assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	1	334325-334661	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCCGCCGGCCCCGCCG	16	0	0	NA	NA	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023637.1_333144_333327_-,NA	NA|398aa|up_9|NZ_CP023637.1_323322_324516_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023637.1_324551_326234_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023637.1_326250_328446_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023637.1_328559_329693_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023637.1_329689_330310_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023637.1_330406_330988_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023637.1_330917_331643_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023637.1_331732_332653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023637.1_332692_333121_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023637.1_333144_333327_-	NA	NA|838aa|down_0|NZ_CP023637.1_336544_339058_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023637.1_339348_340959_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023637.1_340982_341891_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023637.1_342114_344010_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023637.1_344006_345623_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023637.1_345619_349612_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023637.1_349608_349917_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023637.1_349919_351461_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023637.1_351509_351803_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023637.1_351832_352123_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	2	335370-335942	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	3	3	335790-335813|335835-335867|335889-335921	NZ_CP023637.1_338571-338594|NZ_CP023637.1_338598-338630|NZ_CP023637.1_338652-338684	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023637.1_333144_333327_-,NA	NA|398aa|up_9|NZ_CP023637.1_323322_324516_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023637.1_324551_326234_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023637.1_326250_328446_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023637.1_328559_329693_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023637.1_329689_330310_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023637.1_330406_330988_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023637.1_330917_331643_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023637.1_331732_332653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023637.1_332692_333121_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023637.1_333144_333327_-	NA	NA|838aa|down_0|NZ_CP023637.1_336544_339058_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023637.1_339348_340959_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023637.1_340982_341891_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023637.1_342114_344010_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023637.1_344006_345623_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023637.1_345619_349612_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023637.1_349608_349917_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023637.1_349919_351461_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023637.1_351509_351803_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023637.1_351832_352123_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	3	338089-338311	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP023637.1_333144_333327_-,NA	NA|561aa|up_9|NZ_CP023637.1_324551_326234_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP023637.1_326250_328446_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP023637.1_328559_329693_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP023637.1_329689_330310_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP023637.1_330406_330988_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP023637.1_330917_331643_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP023637.1_331732_332653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP023637.1_332692_333121_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP023637.1_333144_333327_-	NA	NA|958aa|up_0|NZ_CP023637.1_333421_336295_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP023637.1_339348_340959_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023637.1_340982_341891_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023637.1_342114_344010_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023637.1_344006_345623_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023637.1_345619_349612_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023637.1_349608_349917_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023637.1_349919_351461_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023637.1_351509_351803_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023637.1_351832_352123_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023637.1_352133_353021_+	pfam14011, ESX-1_EspG, EspG family
