assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	1	320422-320524	1	CRISPRCasFinder	no		WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	Orphan	GTTGTTTTTACCCTTCAAAATTAGAGCAGTCACAACG	37	0	0	NA	NA	VI-B2	1	1	Orphan	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA|316aa|up_6|NZ_CP023777.1_306622_307570_-,NA|255aa|down_1|NZ_CP023777.1_322297_323062_+,NA|473aa|down_3|NZ_CP023777.1_324071_325490_-,NA|79aa|down_4|NZ_CP023777.1_325582_325819_-	NA|368aa|up_9|NZ_CP023777.1_303972_305076_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|283aa|up_8|NZ_CP023777.1_305108_305957_-	pfam02548, Pantoate_transf, Ketopantoate hydroxymethyltransferase	NA|151aa|up_7|NZ_CP023777.1_306077_306530_-	pfam02622, DUF179, Uncharacterized ACR, COG1678	NA|316aa|up_6|NZ_CP023777.1_306622_307570_-	NA	NA|601aa|up_5|NZ_CP023777.1_307601_309404_-	pfam07980, SusD_RagB, SusD family	NA|1033aa|up_4|NZ_CP023777.1_309459_312558_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|189aa|up_3|NZ_CP023777.1_312659_313226_-	pfam00754, F5_F8_type_C, F5/8 type C domain	NA|473aa|up_2|NZ_CP023777.1_313918_315337_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|1058aa|up_1|NZ_CP023777.1_315423_318597_-	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41	NA|442aa|up_0|NZ_CP023777.1_318899_320225_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|365aa|down_0|NZ_CP023777.1_320878_321974_-	pfam13683, rve_3, Integrase core domain	NA|255aa|down_1|NZ_CP023777.1_322297_323062_+	NA	NA|253aa|down_2|NZ_CP023777.1_323102_323861_+	pfam11185, DUF2971, Protein of unknown function (DUF2971)	NA|473aa|down_3|NZ_CP023777.1_324071_325490_-	NA	NA|79aa|down_4|NZ_CP023777.1_325582_325819_-	NA	NA|340aa|down_5|NZ_CP023777.1_325884_326904_-	pfam18739, HEPN_Apea, Apea-like HEPN	NA|463aa|down_6|NZ_CP023777.1_327136_328525_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|279aa|down_7|NZ_CP023777.1_328636_329473_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|196aa|down_8|NZ_CP023777.1_329515_330103_-	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR	NA|218aa|down_9|NZ_CP023777.1_330159_330813_-	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	2	651441-651538	2	CRISPRCasFinder	no		WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	Orphan	CCACGGTTGTAGCCGCGGTCACGGTC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA|116aa|up_9|NZ_CP023777.1_640680_641028_-,NA|188aa|up_1|NZ_CP023777.1_650002_650566_+,NA	NA|116aa|up_9|NZ_CP023777.1_640680_641028_-	NA	NA|741aa|up_8|NZ_CP023777.1_641228_643451_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|618aa|up_7|NZ_CP023777.1_643836_645690_-	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|106aa|up_6|NZ_CP023777.1_646235_646553_+	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|243aa|up_5|NZ_CP023777.1_646973_647702_+	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|204aa|up_4|NZ_CP023777.1_647710_648322_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|335aa|up_3|NZ_CP023777.1_648375_649380_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|105aa|up_2|NZ_CP023777.1_649406_649721_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|188aa|up_1|NZ_CP023777.1_650002_650566_+	NA	NA|182aa|up_0|NZ_CP023777.1_650653_651199_-	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily	NA|427aa|down_0|NZ_CP023777.1_651824_653105_-	TIGR01814, kynureninase, kynureninase	NA|263aa|down_1|NZ_CP023777.1_653342_654131_-	