The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023613	Mycobacterium tuberculosis strain LN3584 chromosome, complete genome	4411326	2941069	2976435	4411326	protease,terminase,capsid,tRNA,transposase,integrase,head	Tupanvirus(11.11%)	41	2969870:2969897	2980852:2980879
WP_003413486.1|2941069_2943148_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943256_2943484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943480_2944866_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945210_2945711_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945727_2946168_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946314_2946992_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946976_2947330_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947342_2947768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947764_2948439_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948516_2949338_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949473_2950367_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950369_2951188_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951202_2952384_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952442_2952874_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953387_2954629_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954938_2955301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955647_2956772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956773_2957313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957452_2958751_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958789_2959071_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959215_2959701_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959727_2959985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959985_2962322_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962350_2962593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962593_2963271_+	membrane protein	NA	NA	NA	NA	NA
WP_012054325.1|2963466_2964123_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964285_2964732_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964906_2965239_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965358_2965718_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965819_2966278_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966413_2966794_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966790_2968287_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968476_2968713_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968785_2968959_+	hypothetical protein	NA	NA	NA	NA	NA
2969870:2969897	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970003_2970435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970431_2971430_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971443_2971908_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972040_2973301_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935349.1|2973675_2975115_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975122_2975656_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975808_2976435_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980852:2980879	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023613	Mycobacterium tuberculosis strain LN3584 chromosome, complete genome	4411326	3710247	3796167	4411326	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710247_3711508_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711563_3711725_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711746_3713276_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713208_3714147_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714155_3715523_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715591_3716809_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716904_3718413_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718409_3719561_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719751_3720597_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721071_3721512_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721545_3722415_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722435_3723446_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723730_3724363_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724429_3725659_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725941_3727291_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727302_3728442_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728438_3729170_+	methyltransferase	NA	NA	NA	NA	NA
WP_023637497.1|3729178_3736750_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743003_3743261_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743516_3752990_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753615_3754062_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754098_3754839_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755133_3755421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755757_3766908_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767151_3767946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768027_3768399_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768296_3768515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768541_3768802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768916_3769306_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769319_3769613_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769609_3770455_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770578_3770854_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770850_3771108_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012054356.1|3771149_3772340_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772456_3772825_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772821_3773373_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773379_3773961_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773941_3774310_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774287_3774680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774676_3777307_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777542_3778007_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778373_3780140_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780140_3780785_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780783_3781218_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781306_3784546_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784737_3786078_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786119_3787295_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787348_3787453_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787531_3788173_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788173_3788422_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012054357.1|3788426_3789854_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789961_3790615_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790653_3792159_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792163_3793054_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793062_3794673_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794617_3794863_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794905_3796167_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
