assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	1	338074-338296	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP023620.1_333147_333330_-,NA	NA|561aa|up_9|NZ_CP023620.1_324554_326237_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP023620.1_326253_328449_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP023620.1_328562_329696_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP023620.1_329692_330313_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP023620.1_330409_330991_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP023620.1_330920_331646_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP023620.1_331735_332656_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP023620.1_332695_333124_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP023620.1_333147_333330_-	NA	NA|615aa|up_0|NZ_CP023620.1_333424_335269_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|NZ_CP023620.1_339333_340944_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023620.1_340967_341876_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023620.1_342099_343995_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023620.1_343991_345608_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023620.1_345604_349597_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023620.1_349593_349902_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023620.1_349904_351446_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023620.1_351494_351788_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023620.1_351817_352108_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023620.1_352118_353006_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	2	366433-367131	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366721-366762|366796-366828	NZ_CP023620.1_374752-374793|NZ_CP023620.1_373567-373599	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023620.1_363445_363748_+,NA|161aa|down_1|NZ_CP023620.1_376541_377024_-,NA|410aa|down_5|NZ_CP023620.1_379140_380370_+	NA|262aa|up_9|NZ_CP023620.1_358140_358926_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023620.1_358914_359718_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023620.1_359727_361125_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023620.1_361303_363079_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023620.1_363221_363449_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023620.1_363445_363748_+	NA	NA|74aa|up_3|NZ_CP023620.1_363795_364017_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023620.1_364013_364439_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023620.1_364574_365207_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023620.1_365203_366112_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023620.1_375882_376554_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023620.1_376541_377024_-	NA	NA|239aa|down_2|NZ_CP023620.1_377081_377798_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023620.1_377899_378556_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023620.1_378625_379117_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023620.1_379140_380370_+	NA	NA|621aa|down_6|NZ_CP023620.1_380524_382387_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023620.1_382458_382845_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023620.1_382847_383510_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023620.1_383570_384455_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	3	691895-691971	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023620.1_677579_677795_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023620.1_677791_678199_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023620.1_678258_678945_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023620.1_679098_681732_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023620.1_681754_684142_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023620.1_684279_685002_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023620.1_684998_685796_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP023620.1_685797_686685_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023620.1_686690_687905_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023620.1_688928_690374_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023620.1_693106_694657_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023620.1_694708_695101_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023620.1_695097_695355_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023620.1_695537_696773_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023620.1_697023_697437_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023620.1_697433_697670_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023620.1_697773_698280_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023620.1_698393_698864_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023620.1_698907_699669_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023620.1_699725_700037_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	4	926482-927429	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927265-927300|927265-927300|927265-927300	NZ_CP023620.1_674998-674963|NZ_CP023620.1_1213598-1213633|NZ_CP023620.1_2423575-2423540	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023620.1_931439_931991_-,NA|81aa|down_8|NZ_CP023620.1_937454_937697_+	NA|390aa|up_9|NZ_CP023620.1_916347_917517_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_8|NZ_CP023620.1_917604_918621_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_7|NZ_CP023620.1_918782_919424_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_6|NZ_CP023620.1_919504_920560_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_5|NZ_CP023620.1_920611_921004_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_4|NZ_CP023620.1_921061_921484_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_3|NZ_CP023620.1_921445_921736_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_2|NZ_CP023620.1_921840_922746_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NZ_CP023620.1_922764_923580_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|138aa|up_0|NZ_CP023620.1_924821_925235_+	pfam00934, PE, PE family	NA|883aa|down_0|NZ_CP023620.1_927698_930347_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023620.1_930814_931459_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023620.1_931439_931991_-	NA	NA|218aa|down_3|NZ_CP023620.1_932140_932794_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023620.1_932864_933893_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023620.1_934581_935352_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023620.1_935438_936251_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023620.1_936318_937179_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023620.1_937454_937697_+	