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|1181aa|down_2|NZ_CP023777.1_654641_658184_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|370aa|down_3|NZ_CP023777.1_658229_659339_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|458aa|down_4|NZ_CP023777.1_659369_660743_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|203aa|down_5|NZ_CP023777.1_660758_661367_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|212aa|down_6|NZ_CP023777.1_661671_662307_+	COG2928, COG2928, Uncharacterized conserved protein [Function unknown]	NA|326aa|down_7|NZ_CP023777.1_662386_663364_+	cd10981, ZnPC_S1P1, Zinc dependent phospholipase C/S1-P1 nuclease	NA|357aa|down_8|NZ_CP023777.1_663514_664585_+	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|407aa|down_9|NZ_CP023777.1_664724_665945_+	pfam06245, DUF1015, Protein of unknown function (DUF1015)
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	3	972627-972729	3	CRISPRCasFinder	no		WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	Orphan	CCTTAAGATGTTTTATCGCGGATGTTGTTTT	31	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA|155aa|up_8|NZ_CP023777.1_951141_951606_+,NA|863aa|up_4|NZ_CP023777.1_966421_969010_+,NA|414aa|down_3|NZ_CP023777.1_977828_979070_-,NA|299aa|down_4|NZ_CP023777.1_979059_979956_-	NA|471aa|up_9|NZ_CP023777.1_949240_950653_-	cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|155aa|up_8|NZ_CP023777.1_951141_951606_+	NA	NA|688aa|up_7|NZ_CP023777.1_951877_953941_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|337aa|up_6|NZ_CP023777.1_953947_954958_-	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family	NA|3548aa|up_5|NZ_CP023777.1_955048_965692_-	pfam13585, CHU_C, C-terminal domain of CHU protein family	NA|863aa|up_4|NZ_CP023777.1_966421_969010_+	NA	NA|303aa|up_3|NZ_CP023777.1_969550_970459_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|157aa|up_2|NZ_CP023777.1_970496_970967_+	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|150aa|up_1|NZ_CP023777.1_971026_971476_-	pfam07606, DUF1569, Protein of unknown function (DUF1569)	NA|251aa|up_0|NZ_CP023777.1_971748_972501_+	PRK06172, PRK06172, SDR family oxidoreductase	NA|720aa|down_0|NZ_CP023777.1_972871_975031_+	pfam02065, Melibiase, Melibiase	NA|448aa|down_1|NZ_CP023777.1_975492_976836_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|327aa|down_2|NZ_CP023777.1_976844_977825_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|414aa|down_3|NZ_CP023777.1_977828_979070_-	NA	NA|299aa|down_4|NZ_CP023777.1_979059_979956_-	NA	NA|328aa|down_5|NZ_CP023777.1_979975_980959_-	pfam01944, SpoIIM, Stage II sporulation protein M	NA|268aa|down_6|NZ_CP023777.1_981031_981835_+	pfam06271, RDD, RDD family	NA|152aa|down_7|NZ_CP023777.1_981853_982309_-	pfam06271, RDD, RDD family	NA|137aa|down_8|NZ_CP023777.1_983105_983516_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|205aa|down_9|NZ_CP023777.1_983651_984266_+	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	4	1224863-1224996	4	CRISPRCasFinder	no		WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	Orphan	TTTTTCACCAAATCATTTAATGCTTCAAAATCCTCCAAAAACTTAGA	47	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA|101aa|up_6|NZ_CP023777.1_1216445_1216748_+,NA|298aa|down_5|NZ_CP023777.1_1230147_1231041_-	NA|710aa|up_9|NZ_CP023777.1_1211575_1213705_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|614aa|up_8|NZ_CP023777.1_1213888_1215730_-	pfam04024, PspC, PspC domain	NA|112aa|up_7|NZ_CP023777.1_1215772_1216108_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|101aa|up_6|NZ_CP023777.1_1216445_1216748_+	NA	