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	4	366448-367146	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366736-366777|366811-366843	NZ_CP023637.1_374767-374808|NZ_CP023637.1_373582-373614	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023637.1_363460_363763_+,NA|161aa|down_1|NZ_CP023637.1_376556_377039_-,NA|410aa|down_5|NZ_CP023637.1_379155_380385_+	NA|262aa|up_9|NZ_CP023637.1_358155_358941_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023637.1_358929_359733_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023637.1_359742_361140_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023637.1_361318_363094_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023637.1_363236_363464_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023637.1_363460_363763_+	NA	NA|74aa|up_3|NZ_CP023637.1_363810_364032_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023637.1_364028_364454_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023637.1_364589_365222_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023637.1_365218_366127_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023637.1_375897_376569_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023637.1_376556_377039_-	NA	NA|239aa|down_2|NZ_CP023637.1_377096_377813_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023637.1_377914_378571_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023637.1_378640_379132_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023637.1_379155_380385_+	NA	NA|621aa|down_6|NZ_CP023637.1_380539_382402_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023637.1_382473_382860_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023637.1_382862_383525_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023637.1_383585_384470_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	5	691983-692059	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP023637.1_677878_678286_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP023637.1_678345_679032_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP023637.1_679185_681819_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP023637.1_681841_684229_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP023637.1_684366_685089_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP023637.1_685085_685883_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP023637.1_685884_686772_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP023637.1_686777_687992_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP023637.1_689015_690461_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP023637.1_690457_691894_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023637.1_693194_694745_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023637.1_694796_695189_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023637.1_695185_695443_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023637.1_695625_696861_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023637.1_697111_697525_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023637.1_697521_697758_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023637.1_697861_698368_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023637.1_698481_698952_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023637.1_698995_699757_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023637.1_699813_700125_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	6	926577-927524	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGNGCCGGCGGNNCCGGCGG	21	1	3	927360-927395|927360-927395|927360-927395	NZ_CP023637.1_675080-675045|NZ_CP023637.1_1213710-1213745|NZ_CP023637.1_2423749-2423714	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023637.1_931525_932077_-,NA|81aa|down_8|NZ_CP023637.1_937540_937783_+	NA|685aa|up_9|NZ_CP023637.1_914215_916270_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023637.1_916435_917605_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023637.1_917692_918709_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023637.1_918870_919512_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023637.1_919592_920648_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023637.1_920699_921092_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023637.1_921149_921572_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023637.1_921533_921824_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023637.1_921928_922834_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023637.1_922852_923668_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023637.1_927793_930433_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023637.1_930900_931545_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023637.1_931525_932077_-	NA	NA|218aa|down_3|NZ_CP023637.1_932226_932880_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023637.1_932950_933979_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023637.1_934667_935438_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023637.1_935524_936337_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023637.1_936404_937265_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023637.1_937540_937783_+	NA	NA|431aa|down_9|NZ_CP023637.1_938059_939352_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	7	1191277-1191385	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023637.1_1180644_1182276_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023637.1_1182351_1183416_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023637.1_1183468_1183942_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023637.1_1183975_1184839_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023637.1_1184843_1185701_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023637.1_1185701_1186784_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023637.1_1186864_1187284_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023637.1_1187395_1187962_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023637.1_1187958_1188354_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023637.1_1188381_1190385_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023637.1_1192470_1194234_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023637.1_1194230_1195004_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023637.1_1195015_1196053_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023637.1_1196239_1197076_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023637.1_1197191_1198043_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023637.1_1198116_1199334_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023637.1_1199386_1200331_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023637.1_1200553_1201621_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023637.1_1201677_1203072_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023637.1_1203273_1203996_+	pfam06271, RDD, RDD family
