assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002504105.1_ASM250410v1	NZ_CP022663	Salmonella enterica subsp. enterica strain RM11065 chromosome, complete genome	1	535924-536011	1	CRISPRCasFinder	no		DEDDh,DinG,cas14j,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	TCTTATCCGGCCTACGGGCGAGTACTGTTT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|1121aa|up_9|NZ_CP022663.1_524623_527986_+	PRK11281, PRK11281, mechanosensitive channel MscK	NA|308aa|up_8|NZ_CP022663.1_528027_528951_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|52aa|up_7|NZ_CP022663.1_529032_529188_-	PRK11038, PRK11038, hypothetical protein; Provisional	NA|172aa|up_6|NZ_CP022663.1_529201_529717_-	PRK10093, PRK10093, primosomal replication protein N''; Provisional	NA|126aa|up_5|NZ_CP022663.1_529797_530175_+	PRK10527, PRK10527, DUF454 family protein	NA|184aa|up_4|NZ_CP022663.1_530327_530879_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|643aa|up_3|NZ_CP022663.1_530992_532921_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|110aa|up_2|NZ_CP022663.1_532966_533296_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|202aa|up_1|NZ_CP022663.1_533295_533901_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|625aa|up_0|NZ_CP022663.1_534011_535886_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|215aa|down_0|NZ_CP022663.1_536185_536830_+	PRK00279, adk, adenylate kinase; Reviewed	NA|321aa|down_1|NZ_CP022663.1_537014_537977_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|324aa|down_2|NZ_CP022663.1_537973_538945_-	PRK10162, PRK10162, acetyl esterase	NA|435aa|down_3|NZ_CP022663.1_539097_540402_+	PRK15074, PRK15074, inosine/guanosine kinase; Provisional	NA|559aa|down_4|NZ_CP022663.1_540450_542127_-	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|407aa|down_5|NZ_CP022663.1_542341_543562_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|551aa|down_6|NZ_CP022663.1_543734_545387_+	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	NA|160aa|down_7|NZ_CP022663.1_545503_545983_-	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA|265aa|down_8|NZ_CP022663.1_546184_546979_-	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown]	NA|279aa|down_9|NZ_CP022663.1_547055_547892_-	pfam07007, LprI, Lysozyme inhibitor LprI
GCF_002504105.1_ASM250410v1	NZ_CP022663	Salmonella enterica subsp. enterica strain RM11065 chromosome, complete genome	2	954117-954199	2	CRISPRCasFinder	no	cas14j	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Unclear	TTTTCGCGAAGTCGTTCGATCTCCGCCGC	29	0	0	NA	NA	NA	1	1	TypeV	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA|50aa|up_1|NZ_CP022663.1_953547_953697_-,NA|62aa|up_0|NZ_CP022663.1_953693_953879_-,NA|75aa|down_0|NZ_CP022663.1_954375_954600_-,NA|132aa|down_3|NZ_CP022663.1_956019_956415_-,NA|79aa|down_4|NZ_CP022663.1_956404_956641_-,NA|126aa|down_5|NZ_CP022663.1_956640_957018_-,NA|70aa|down_6|NZ_CP022663.1_956980_957190_-,NA|62aa|down_7|NZ_CP022663.1_957377_957563_-,NA|65aa|down_8|NZ_CP022663.1_957559_957754_-,NA|106aa|down_9|NZ_CP022663.1_957746_958064_-	NA|244aa|up_9|NZ_CP022663.1_947270_948002_-	cd13700, PBP2_Arg_STM4351, Substrate binding domain of arginine-specific ABC transporter; type 2 periplasmic-binding protein fold	NA|223aa|up_8|NZ_CP022663.1_948238_948907_-	PRK11122, artM, arginine ABC transporter permease ArtM	NA|239aa|up_7|NZ_CP022663.1_948906_949623_-	PRK11123, PRK11123, arginine ABC transporter permease ArtQ	NA|244aa|up_6|NZ_CP022663.1_949629_950361_-	PRK15007, PRK15007, arginine ABC transporter substrate-binding protein	NA|243aa|up_5|NZ_CP022663.1_950378_951107_-	PRK11124, artP, arginine transporter ATP-binding subunit; Provisional	NA|172aa|up_4|NZ_CP022663.1_951335_951851_-	PRK10533, PRK10533, putative lipoprotein; Provisional	NA|442aa|up_3|NZ_CP022663.1_951946_953272_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|81aa|up_2|NZ_CP022663.1_953297_953540_-	pfam06806, DUF1233, Putative excisionase (DUF1233)	NA|50aa|up_1|NZ_CP022663.1_953547_953697_-	NA	NA|62aa|up_0|NZ_CP022663.1_953693_953879_-	NA	NA|75aa|down_0|NZ_CP022663.1_954375_954600_-	NA	NA|189aa|down_1|NZ_CP022663.1_954596_955163_-	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|302aa|down_2|NZ_CP022663.1_955159_956065_-	pfam10543, ORF6N, ORF6N domain	NA|132aa|down_3|NZ_CP022663.1_956019_956415_-	NA	NA|79aa|down_4|NZ_CP022663.1_956404_956641_-	NA	NA|126aa|down_5|NZ_CP022663.1_956640_957018_-	NA	NA|70aa|down_6|NZ_CP022663.1_956980_957190_-	NA	NA|62aa|down_7|NZ_CP022663.1_957377_957563_-	NA	NA|65aa|down_8|NZ_CP022663.1_957559_957754_-	NA	NA|106aa|down_9|NZ_CP022663.1_957746_958064_-	NA