NA|545aa|up_5|NZ_CP023777.1_1217025_1218660_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|223aa|up_4|NZ_CP023777.1_1218681_1219350_+	PRK15219, PRK15219, carbonic anhydrase; Provisional	NA|364aa|up_3|NZ_CP023777.1_1219407_1220499_-	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]	NA|321aa|up_2|NZ_CP023777.1_1220504_1221467_-	PRK10892, PRK10892, arabinose-5-phosphate isomerase KdsD	NA|734aa|up_1|NZ_CP023777.1_1221655_1223857_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|258aa|up_0|NZ_CP023777.1_1223870_1224644_+	pfam11251, DUF3050, Protein of unknown function (DUF3050)	NA|173aa|down_0|NZ_CP023777.1_1225125_1225644_+	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown]	NA|224aa|down_1|NZ_CP023777.1_1225647_1226319_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|433aa|down_2|NZ_CP023777.1_1226431_1227730_+	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|518aa|down_3|NZ_CP023777.1_1227738_1229292_-	PRK09776, PRK09776, putative diguanylate cyclase; Provisional	NA|121aa|down_4|NZ_CP023777.1_1229686_1230049_-	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|298aa|down_5|NZ_CP023777.1_1230147_1231041_-	NA	NA|179aa|down_6|NZ_CP023777.1_1231307_1231844_+	pfam03653, UPF0093, Uncharacterized protein family (UPF0093)	NA|454aa|down_7|NZ_CP023777.1_1231836_1233198_-	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|623aa|down_8|NZ_CP023777.1_1233562_1235431_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|141aa|down_9|NZ_CP023777.1_1235589_1236012_-	TIGR00043, Endoribonuclease_YbeY, rRNA maturation RNase YbeY
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	5	1725909-1726646	1,5	PILER-CR,CRISPRCasFinder	no	cas9,cas1,cas2	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	 Type II-B,Type II-A, or Type II-C?,Type II-B,Type II-C	GTTGTGTTAGCACTAAGCTACAGAAAAATTTGAAAGCAAATCACAAC,GTTGTGTTAGCACTAAGCTACAGAAAAATTTGAAAGCAAATCACAAC	47,47	0	0	NA	NA	NA:NA	8,9	9	TypeII-B,TypeII-A,orTypeII-C?,TypeII-C,TypeII-B	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA,NA|165aa|down_3|NZ_CP023777.1_1730542_1731037_+,NA|79aa|down_6|NZ_CP023777.1_1732782_1733019_+	NA|195aa|up_9|NZ_CP023777.1_1713746_1714331_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|138aa|up_8|NZ_CP023777.1_1714395_1714809_+	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily	NA|287aa|up_7|NZ_CP023777.1_1714950_1715811_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|311aa|up_6|NZ_CP023777.1_1715898_1716831_+	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|132aa|up_5|NZ_CP023777.1_1716877_1717273_+	pfam07681, DoxX, DoxX	NA|224aa|up_4|NZ_CP023777.1_1717450_1718122_+	cd06561, AlkD_like, A new structural DNA glycosylase	NA|579aa|up_3|NZ_CP023777.1_1718124_1719861_-	cd07563, Peptidase_S41_IRBP, Interphotoreceptor retinoid-binding protein; serine protease family S41	cas9|1411aa|up_2|NZ_CP023777.1_1720327_1724560_+	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	cas1|299aa|up_1|NZ_CP023777.1_1724572_1725469_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|112aa|up_0|NZ_CP023777.1_1725482_1725818_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|106aa|down_0|NZ_CP023777.1_1726692_1727010_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|310aa|down_1|NZ_CP023777.1_1726937_1727867_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|93aa|down_2|NZ_CP023777.1_1729893_1730172_+	pfam14338, Mrr_N, Mrr N-terminal domain	NA|165aa|down_3|NZ_CP023777.1_1730542_1731037_+	NA	NA|113aa|down_4|NZ_CP023777.1_1731727_1732066_+	pfam01381, HTH_3, Helix-turn-helix	