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	8	1211911-1212767	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	70	1212294-1212315|1212339-1212354|1212477-1212498|1212477-1212498|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612|1212594-1212612	NZ_CP023637.1_2960507-2960486|NZ_CP023637.1_2088598-2088583|NZ_CP023637.1_837392-837413|NZ_CP023637.1_1217605-1217626|NZ_CP023637.1_674744-674726|NZ_CP023637.1_840454-840472|NZ_CP023637.1_1213437-1213455|NZ_CP023637.1_1217578-1217596|NZ_CP023637.1_1217650-1217668|NZ_CP023637.1_1630669-1630651|NZ_CP023637.1_1633495-1633477|NZ_CP023637.1_1990807-1990789|NZ_CP023637.1_2061526-2061508|NZ_CP023637.1_2061973-2061955|NZ_CP023637.1_2062072-2062054|NZ_CP023637.1_2802056-2802038|NZ_CP023637.1_2805584-2805566|NZ_CP023637.1_150165-150183|NZ_CP023637.1_333767-333749|NZ_CP023637.1_335186-335168|NZ_CP023637.1_337988-337970|NZ_CP023637.1_338384-338366|NZ_CP023637.1_338413-338431|NZ_CP023637.1_338507-338489|NZ_CP023637.1_363038-363020|NZ_CP023637.1_443398-443380|NZ_CP023637.1_546742-546724|NZ_CP023637.1_623935-623953|NZ_CP023637.1_624157-624175|NZ_CP023637.1_673910-673892|NZ_CP023637.1_840175-840193|NZ_CP023637.1_1090939-1090957|NZ_CP023637.1_1091587-1091605|NZ_CP023637.1_1095646-1095628|NZ_CP023637.1_1212966-1212984|NZ_CP023637.1_1213356-1213374|NZ_CP023637.1_1217998-1218016|NZ_CP023637.1_1489176-1489158|NZ_CP023637.1_1618633-1618615|NZ_CP023637.1_1619086-1619068|NZ_CP023637.1_1636008-1635990|NZ_CP023637.1_1636017-1635999|NZ_CP023637.1_1864297-1864279|NZ_CP023637.1_1864825-1864807|NZ_CP023637.1_1990081-1990063|NZ_CP023637.1_2001443-2001461|NZ_CP023637.1_2088796-2088778|NZ_CP023637.1_2303475-2303457|NZ_CP023637.1_2356922-2356904|NZ_CP023637.1_2419575-2419593|NZ_CP023637.1_2423662-2423644|NZ_CP023637.1_2569154-2569136|NZ_CP023637.1_2693449-2693467|NZ_CP023637.1_2795371-2795353|NZ_CP023637.1_2795953-2795935|NZ_CP023637.1_3054544-3054562|NZ_CP023637.1_3054643-3054661|NZ_CP023637.1_3705454-3705472|NZ_CP023637.1_3737432-3737414|NZ_CP023637.1_3738056-3738038|NZ_CP023637.1_3738299-3738281|NZ_CP023637.1_3738432-3738414|NZ_CP023637.1_3802277-3802295|NZ_CP023637.1_3802460-3802478|NZ_CP023637.1_3802628-3802646|NZ_CP023637.1_3930431-3930449|NZ_CP023637.1_3932161-3932179|NZ_CP023637.1_3940668-3940686|NZ_CP023637.1_4031646-4031628|NZ_CP023637.1_4094172-4094190	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023637.1_1207343_1207610_+,NA|61aa|down_3|NZ_CP023637.1_1215185_1215368_+,NA|35aa|down_4|NZ_CP023637.1_1215477_1215582_+	NA|465aa|up_9|NZ_CP023637.1_1201677_1203072_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023637.1_1203273_1203996_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023637.1_1204027_1205194_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023637.1_1205264_1205759_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023637.1_1205944_1206379_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023637.1_1206480_1207347_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023637.1_1207343_1207610_+	NA	NA|674aa|up_2|NZ_CP023637.1_1207596_1209618_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023637.1_1209716_1210445_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023637.1_1210555_1211344_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023637.1_1214000_1214321_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023637.1_1214473_1214908_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP023637.1_1215009_1215174_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023637.1_1215185_1215368_+	NA	NA|35aa|down_4|NZ_CP023637.1_1215477_1215582_+	NA	NA|152aa|down_5|NZ_CP023637.1_1215559_1216015_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023637.1_1216429_1218991_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023637.1_1219208_1220147_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023637.1_1220534_1221815_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023637.1_1221919_1222747_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	9	1572151-1573223	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023637.1_1563914_1564232_+,NA	NA|103aa|up_9|NZ_CP023637.1_1561429_1561738_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023637.1_1561734_1563354_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023637.1_1563914_1564232_+	NA	NA|209aa|up_6|NZ_CP023637.1_1564366_1564993_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023637.1_1565058_1565391_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023637.1_1565406_1566663_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023637.1_1566790_1568002_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023637.1_1568074_1569553_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023637.1_1569549_1570935_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023637.1_1571012_1572047_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023637.1_1574077_1574479_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023637.1_1574475_1574733_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023637.1_1574815_1575775_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023637.1_1575799_1576762_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023637.1_1576895_1577498_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023637.1_1577578_1579546_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023637.1_1579563_1580388_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023637.1_1580556_1581039_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023637.1_1581110_1581935_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023637.1_1582131_1583070_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	10	1636872-1637060	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGGCCCCGCCGGC	18	1	2	1636971-1636988|1636971-1636988	NZ_CP023637.1_2801963-2801980|NZ_CP023637.1_3766661-3766678	