NA	NA|431aa|down_9|NZ_CP023620.1_937973_939266_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	5	1191180-1191288	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023620.1_1180550_1182182_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023620.1_1182257_1183322_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023620.1_1183374_1183848_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023620.1_1183881_1184745_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023620.1_1184749_1185607_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023620.1_1185607_1186690_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023620.1_1186770_1187190_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023620.1_1187301_1187868_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023620.1_1187864_1188260_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|667aa|up_0|NZ_CP023620.1_1188287_1190288_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023620.1_1192373_1194137_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023620.1_1194133_1194907_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023620.1_1194918_1195956_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023620.1_1196142_1196979_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023620.1_1197094_1197946_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023620.1_1198019_1199237_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023620.1_1199289_1200234_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023620.1_1200456_1201524_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023620.1_1201580_1202975_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023620.1_1203176_1203899_+	pfam06271, RDD, RDD family
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	6	1572038-1573109	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1572238-1572259	NZ_CP023620.1_1211927-1211906	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023620.1_1563801_1564119_+,NA	NA|103aa|up_9|NZ_CP023620.1_1561316_1561625_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023620.1_1561621_1563241_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023620.1_1563801_1564119_+	NA	NA|209aa|up_6|NZ_CP023620.1_1564253_1564880_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023620.1_1564945_1565278_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023620.1_1565293_1566550_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023620.1_1566677_1567889_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023620.1_1567961_1569440_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023620.1_1569436_1570822_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023620.1_1570899_1571934_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023620.1_1573963_1574365_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023620.1_1574361_1574619_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023620.1_1574701_1575661_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023620.1_1575685_1576648_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023620.1_1576781_1577384_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023620.1_1577464_1579432_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023620.1_1579449_1580274_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023620.1_1580442_1580925_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023620.1_1580996_1581821_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023620.1_1582017_1582956_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	7	1636477-1636695	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCGCT	40	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP023620.1_1622975_1623089_-,NA|137aa|up_7|NZ_CP023620.1_1623138_1623549_-,NA|288aa|down_2|NZ_CP023620.1_1640531_1641395_+	NA|162aa|up_9|NZ_CP023620.1_1622058_1622544_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP023620.1_1622975_1623089_-	NA	NA|137aa|up_7|NZ_CP023620.1_1623138_1623549_-	NA	NA|248aa|up_6|NZ_CP023620.1_1623565_1624309_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP023620.1_1624305_1625217_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP023620.1_1625269_1626814_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP023620.1_1626810_1627932_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP023620.1_1627948_1630051_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP023620.1_1630489_1634479_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP023620.1_1634880_1635807_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023620.1_1638232_1639498_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023620.1_1639525_1640512_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023620.1_1640531_1641395_+	NA	NA|311aa|down_3|NZ_CP023620.1_1641344_1642277_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023620.1_1642388_1643174_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023620.1_1643170_1644112_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023620.1_1644214_1645990_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023620.1_1646037_1646844_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023620.1_1646840_1649381_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023620.1_1649377_1650571_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	8	2088130-2088384	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088211-2088228|2088211-2088228|2088301-2088318	NZ_CP023620.1_401048-401031|NZ_CP023620.1_607317-607300|NZ_CP023620.1_3449997-3449980	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023620.1_2087489_2087753_-,NA	NA|165aa|up_9|NZ_CP023620.1_2073783_2074278_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023620.1_2074681_2075359_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023620.1_2075717_2078543_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023620.1_2078769_2079630_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023620.1_2079670_2080537_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023620.1_2080541_2082428_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023620.1_2082443_2084477_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023620.1_2084596_2086822_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023620.1_2087097_2087493_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023620.1_2087489_2087753_-	NA	