NA|248aa|down_5|NZ_CP023777.1_1732058_1732802_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|79aa|down_6|NZ_CP023777.1_1732782_1733019_+	NA	NA|108aa|down_7|NZ_CP023777.1_1733067_1733391_+	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|193aa|down_8|NZ_CP023777.1_1733539_1734118_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|385aa|down_9|NZ_CP023777.1_1734194_1735349_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	6	1727943-1729523	6,2	CRISPRCasFinder,PILER-CR	no	cas9,cas1,cas2	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	 Type II-B,Type II-A, or Type II-C?,Type II-B,Type II-C	GTTGTGTTAGCACTAAGCTACAGAAAAATTTGAAAGCAAATCACAAC,GTTGTGTTAGCACTAAGCTACAGAAAAATTTGAAAGCAAATCACAAC	47,47	0	0	NA	NA	NA:NA	19,18	19	TypeII-B,TypeII-A,orTypeII-C?,TypeII-C,TypeII-B	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA,NA|165aa|down_1|NZ_CP023777.1_1730542_1731037_+,NA|79aa|down_4|NZ_CP023777.1_1732782_1733019_+	NA|287aa|up_9|NZ_CP023777.1_1714950_1715811_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|311aa|up_8|NZ_CP023777.1_1715898_1716831_+	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|132aa|up_7|NZ_CP023777.1_1716877_1717273_+	pfam07681, DoxX, DoxX	NA|224aa|up_6|NZ_CP023777.1_1717450_1718122_+	cd06561, AlkD_like, A new structural DNA glycosylase	NA|579aa|up_5|NZ_CP023777.1_1718124_1719861_-	cd07563, Peptidase_S41_IRBP, Interphotoreceptor retinoid-binding protein; serine protease family S41	cas9|1411aa|up_4|NZ_CP023777.1_1720327_1724560_+	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	cas1|299aa|up_3|NZ_CP023777.1_1724572_1725469_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|112aa|up_2|NZ_CP023777.1_1725482_1725818_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|106aa|up_1|NZ_CP023777.1_1726692_1727010_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|310aa|up_0|NZ_CP023777.1_1726937_1727867_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|93aa|down_0|NZ_CP023777.1_1729893_1730172_+	pfam14338, Mrr_N, Mrr N-terminal domain	NA|165aa|down_1|NZ_CP023777.1_1730542_1731037_+	NA	NA|113aa|down_2|NZ_CP023777.1_1731727_1732066_+	pfam01381, HTH_3, Helix-turn-helix	NA|248aa|down_3|NZ_CP023777.1_1732058_1732802_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|79aa|down_4|NZ_CP023777.1_1732782_1733019_+	NA	NA|108aa|down_5|NZ_CP023777.1_1733067_1733391_+	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|193aa|down_6|NZ_CP023777.1_1733539_1734118_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|385aa|down_7|NZ_CP023777.1_1734194_1735349_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|1101aa|down_8|NZ_CP023777.1_1735507_1738810_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|483aa|down_9|NZ_CP023777.1_1738825_1740274_+	cd08977, SusD, starch binding outer membrane protein SusD
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	7	2189446-2189593	7	CRISPRCasFinder	no		WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	Orphan	AGAAACAATAAGTGTTGGAAATCTGGGTTCATAAATGTGAATACTTC	47	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA|175aa|up_8|NZ_CP023777.1_2180395_2180920_+,NA|285aa|up_6|NZ_CP023777.1_2183186_2184041_+,NA|70aa|up_3|NZ_CP023777.1_2186829_2187039_-,NA|195aa|down_9|NZ_CP023777.1_2204437_2205022_+	NA|240aa|up_9|NZ_CP023777.1_2179516_2180236_+	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|175aa|up_8|NZ_CP023777.1_2180395_2180920_+	NA	NA|626aa|up_7|NZ_CP023777.1_2181022_2182900_+	cd09604, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain	NA|285aa|up_6|NZ_CP023777.1_2183186_2184041_+	NA	