350_4105277_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023612.1_4105278_4106904_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023612.1_4106989_4107346_+	NA	NA|52aa|up_2|NZ_CP023612.1_4107445_4107601_+	NA	NA|652aa|up_1|NZ_CP023612.1_4107611_4109567_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023612.1_4109602_4110301_-	NA	NA|173aa|down_0|NZ_CP023612.1_4110646_4111165_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023612.1_4111165_4112149_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023612.1_4112141_4113335_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|228aa|down_3|NZ_CP023612.1_4114289_4114973_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_4|NZ_CP023612.1_4114972_4115710_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_5|NZ_CP023612.1_4115817_4116195_+	NA	NA|225aa|down_6|NZ_CP023612.1_4116293_4116968_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_7|NZ_CP023612.1_4117073_4117868_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_8|NZ_CP023612.1_4117874_4118330_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|54aa|down_9|NZ_CP023612.1_4118345_4118507_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)