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP023637.1_1623094_1623208_-,NA|137aa|up_7|NZ_CP023637.1_1623257_1623668_-,NA|288aa|down_2|NZ_CP023637.1_1640650_1641514_+	NA|162aa|up_9|NZ_CP023637.1_1622177_1622663_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP023637.1_1623094_1623208_-	NA	NA|137aa|up_7|NZ_CP023637.1_1623257_1623668_-	NA	NA|248aa|up_6|NZ_CP023637.1_1623684_1624428_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP023637.1_1624424_1625336_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP023637.1_1625388_1626933_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP023637.1_1626929_1628051_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP023637.1_1628067_1630170_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP023637.1_1630608_1634598_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP023637.1_1634999_1635926_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023637.1_1638351_1639617_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023637.1_1639644_1640631_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023637.1_1640650_1641514_+	NA	NA|311aa|down_3|NZ_CP023637.1_1641463_1642396_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023637.1_1642507_1643293_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023637.1_1643289_1644231_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023637.1_1644333_1646109_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023637.1_1646156_1646963_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023637.1_1646959_1649500_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023637.1_1649496_1650690_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	11	2088268-2088522	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088349-2088366|2088349-2088366|2088439-2088456	NZ_CP023637.1_401063-401046|NZ_CP023637.1_607390-607373|NZ_CP023637.1_3450149-3450132	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023637.1_2087627_2087891_-,NA	NA|165aa|up_9|NZ_CP023637.1_2073921_2074416_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023637.1_2074819_2075497_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023637.1_2075855_2078681_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023637.1_2078907_2079768_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023637.1_2079808_2080675_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023637.1_2080679_2082566_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023637.1_2082581_2084615_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023637.1_2084734_2086960_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023637.1_2087235_2087631_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023637.1_2087627_2087891_-	NA	NA|346aa|down_0|NZ_CP023637.1_2089659_2090697_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023637.1_2090696_2092064_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023637.1_2092237_2093674_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023637.1_2093709_2095161_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023637.1_2095190_2096141_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023637.1_2096155_2096572_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023637.1_2096849_2097272_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023637.1_2097320_2097623_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023637.1_2097619_2097934_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023637.1_2097933_2099667_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	12	2163361-2163465	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023637.1_2152408_2152879_-,NA|136aa|up_1|NZ_CP023637.1_2159904_2160312_-,NA|127aa|down_6|NZ_CP023637.1_2176534_2176915_-	NA|157aa|up_9|NZ_CP023637.1_2152408_2152879_-	NA	NA|216aa|up_8|NZ_CP023637.1_2153218_2153866_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023637.1_2153872_2156095_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023637.1_2156132_2156576_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023637.1_2156689_2157283_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023637.1_2157365_2157971_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023637.1_2158070_2159075_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023637.1_2159174_2159927_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023637.1_2159904_2160312_-	NA	NA|767aa|up_0|NZ_CP023637.1_2160446_2162747_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023637.1_2167633_2170597_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023637.1_2171045_2171510_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023637.1_2171607_2172471_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023637.1_2172508_2173780_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023637.1_2174051_2175167_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023637.1_2175157_2176498_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023637.1_2176534_2176915_-	NA	NA|621aa|down_7|NZ_CP023637.1_2177071_2178934_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023637.1_2178941_2179421_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023637.1_2179657_2180431_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	13	2168799-2169018	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023637.1_2159904_2160312_-,NA|127aa|down_5|NZ_CP023637.1_2176534_2176915_-	NA|216aa|up_9|NZ_CP023637.1_2153218_2153866_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023637.1_2153872_2156095_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023637.1_2156132_2156576_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023637.1_2156689_2157283_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023637.1_2157365_2157971_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023637.1_2158070_2159075_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023637.1_2159174_2159927_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023637.1_2159904_2160312_-	NA	