NA|477aa|up_5|NZ_CP023777.1_2184312_2185743_-	cd04278, ZnMc_MMP, Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family	NA|187aa|up_4|NZ_CP023777.1_2186119_2186680_-	pfam12867, DinB_2, DinB superfamily	NA|70aa|up_3|NZ_CP023777.1_2186829_2187039_-	NA	NA|137aa|up_2|NZ_CP023777.1_2187084_2187495_-	pfam11304, DUF3106, Protein of unknown function (DUF3106)	NA|187aa|up_1|NZ_CP023777.1_2187506_2188067_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|300aa|up_0|NZ_CP023777.1_2188441_2189341_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|211aa|down_0|NZ_CP023777.1_2189890_2190523_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|379aa|down_1|NZ_CP023777.1_2190557_2191694_-	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|377aa|down_2|NZ_CP023777.1_2191849_2192980_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|362aa|down_3|NZ_CP023777.1_2193050_2194136_+	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family	NA|442aa|down_4|NZ_CP023777.1_2194282_2195608_+	cd06105, ScCit1-2_like, Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like	NA|704aa|down_5|NZ_CP023777.1_2195715_2197827_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|1233aa|down_6|NZ_CP023777.1_2198043_2201742_+	pfam13585, CHU_C, C-terminal domain of CHU protein family	NA|340aa|down_7|NZ_CP023777.1_2201749_2202769_+	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family	NA|471aa|down_8|NZ_CP023777.1_2202825_2204238_+	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|195aa|down_9|NZ_CP023777.1_2204437_2205022_+	NA
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	8	2740253-2740369	8	CRISPRCasFinder	no		WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	Orphan	GAACAGCGGGGCTTCCAATTTCTGATATCGAAAC	34	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA,NA|308aa|down_5|NZ_CP023777.1_2749653_2750577_+,NA|223aa|down_8|NZ_CP023777.1_2752590_2753259_-	NA|199aa|up_9|NZ_CP023777.1_2726513_2727110_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|396aa|up_8|NZ_CP023777.1_2727166_2728354_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|1101aa|up_7|NZ_CP023777.1_2728729_2732032_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|468aa|up_6|NZ_CP023777.1_2732048_2733452_+	cd08977, SusD, starch binding outer membrane protein SusD	NA|274aa|up_5|NZ_CP023777.1_2733481_2734303_+	pfam16132, DUF4843, Domain of unknown function (DUF4843)	NA|540aa|up_4|NZ_CP023777.1_2734332_2735952_+	pfam16407, PKD_2, PKD-like family	NA|150aa|up_3|NZ_CP023777.1_2736035_2736485_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|469aa|up_2|NZ_CP023777.1_2736864_2738271_+	smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes	NA|239aa|up_1|NZ_CP023777.1_2738388_2739105_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|182aa|up_0|NZ_CP023777.1_2739325_2739871_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|397aa|down_0|NZ_CP023777.1_2740908_2742099_-	cd00249, AGE, AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	NA|462aa|down_1|NZ_CP023777.1_2742082_2743468_-	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|389aa|down_2|NZ_CP023777.1_2743496_2744663_-	cd08993, GH130, Glycosyl hydrolase family 130	NA|1024aa|down_3|NZ_CP023777.1_2745027_2748099_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|508aa|down_4|NZ_CP023777.1_2748119_2749643_+	pfam07980, SusD_RagB, SusD family	NA|308aa|down_5|NZ_CP023777.1_2749653_2750577_+	NA	NA|343aa|down_6|NZ_CP023777.1_2750586_2751615_+	pfam02156, Glyco_hydro_26, Glycosyl hydrolase family 26	NA|311aa|down_7|NZ_CP023777.1_2751605_2752538_+	pfam17251, Pom, Protochlamydia outer membrane protein	NA|223aa|down_8|NZ_CP023777.1_2752590_2753259_-	NA	NA|560aa|down_9|NZ_CP023777.1_2753377_2755057_-	pfam16586, DUF5060, Domain of unknown function (DUF5060)
