assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002633765.1_ASM263376v1	NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	1	688416-688517	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP017685.1_686354_686471_+,NA|230aa|down_2|NZ_CP017685.1_690338_691028_-,NA|100aa|down_6|NZ_CP017685.1_693419_693719_+	NA|206aa|up_9|NZ_CP017685.1_677501_678119_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|NZ_CP017685.1_678134_679142_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|NZ_CP017685.1_679727_680525_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_6|NZ_CP017685.1_680885_681530_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|120aa|up_5|NZ_CP017685.1_684524_684884_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP017685.1_685073_685790_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP017685.1_685789_686263_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP017685.1_686354_686471_+	NA	NA|215aa|up_1|NZ_CP017685.1_686615_687260_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP017685.1_687375_688242_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP017685.1_688534_689755_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP017685.1_689751_690240_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP017685.1_690338_691028_-	NA	NA|377aa|down_3|NZ_CP017685.1_691366_692496_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|94aa|down_4|NZ_CP017685.1_692543_692825_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|130aa|down_5|NZ_CP017685.1_692892_693282_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|100aa|down_6|NZ_CP017685.1_693419_693719_+	NA	NA|181aa|down_7|NZ_CP017685.1_693798_694341_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_8|NZ_CP017685.1_694435_695002_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_9|NZ_CP017685.1_695003_695462_-	PRK00124, PRK00124, YaiI/YqxD family protein
GCF_002633765.1_ASM263376v1	NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	2	794739-794818	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAGCTTCTATGTTGGGGCCCCGCC	24	1	6	794763-794794|794763-794794|794763-794794|794763-794794|794763-794794|794763-794794	NZ_CP017685.1_229873-229842|NZ_CP017685.1_2239383-2239352|NZ_CP017685.1_2239439-2239408|NZ_CP017685.1_2397951-2397920|NZ_CP017685.1_2398009-2397978|NZ_CP017685.1_1858398-1858367	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|153aa|down_8|NZ_CP017685.1_805392_805851_+	NA|311aa|up_9|NZ_CP017685.1_783225_784158_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_8|NZ_CP017685.1_784163_785003_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_7|NZ_CP017685.1_785010_785496_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_6|NZ_CP017685.1_785503_786943_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_5|NZ_CP017685.1_787009_787945_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_4|NZ_CP017685.1_788597_789509_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_3|NZ_CP017685.1_789505_790501_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_2|NZ_CP017685.1_790611_791556_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_1|NZ_CP017685.1_792118_792706_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|up_0|NZ_CP017685.1_792887_794522_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_0|NZ_CP017685.1_794968_795871_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_1|NZ_CP017685.1_796573_797203_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_2|NZ_CP017685.1_797811_798825_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_3|NZ_CP017685.1_798877_799888_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_4|NZ_CP017685.1_800026_801217_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_5|NZ_CP017685.1_801338_802100_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_6|NZ_CP017685.1_802102_803620_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_7|NZ_CP017685.1_803749_805054_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_8|NZ_CP017685.1_805392_805851_+	NA	NA|78aa|down_9|NZ_CP017685.1_805917_806151_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
GCF_002633765.1_ASM263376v1	NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	3	898353-898520	1,3	PILER-CR,CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGCCAG,AAAGTCAGCTTACAATAATGTGCAAGTTGG	42,30	2	19	898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898470-898483|898465-898490|898465-898490|898465-898490	NZ_CP017685.1_229854-229867|NZ_CP017685.1_267007-267020|NZ_CP017685.1_794726-794713|NZ_CP017685.1_849660-849647|NZ_CP017685.1_1111598-1111611|NZ_CP017685.1_1332335-1332322|NZ_CP017685.1_2194003-2193990|NZ_CP017685.1_2204809-2204796|NZ_CP017685.1_2204869-2204856|NZ_CP017685.1_2204929-2204916|NZ_CP017685.1_2239252-2239265|NZ_CP017685.1_2239308-2239321|NZ_CP017685.1_2239364-2239377|NZ_CP017685.1_2239420-2239433|NZ_CP017685.1_2397932-2397945|NZ_CP017685.1_2397990-2398003|NZ_CP017685.1_229820-229845|NZ_CP017685.1_2239330-2239355|NZ_CP017685.1_2239386-2239411	NA:NA	2,1	