NA|767aa|up_1|NZ_CP023637.1_2160446_2162747_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023637.1_2162916_2167296_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023637.1_2171045_2171510_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023637.1_2171607_2172471_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023637.1_2172508_2173780_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023637.1_2174051_2175167_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023637.1_2175157_2176498_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023637.1_2176534_2176915_-	NA	NA|621aa|down_6|NZ_CP023637.1_2177071_2178934_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023637.1_2178941_2179421_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023637.1_2179657_2180431_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP023637.1_2181224_2181869_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	14	3119135-3120489	3,8,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023637.1_3112414_3112669_-,NA|135aa|up_7|NZ_CP023637.1_3112816_3113221_+,NA|64aa|up_6|NZ_CP023637.1_3113217_3113409_+,NA|86aa|up_4|NZ_CP023637.1_3114995_3115253_+,NA|104aa|up_3|NZ_CP023637.1_3115357_3115669_+,NA|203aa|up_2|NZ_CP023637.1_3116088_3116697_+,NA	NA|92aa|up_9|NZ_CP023637.1_3111963_3112239_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023637.1_3112414_3112669_-	NA	NA|135aa|up_7|NZ_CP023637.1_3112816_3113221_+	NA	NA|64aa|up_6|NZ_CP023637.1_3113217_3113409_+	NA	NA|385aa|up_5|NZ_CP023637.1_3113607_3114762_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023637.1_3114995_3115253_+	NA	NA|104aa|up_3|NZ_CP023637.1_3115357_3115669_+	NA	NA|203aa|up_2|NZ_CP023637.1_3116088_3116697_+	NA	NA|470aa|up_1|NZ_CP023637.1_3116767_3118177_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023637.1_3118173_3118986_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023637.1_3120515_3121777_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023637.1_3123574_3123916_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023637.1_3123916_3124933_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023637.1_3124945_3126094_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023637.1_3126189_3127317_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023637.1_3127313_3128222_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023637.1_3128202_3128913_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023637.1_3128922_3129297_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_8|NZ_CP023637.1_3129293_3131723_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023637.1_3131719_3132442_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	15	3121812-3123526	9,6,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGA	36,36,35	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023637.1_3112414_3112669_-,NA|135aa|up_8|NZ_CP023637.1_3112816_3113221_+,NA|64aa|up_7|NZ_CP023637.1_3113217_3113409_+,NA|86aa|up_5|NZ_CP023637.1_3114995_3115253_+,NA|104aa|up_4|NZ_CP023637.1_3115357_3115669_+,NA|203aa|up_3|NZ_CP023637.1_3116088_3116697_+,NA	NA|85aa|up_9|NZ_CP023637.1_3112414_3112669_-	NA	NA|135aa|up_8|NZ_CP023637.1_3112816_3113221_+	NA	NA|64aa|up_7|NZ_CP023637.1_3113217_3113409_+	NA	NA|385aa|up_6|NZ_CP023637.1_3113607_3114762_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023637.1_3114995_3115253_+	NA	NA|104aa|up_4|NZ_CP023637.1_3115357_3115669_+	NA	NA|203aa|up_3|NZ_CP023637.1_3116088_3116697_+	NA	NA|470aa|up_2|NZ_CP023637.1_3116767_3118177_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023637.1_3118173_3118986_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023637.1_3120515_3121777_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023637.1_3123574_3123916_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023637.1_3123916_3124933_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023637.1_3124945_3126094_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023637.1_3126189_3127317_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023637.1_3127313_3128222_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023637.1_3128202_3128913_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023637.1_3128922_3129297_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_7|NZ_CP023637.1_3129293_3131723_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023637.1_3131719_3132442_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023637.1_3132841_3133387_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	16	3740626-3741167	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023637.1_3755250_3755538_-,NA|87aa|down_9|NZ_CP023637.1_3768658_3768919_-	NA|282aa|up_9|NZ_CP023637.1_3719877_3720723_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023637.1_3721197_3721638_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023637.1_3721671_3722541_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023637.1_3722561_3723572_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023637.1_3723856_3724489_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023637.1_3724555_3725785_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023637.1_3726067_3727417_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023637.1_3727428_3728568_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023637.1_3728564_3729296_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023637.1_3729304_3736876_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023637.1_3743120_3743378_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023637.1_3743633_3753107_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023637.1_3753732_3754179_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023637.1_3754215_3754956_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023637.1_3755250_3755538_-	NA	NA|3717aa|down_5|NZ_CP023637.1_3755874_3767025_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023637.1_3767268_3768063_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023637.1_3768144_3768516_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023637.1_3768413_3768632_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023637.1_3768658_3768919_-	NA