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	9	2904617-2904758	9	CRISPRCasFinder	no		WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	Orphan	CCTGCGAGTTTTATTTTGAAATTACTTGAAACCGCGGCTAGTTCGAGCTTCCA	53	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA,NA|57aa|down_0|NZ_CP023777.1_2905255_2905426_-,NA|155aa|down_1|NZ_CP023777.1_2905699_2906164_+,NA|286aa|down_2|NZ_CP023777.1_2906182_2907040_-	NA|185aa|up_9|NZ_CP023777.1_2896442_2896997_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|161aa|up_8|NZ_CP023777.1_2897015_2897498_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|144aa|up_7|NZ_CP023777.1_2897550_2897982_+	PRK10293, PRK10293, 1,4-dihydroxy-2-naphthoyl-CoA hydrolase	NA|209aa|up_6|NZ_CP023777.1_2898040_2898667_-	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|213aa|up_5|NZ_CP023777.1_2898758_2899397_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|126aa|up_4|NZ_CP023777.1_2899447_2899825_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|152aa|up_3|NZ_CP023777.1_2899904_2900360_-	pfam03168, LEA_2, Late embryogenesis abundant protein	NA|311aa|up_2|NZ_CP023777.1_2900483_2901416_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|213aa|up_1|NZ_CP023777.1_2902105_2902744_+	pfam08889, WbqC, WbqC-like protein family	NA|465aa|up_0|NZ_CP023777.1_2903060_2904455_+	cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase	NA|57aa|down_0|NZ_CP023777.1_2905255_2905426_-	NA	NA|155aa|down_1|NZ_CP023777.1_2905699_2906164_+	NA	NA|286aa|down_2|NZ_CP023777.1_2906182_2907040_-	NA	NA|149aa|down_3|NZ_CP023777.1_2907229_2907676_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|138aa|down_4|NZ_CP023777.1_2907887_2908301_+	pfam06491, Disulph_isomer, Disulphide isomerase	NA|433aa|down_5|NZ_CP023777.1_2908491_2909790_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|141aa|down_6|NZ_CP023777.1_2909799_2910222_+	pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain	NA|495aa|down_7|NZ_CP023777.1_2910305_2911790_+	cd16145, ARS_like, uncharacterized arylsulfatase subfamily	NA|818aa|down_8|NZ_CP023777.1_2912216_2914670_+	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family	NA|846aa|down_9|NZ_CP023777.1_2914910_2917448_+	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	10	3533328-3533452	10	CRISPRCasFinder	no		WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	Orphan	GTCAGGATTCAAACCTGAAACCTTTTGATCCGTAGTCA	38	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA|84aa|up_9|NZ_CP023777.1_3526217_3526469_-,NA|121aa|up_6|NZ_CP023777.1_3527807_3528170_+,NA|432aa|up_2|NZ_CP023777.1_3530558_3531854_+,NA|228aa|down_2|NZ_CP023777.1_3536372_3537056_-,NA|430aa|down_5|NZ_CP023777.1_3540257_3541547_+	NA|84aa|up_9|NZ_CP023777.1_3526217_3526469_-	NA	NA|73aa|up_8|NZ_CP023777.1_3526487_3526706_-	pfam12732, YtxH, YtxH-like protein	NA|253aa|up_7|NZ_CP023777.1_3526724_3527483_-	pfam04306, DUF456, Protein of unknown function (DUF456)	NA|121aa|up_6|NZ_CP023777.1_3527807_3528170_+	NA	NA|142aa|up_5|NZ_CP023777.1_3528172_3528598_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|177aa|up_4|NZ_CP023777.1_3528675_3529206_-	pfam12867, DinB_2, DinB superfamily	NA|351aa|up_3|NZ_CP023777.1_3529341_3530394_-	cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)	NA|432aa|up_2|NZ_CP023777.1_3530558_3531854_+	NA	