NA|346aa|down_0|NZ_CP023620.1_2089521_2090559_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023620.1_2090558_2091926_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023620.1_2092099_2093536_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023620.1_2093571_2095023_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023620.1_2095052_2096003_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023620.1_2096017_2096434_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023620.1_2096711_2097134_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023620.1_2097182_2097485_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023620.1_2097481_2097796_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023620.1_2097795_2099529_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	9	2163221-2163325	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023620.1_2159765_2160173_-,NA|127aa|down_6|NZ_CP023620.1_2176394_2176775_-	NA|216aa|up_9|NZ_CP023620.1_2153079_2153727_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023620.1_2153733_2155956_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023620.1_2155993_2156437_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023620.1_2156550_2157144_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023620.1_2157226_2157832_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023620.1_2157931_2158936_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023620.1_2159035_2159788_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023620.1_2159765_2160173_-	NA	NA|368aa|up_1|NZ_CP023620.1_2160307_2161411_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP023620.1_2161410_2162607_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP023620.1_2167493_2170457_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023620.1_2170905_2171370_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023620.1_2171467_2172331_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023620.1_2172368_2173640_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023620.1_2173911_2175027_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023620.1_2175017_2176358_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023620.1_2176394_2176775_-	NA	NA|621aa|down_7|NZ_CP023620.1_2176931_2178794_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023620.1_2178801_2179281_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023620.1_2179517_2180291_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	10	2168659-2168878	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP023620.1_2159765_2160173_-,NA|127aa|down_5|NZ_CP023620.1_2176394_2176775_-	NA|741aa|up_9|NZ_CP023620.1_2153733_2155956_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP023620.1_2155993_2156437_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP023620.1_2156550_2157144_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP023620.1_2157226_2157832_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP023620.1_2157931_2158936_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP023620.1_2159035_2159788_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP023620.1_2159765_2160173_-	NA	NA|368aa|up_2|NZ_CP023620.1_2160307_2161411_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP023620.1_2161410_2162607_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP023620.1_2162776_2167156_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023620.1_2170905_2171370_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023620.1_2171467_2172331_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023620.1_2172368_2173640_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023620.1_2173911_2175027_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023620.1_2175017_2176358_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023620.1_2176394_2176775_-	NA	NA|621aa|down_6|NZ_CP023620.1_2176931_2178794_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023620.1_2178801_2179281_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023620.1_2179517_2180291_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023620.1_2180294_2181062_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	11	3118973-3120327	3,7,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023620.1_3112252_3112507_-,NA|135aa|up_7|NZ_CP023620.1_3112654_3113059_+,NA|64aa|up_6|NZ_CP023620.1_3113055_3113247_+,NA|86aa|up_4|NZ_CP023620.1_3114833_3115091_+,NA|104aa|up_3|NZ_CP023620.1_3115195_3115507_+,NA|203aa|up_2|NZ_CP023620.1_3115926_3116535_+,NA	NA|92aa|up_9|NZ_CP023620.1_3111801_3112077_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023620.1_3112252_3112507_-	NA	NA|135aa|up_7|NZ_CP023620.1_3112654_3113059_+	NA	NA|64aa|up_6|NZ_CP023620.1_3113055_3113247_+	NA	NA|385aa|up_5|NZ_CP023620.1_3113445_3114600_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023620.1_3114833_3115091_+	NA	NA|104aa|up_3|NZ_CP023620.1_3115195_3115507_+	NA	NA|203aa|up_2|NZ_CP023620.1_3115926_3116535_+	NA	NA|470aa|up_1|NZ_CP023620.1_3116605_3118015_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023620.1_3118011_3118824_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023620.1_3120353_3121615_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023620.1_3123412_3123754_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023620.1_3123754_3124771_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023620.1_3124783_3125932_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023620.1_3126027_3127155_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023620.1_3127151_3128060_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023620.1_3128040_3128751_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023620.1_3128760_3129135_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023620.1_3129131_3131570_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023620.1_3131566_3132289_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	12	3121650-3123364	8,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023620.1_3112252_3112507_-,NA|135aa|up_8|NZ_CP023620.1_3112654_3113059_+,NA|64aa|up_7|NZ_CP023620.1_3113055_3113247_+,NA|86aa|up_5|NZ_CP023620.1_3114833_3115091_+,NA|104aa|up_4|NZ_CP023620.1_3115195_3115507_+,NA|203aa|up_3|NZ_CP023620.1_3115926_3116535_+,NA	NA|85aa|up_9|NZ_CP023620.1_3112252_3112507_-	NA	NA|135aa|up_8|NZ_CP023620.1_3112654_3113059_+	NA	NA|64aa|up_7|NZ_CP023620.1_3113055_3113247_+	NA	NA|385aa|up_6|NZ_CP023620.1_3113445_3114600_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023620.1_3114833_3115091_+	NA	NA|104aa|up_4|NZ_CP023620.1_3115195_3115507_+	NA	NA|203aa|up_3|NZ_CP023620.1_3115926_3116535_+	NA	