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP017685.1_887268_888765_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP017685.1_888757_889087_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP017685.1_889098_889527_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP017685.1_889519_891925_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP017685.1_892055_892439_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP017685.1_892502_893096_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP017685.1_893511_893889_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP017685.1_894249_895377_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP017685.1_895684_896875_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP017685.1_896983_898228_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP017685.1_898676_899606_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP017685.1_899847_901227_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP017685.1_901216_902422_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP017685.1_902772_904104_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP017685.1_905029_905605_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP017685.1_905609_906134_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP017685.1_906149_906725_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP017685.1_906884_910361_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP017685.1_910361_914015_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP017685.1_914180_915083_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002633765.1_ASM263376v1	NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	4	2166237-2166375	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	51	1	1	2166288-2166324	NZ_CP017685.1_2166199-2166235	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|93aa|up_7|NZ_CP017685.1_2158275_2158554_+,NA|67aa|up_1|NZ_CP017685.1_2164910_2165111_+,NA|61aa|up_0|NZ_CP017685.1_2165092_2165275_-,NA	NA|807aa|up_9|NZ_CP017685.1_2153927_2156348_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_8|NZ_CP017685.1_2156546_2157401_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|93aa|up_7|NZ_CP017685.1_2158275_2158554_+	NA	NA|506aa|up_6|NZ_CP017685.1_2158563_2160081_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|272aa|up_5|NZ_CP017685.1_2160305_2161121_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP017685.1_2161415_2161841_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP017685.1_2162216_2162921_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP017685.1_2162957_2164622_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|67aa|up_1|NZ_CP017685.1_2164910_2165111_+	NA	NA|61aa|up_0|NZ_CP017685.1_2165092_2165275_-	NA	NA|133aa|down_0|NZ_CP017685.1_2168151_2168550_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_1|NZ_CP017685.1_2168563_2169001_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_2|NZ_CP017685.1_2169240_2170044_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_3|NZ_CP017685.1_2170048_2170855_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_4|NZ_CP017685.1_2170844_2171705_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_5|NZ_CP017685.1_2171701_2172511_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_6|NZ_CP017685.1_2173048_2173417_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_7|NZ_CP017685.1_2173433_2174378_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_8|NZ_CP017685.1_2174452_2174842_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|122aa|down_9|NZ_CP017685.1_2174865_2175231_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated
GCF_002633765.1_ASM263376v1	NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	5	2357278-2357371	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTTCAAATTTATTTGTTAGAAAGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_CP017685.1_2354999_2355104_+,NA|35aa|down_0|NZ_CP017685.1_2357565_2357670_-	NA|200aa|up_9|NZ_CP017685.1_2348476_2349076_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP017685.1_2349094_2349457_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP017685.1_2349711_2350962_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP017685.1_2351058_2351790_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP017685.1_2351786_2352506_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP017685.1_2352486_2353266_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP017685.1_2353386_2354826_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP017685.1_2354999_2355104_+	NA	NA|229aa|up_1|NZ_CP017685.1_2355257_2355944_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP017685.1_2356270_2357137_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|35aa|down_0|NZ_CP017685.1_2357565_2357670_-	NA	NA|438aa|down_1|NZ_CP017685.1_2357764_2359078_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP017685.1_2359613_2360543_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP017685.1_2361109_2362057_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP017685.1_2362058_2363036_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP017685.1_2363094_2363562_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP017685.1_2363572_2364265_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP017685.1_2364275_2365391_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP017685.1_2365368_2366376_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP017685.1_2366377_2367736_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