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	17	3762406-3762532	5	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_0|NZ_CP023637.1_3755250_3755538_-,NA|87aa|down_3|NZ_CP023637.1_3768658_3768919_-	NA|410aa|up_9|NZ_CP023637.1_3724555_3725785_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_8|NZ_CP023637.1_3726067_3727417_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_7|NZ_CP023637.1_3727428_3728568_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_6|NZ_CP023637.1_3728564_3729296_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_5|NZ_CP023637.1_3729304_3736876_-	pfam00823, PPE, PPE family	NA|86aa|up_4|NZ_CP023637.1_3743120_3743378_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|up_3|NZ_CP023637.1_3743633_3753107_-	pfam00823, PPE, PPE family	NA|149aa|up_2|NZ_CP023637.1_3753732_3754179_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|up_1|NZ_CP023637.1_3754215_3754956_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_0|NZ_CP023637.1_3755250_3755538_-	NA	NA|265aa|down_0|NZ_CP023637.1_3767268_3768063_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_1|NZ_CP023637.1_3768144_3768516_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_2|NZ_CP023637.1_3768413_3768632_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_3|NZ_CP023637.1_3768658_3768919_-	NA	NA|130aa|down_4|NZ_CP023637.1_3769033_3769423_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_5|NZ_CP023637.1_3769436_3769730_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_6|NZ_CP023637.1_3769726_3770572_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_7|NZ_CP023637.1_3770695_3770971_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_8|NZ_CP023637.1_3770967_3771225_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_9|NZ_CP023637.1_3771266_3772457_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	18	3948276-3950027	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948867-3948902|3948867-3948902|3948867-3948902|3948867-3948902|3948867-3948902|3949758-3949784|3949758-3949784|3949758-3949784|3949758-3949784	NZ_CP023637.1_3946983-3947018|NZ_CP023637.1_3947325-3947360|NZ_CP023637.1_3947916-3947951|NZ_CP023637.1_3948267-3948302|NZ_CP023637.1_3932716-3932751|NZ_CP023637.1_361978-362004|NZ_CP023637.1_3941169-3941195|NZ_CP023637.1_3941505-3941531|NZ_CP023637.1_3941851-3941877	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023637.1_3953342_3954182_+	NA|318aa|up_9|NZ_CP023637.1_3921007_3921961_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023637.1_3921985_3922177_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023637.1_3922391_3923594_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023637.1_3923618_3924740_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023637.1_3924810_3926319_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1379aa|up_4|NZ_CP023637.1_3926489_3930626_+	pfam00934, PE, PE family	NA|1902aa|up_3|NZ_CP023637.1_3930916_3936622_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023637.1_3936788_3938336_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023637.1_3938332_3939169_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023637.1_3945003_3945660_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023637.1_3950735_3952382_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023637.1_3952455_3953247_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023637.1_3953342_3954182_+	NA	NA|399aa|down_3|NZ_CP023637.1_3954236_3955433_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023637.1_3955461_3956172_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023637.1_3956236_3957280_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023637.1_3957432_3958344_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023637.1_3958359_3959424_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_8|NZ_CP023637.1_3960666_3961698_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NZ_CP023637.1_3961711_3962236_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_002448155.1_ASM244815v1	NZ_CP023637	Mycobacterium tuberculosis strain TBDM2717 chromosome, complete genome	19	4110589-4110677	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023637.1_4101175_4101946_-,NA|119aa|up_3|NZ_CP023637.1_4107080_4107437_+,NA|52aa|up_2|NZ_CP023637.1_4107536_4107692_+,NA|233aa|up_0|NZ_CP023637.1_4109693_4110392_-,NA|126aa|down_6|NZ_CP023637.1_4115912_4116290_+	NA|288aa|up_9|NZ_CP023637.1_4099557_4100421_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023637.1_4101175_4101946_-	NA	NA|549aa|up_7|NZ_CP023637.1_4101942_4103589_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023637.1_4103585_4104449_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023637.1_4104441_4105368_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023637.1_4105369_4106995_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023637.1_4107080_4107437_+	NA	NA|52aa|up_2|NZ_CP023637.1_4107536_4107692_+	NA	NA|652aa|up_1|NZ_CP023637.1_4107702_4109658_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023637.1_4109693_4110392_-	NA	NA|173aa|down_0|NZ_CP023637.1_4110737_4111256_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023637.1_4111256_4112240_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023637.1_4112232_4113426_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023637.1_4113431_4114253_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023637.1_4114384_4115068_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023637.1_4115067_4115805_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023637.1_4115912_4116290_+	NA	NA|225aa|down_7|NZ_CP023637.1_4116388_4117063_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023637.1_4117166_4117961_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023637.1_4117967_4118423_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