NA|470aa|up_2|NZ_CP023620.1_3116605_3118015_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023620.1_3118011_3118824_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023620.1_3120353_3121615_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023620.1_3123412_3123754_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023620.1_3123754_3124771_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023620.1_3124783_3125932_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023620.1_3126027_3127155_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023620.1_3127151_3128060_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023620.1_3128040_3128751_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023620.1_3128760_3129135_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023620.1_3129131_3131570_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023620.1_3131566_3132289_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023620.1_3132688_3133234_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	13	3740461-3741002	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023620.1_3755103_3755391_-,NA|87aa|down_9|NZ_CP023620.1_3768511_3768772_-	NA|282aa|up_9|NZ_CP023620.1_3719712_3720558_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023620.1_3721032_3721473_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023620.1_3721506_3722376_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023620.1_3722396_3723407_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023620.1_3723691_3724324_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023620.1_3724390_3725620_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023620.1_3725902_3727252_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023620.1_3727263_3728403_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023620.1_3728399_3729131_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023620.1_3729139_3736711_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023620.1_3742973_3743231_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023620.1_3743486_3752960_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023620.1_3753585_3754032_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023620.1_3754068_3754809_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023620.1_3755103_3755391_-	NA	NA|3717aa|down_5|NZ_CP023620.1_3755727_3766878_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023620.1_3767121_3767916_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023620.1_3767997_3768369_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023620.1_3768266_3768485_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023620.1_3768511_3768772_-	NA
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	14	3948062-3949883	5,6	PILER-CR,CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAGCAACAACAGCACCGGCGGCACCGGCGGCACCGGG,CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	37,36	3	9	3948099-3948151|3948723-3948758|3948723-3948758|3948723-3948758|3948723-3948758|3949614-3949640|3949614-3949640|3949614-3949640|3949614-3949640	NZ_CP023620.1_3947143-3947195|NZ_CP023620.1_3946839-3946874|NZ_CP023620.1_3947181-3947216|NZ_CP023620.1_3947772-3947807|NZ_CP023620.1_3932590-3932625|NZ_CP023620.1_361963-361989|NZ_CP023620.1_3941025-3941051|NZ_CP023620.1_3941361-3941387|NZ_CP023620.1_3941707-3941733	NA:NA	2,21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023620.1_3953198_3954038_+	NA|318aa|up_9|NZ_CP023620.1_3920863_3921817_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023620.1_3921841_3922033_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023620.1_3922247_3923450_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023620.1_3923474_3924596_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023620.1_3924666_3926175_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1385aa|up_4|NZ_CP023620.1_3926345_3930500_+	pfam00934, PE, PE family	NA|1896aa|up_3|NZ_CP023620.1_3930790_3936478_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023620.1_3936644_3938192_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023620.1_3938188_3939025_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023620.1_3944859_3945516_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023620.1_3950591_3952238_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023620.1_3952311_3953103_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023620.1_3953198_3954038_+	NA	NA|399aa|down_3|NZ_CP023620.1_3954092_3955289_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023620.1_3955317_3956028_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023620.1_3956092_3957136_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023620.1_3957288_3958200_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023620.1_3958215_3959280_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023620.1_3959296_3960481_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023620.1_3960522_3961554_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002447815.1_ASM244781v1	NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	15	4110441-4110529	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023620.1_4101027_4101798_-,NA|119aa|up_3|NZ_CP023620.1_4106932_4107289_+,NA|52aa|up_2|NZ_CP023620.1_4107388_4107544_+,NA|233aa|up_0|NZ_CP023620.1_4109545_4110244_-,NA|126aa|down_6|NZ_CP023620.1_4115764_4116142_+	NA|288aa|up_9|NZ_CP023620.1_4099409_4100273_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023620.1_4101027_4101798_-	NA	NA|549aa|up_7|NZ_CP023620.1_4101794_4103441_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023620.1_4103437_4104301_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023620.1_4104293_4105220_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023620.1_4105221_4106847_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023620.1_4106932_4107289_+	NA	NA|52aa|up_2|NZ_CP023620.1_4107388_4107544_+	NA	NA|652aa|up_1|NZ_CP023620.1_4107554_4109510_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023620.1_4109545_4110244_-	NA	NA|173aa|down_0|NZ_CP023620.1_4110589_4111108_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023620.1_4111108_4112092_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023620.1_4112084_4113278_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023620.1_4113283_4114105_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023620.1_4114236_4114920_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023620.1_4114919_4115657_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023620.1_4115764_4116142_+	NA	NA|225aa|down_7|NZ_CP023620.1_4116240_4116915_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023620.1_4117020_4117815_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023620.1_4117821_4118277_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