GCF_002504105.1_ASM250410v1	NZ_CP022663	Salmonella enterica subsp. enterica strain RM11065 chromosome, complete genome	3	1504307-1504416	3	CRISPRCasFinder	no		DEDDh,DinG,cas14j,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	GCCGCTTCCACTGCGGCTTTACGCGG	26	1	1	1504333-1504390	NZ_CP022663.1_1504426-1504483	NA	1	1	Orphan	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|110aa|up_9|NZ_CP022663.1_1494808_1495138_+	PRK11372, PRK11372, C-type lysozyme inhibitor	NA|219aa|up_8|NZ_CP022663.1_1495196_1495853_+	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|425aa|up_7|NZ_CP022663.1_1495979_1497254_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|287aa|up_6|NZ_CP022663.1_1497313_1498174_+	PRK05756, PRK05756, pyridoxal kinase PdxY	NA|202aa|up_5|NZ_CP022663.1_1498232_1498838_-	PRK10542, PRK10542, glutathionine S-transferase; Provisional	NA|502aa|up_4|NZ_CP022663.1_1498942_1500448_-	PRK09584, tppB, dipeptide/tripeptide permease DtpA	NA|212aa|up_3|NZ_CP022663.1_1501049_1501685_-	PRK10702, PRK10702, endonuclease III; Provisional	NA|231aa|up_2|NZ_CP022663.1_1501684_1502377_-	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|207aa|up_1|NZ_CP022663.1_1502379_1503000_-	PRK01908, PRK01908, electron transport complex protein RnfG; Validated	NA|353aa|up_0|NZ_CP022663.1_1503003_1504062_-	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|193aa|down_0|NZ_CP022663.1_1506253_1506832_-	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|194aa|down_1|NZ_CP022663.1_1506831_1507413_-	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|147aa|down_2|NZ_CP022663.1_1507489_1507930_-	pfam10754, DUF2569, Protein of unknown function (DUF2569)	NA|72aa|down_3|NZ_CP022663.1_1508018_1508234_-	PRK10391, PRK10391, transcription modulator YdgT	NA|52aa|down_4|NZ_CP022663.1_1508530_1508686_-	NF033231, small_Blr, division septum protein Blr	NA|372aa|down_5|NZ_CP022663.1_1508788_1509904_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|334aa|down_6|NZ_CP022663.1_1509978_1510980_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|391aa|down_7|NZ_CP022663.1_1511193_1512366_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|531aa|down_8|NZ_CP022663.1_1512375_1513968_-	PRK10110, PRK10110, PTS maltose transporter subunit IICB	NA|343aa|down_9|NZ_CP022663.1_1514140_1515169_+	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional
GCF_002504105.1_ASM250410v1	NZ_CP022663	Salmonella enterica subsp. enterica strain RM11065 chromosome, complete genome	4	3170393-3170848	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|389aa|up_9|NZ_CP022663.1_3161672_3162839_-	PRK09692, PRK09692, integrase; Provisional	NA|350aa|up_8|NZ_CP022663.1_3163004_3164054_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP022663.1_3164050_3164530_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP022663.1_3164529_3165240_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|103aa|up_5|NZ_CP022663.1_3165258_3165567_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP022663.1_3165757_3166114_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP022663.1_3166131_3166737_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP022663.1_3166723_3168163_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP022663.1_3168172_3169081_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP022663.1_3169331_3170378_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP022663.1_3170932_3171226_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas6e|236aa|down_1|NZ_CP022663.1_3172142_3172850_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_2|NZ_CP022663.1_3172849_3173575_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|355aa|down_3|NZ_CP022663.1_3173584_3174649_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_4|NZ_CP022663.1_3174665_3175268_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_5|NZ_CP022663.1_3175284_3176820_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_6|NZ_CP022663.1_3177381_3180081_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|down_7|NZ_CP022663.1_3180464_3181418_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_8|NZ_CP022663.1_3181505_3182240_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP022663.1_3182315_3184028_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_002504105.1_ASM250410v1	NZ_CP022663	Salmonella enterica subsp. enterica strain RM11065 chromosome, complete genome	5	3187610-3188248	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,9	10	TypeI-E	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	cas7|355aa|up_9|NZ_CP022663.1_3173584_3174649_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|up_8|NZ_CP022663.1_3174665_3175268_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|up_7|NZ_CP022663.1_3175284_3176820_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|NZ_CP022663.1_3177381_3180081_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|up_5|NZ_CP022663.1_3180464_3181418_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP022663.1_3181505_3182240_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP022663.1_3182315_3184028_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP022663.1_3184027_3185827_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP022663.1_3186262_3186625_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP022663.1_3186714_3187512_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP022663.1_3188544_3189216_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP022663.1_3189351_3190650_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP022663.1_3190732_3192370_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP022663.1_3192597_3193398_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP022663.1_3194165_3194462_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP022663.1_3194427_3194784_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP022663.1_3194868_3197103_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|919aa|down_7|NZ_CP022663.1_3198507_3201264_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_8|NZ_CP022663.1_3201307_3202450_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|447aa|down_9|NZ_CP022663.1_3202527_3203868_-	TIGR03247, glucar-dehydr, glucarate dehydratase