NA|234aa|up_1|NZ_CP023777.1_3531874_3532576_+	TIGR03351, PhnX-like, phosphonatase-like hydrolase	NA|195aa|up_0|NZ_CP023777.1_3532612_3533197_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|296aa|down_0|NZ_CP023777.1_3533550_3534438_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|401aa|down_1|NZ_CP023777.1_3535020_3536223_+	cd05199, SDH_like, Saccharopine Dehydrogenase like proteins	NA|228aa|down_2|NZ_CP023777.1_3536372_3537056_-	NA	NA|675aa|down_3|NZ_CP023777.1_3537221_3539246_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|253aa|down_4|NZ_CP023777.1_3539251_3540010_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|430aa|down_5|NZ_CP023777.1_3540257_3541547_+	NA	NA|223aa|down_6|NZ_CP023777.1_3541633_3542302_+	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs	NA|354aa|down_7|NZ_CP023777.1_3542839_3543901_+	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]	NA|280aa|down_8|NZ_CP023777.1_3544088_3544928_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|217aa|down_9|NZ_CP023777.1_3544986_3545637_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]
GCF_002557795.1_ASM255779v1	NZ_CP023777	Chitinophaga caeni strain 13 chromosome, complete genome	11	4402527-4402680	11	CRISPRCasFinder	no		WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	Orphan	AAGCTCGGACCCACGCACAATTGTCAACATTTACAATTGTACCGGAAACCAAA	53	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas9,cas1,cas2,DEDDh,cas3,RT,PD-DExK	NA,NA|76aa|down_6|NZ_CP023777.1_4410620_4410848_-	NA|113aa|up_9|NZ_CP023777.1_4387682_4388021_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|268aa|up_8|NZ_CP023777.1_4388198_4389002_-	pfam12844, HTH_19, Helix-turn-helix domain	NA|244aa|up_7|NZ_CP023777.1_4389076_4389808_+	COG4544, COG4544, Uncharacterized conserved protein [Function unknown]	NA|499aa|up_6|NZ_CP023777.1_4389809_4391306_+	cd03468, PolY_like, DNA Polymerase Y-family	NA|1077aa|up_5|NZ_CP023777.1_4391321_4394552_+	PRK05672, dnaE2, error-prone DNA polymerase; Validated	NA|424aa|up_4|NZ_CP023777.1_4395134_4396406_-	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain	NA|271aa|up_3|NZ_CP023777.1_4396932_4397745_+	PRK06181, PRK06181, SDR family oxidoreductase	NA|276aa|up_2|NZ_CP023777.1_4397922_4398750_+	pfam01887, SAM_adeno_trans, S-adenosyl-l-methionine hydroxide adenosyltransferase	NA|106aa|up_1|NZ_CP023777.1_4398746_4399064_+	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|1074aa|up_0|NZ_CP023777.1_4399187_4402409_+	pfam11028, DUF2723, Protein of unknown function (DUF2723)	NA|384aa|down_0|NZ_CP023777.1_4402894_4404046_-	TIGR03364, putative_secreted_oxidoreductase, FAD dependent oxidoreductase TIGR03364	NA|277aa|down_1|NZ_CP023777.1_4404270_4405101_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|365aa|down_2|NZ_CP023777.1_4405259_4406354_+	COG4867, COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]	NA|504aa|down_3|NZ_CP023777.1_4406382_4407894_+	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]	NA|435aa|down_4|NZ_CP023777.1_4408025_4409330_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|243aa|down_5|NZ_CP023777.1_4409383_4410112_+	pfam06439, DUF1080, Domain of Unknown Function (DUF1080)	NA|76aa|down_6|NZ_CP023777.1_4410620_4410848_-	NA	NA|293aa|down_7|NZ_CP023777.1_4411179_4412058_+	cd00436, UP_TbUP-like, uridine phosphorylases similar to Trypanosoma brucei UP	NA|260aa|down_8|NZ_CP023777.1_4412111_4412891_+	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|313aa|down_9|NZ_CP023777.1_4412946_4413885_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family
