assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002633785.1_ASM263378v1	NZ_CP017684	Staphylococcus aureus strain CFSAN007847 chromosome, complete genome	1	799956-800040	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	799982-800014|799982-800014	NZ_CP017684.1_1032866-1032898|NZ_CP017684.1_2414541-2414509	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA|33aa|up_1|NZ_CP017684.1_798396_798495_+,NA	NA|357aa|up_9|NZ_CP017684.1_788405_789476_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP017684.1_789793_790849_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP017684.1_791012_791654_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP017684.1_791797_792664_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP017684.1_793027_794110_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP017684.1_794102_794777_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP017684.1_794837_795410_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP017684.1_795823_798355_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP017684.1_798396_798495_+	NA	NA|370aa|up_0|NZ_CP017684.1_798669_799780_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|NZ_CP017684.1_800548_801388_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|NZ_CP017684.1_801561_802212_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|NZ_CP017684.1_802208_802445_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|NZ_CP017684.1_802713_804699_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|NZ_CP017684.1_804706_807553_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|NZ_CP017684.1_808163_809096_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|NZ_CP017684.1_809101_809944_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|NZ_CP017684.1_809951_810437_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|NZ_CP017684.1_810444_811884_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|NZ_CP017684.1_811950_812886_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_002633785.1_ASM263378v1	NZ_CP017684	Staphylococcus aureus strain CFSAN007847 chromosome, complete genome	2	857909-857988	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|187aa|up_9|NZ_CP017684.1_850883_851444_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP017684.1_851516_852134_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP017684.1_852289_852784_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP017684.1_853182_853605_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP017684.1_853752_854469_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP017684.1_854551_855091_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP017684.1_855240_855561_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP017684.1_855704_856061_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP017684.1_856218_856599_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP017684.1_856776_857655_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP017684.1_858245_858632_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP017684.1_858624_858921_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP017684.1_859170_860196_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP017684.1_860188_860884_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP017684.1_860901_861723_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP017684.1_862538_862733_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP017684.1_862966_863818_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP017684.1_864145_864907_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP017684.1_865004_866312_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP017684.1_866426_867668_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_002633785.1_ASM263378v1	NZ_CP017684	Staphylococcus aureus strain CFSAN007847 chromosome, complete genome	3	907030-907115	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	907060-907085|907060-907085	NZ_CP017684.1_2154307-2154332|NZ_CP017684.1_2214391-2214416	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP017684.1_895919_897416_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP017684.1_897408_897738_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP017684.1_897749_898178_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP017684.1_898170_900576_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP017684.1_900706_901090_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP017684.1_901153_901747_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP017684.1_902161_902539_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP017684.1_902900_904028_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP017684.1_904335_905526_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP017684.1_905634_906879_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP017684.1_907273_908203_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP017684.1_908444_909824_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP017684.1_909813_911019_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP017684.1_911369_912701_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP017684.1_913026_913602_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP017684.1_913606_914131_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP017684.1_914146_914722_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP017684.1_914881_918358_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP017684.1_918358_922012_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP017684.1_922177_923080_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002633785.1_ASM263378v1	NZ_CP017684	Staphylococcus aureus strain CFSAN007847 chromosome, complete genome	4	1208221-1208313	4	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|215aa|up_9|NZ_CP017684.1_1198095_1198740_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP017684.1_1198746_1199388_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP017684.1_1199768_1199957_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP017684.1_1200399_1200774_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP017684.1_1200788_1202435_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP017684.1_1202624_1204685_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP017684.1_1204887_1205460_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP017684.1_1205464_1206451_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP017684.1_1206443_1207370_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP017684.1_1207362_1208097_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP017684.1_1208402_1208636_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP017684.1_1208751_1209483_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP017684.1_1209629_1213196_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP017684.1_1213195_1214446_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP017684.1_1214432_1214765_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP017684.1_1214790_1216158_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP017684.1_1216592_1216868_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP017684.1_1217055_1217559_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP017684.1_1217558_1218296_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP017684.1_1218398_1218749_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_002633785.1_ASM263378v1	NZ_CP017684	Staphylococcus aureus strain CFSAN007847 chromosome, complete genome	5	1974591-1974718	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_7|NZ_CP017684.1_1966750_1967146_-,NA|51aa|up_6|NZ_CP017684.1_1967746_1967899_-,NA	NA|274aa|up_9|NZ_CP017684.1_1963892_1964714_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP017684.1_1965169_1966555_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP017684.1_1966750_1967146_-	NA	NA|51aa|up_6|NZ_CP017684.1_1967746_1967899_-	NA	NA|200aa|up_5|NZ_CP017684.1_1967923_1968523_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP017684.1_1968681_1969152_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP017684.1_1969156_1970299_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP017684.1_1970434_1971163_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP017684.1_1971149_1972607_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP017684.1_1972865_1973927_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP017684.1_1982755_1983202_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP017684.1_1983298_1984249_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP017684.1_1984254_1984710_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP017684.1_1984790_1986080_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP017684.1_1986372_1987467_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP017684.1_1987657_1989394_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP017684.1_1989684_1990227_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP017684.1_1990529_1991567_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP017684.1_1991718_1992696_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP017684.1_1992956_1993793_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_002633785.1_ASM263378v1	NZ_CP017684	Staphylococcus aureus strain CFSAN007847 chromosome, complete genome	6	2019523-2019714	1	CRT	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	1	8	2019602-2019635|2019602-2019635|2019602-2019635|2019602-2019635|2019602-2019635|2019602-2019635|2019602-2019635|2019602-2019635	NZ_CP017684.1_255868-255835|NZ_CP017684.1_330625-330592|NZ_CP017684.1_766850-766817|NZ_CP017684.1_800021-800054|NZ_CP017684.1_1059023-1059056|NZ_CP017684.1_1752092-1752059|NZ_CP017684.1_2380221-2380254|NZ_CP017684.1_2522293-2522260	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|37aa|up_9|NZ_CP017684.1_2010928_2011039_-,NA|31aa|up_5|NZ_CP017684.1_2014044_2014137_-,NA|49aa|down_0|NZ_CP017684.1_2020018_2020165_-	NA|37aa|up_9|NZ_CP017684.1_2010928_2011039_-	NA	NA|244aa|up_8|NZ_CP017684.1_2011124_2011856_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP017684.1_2011857_2013171_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP017684.1_2013462_2013963_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP017684.1_2014044_2014137_-	NA	DEDDh|185aa|up_4|NZ_CP017684.1_2014353_2014908_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP017684.1_2014974_2016045_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP017684.1_2016291_2016822_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP017684.1_2016991_2018353_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP017684.1_2018433_2019381_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP017684.1_2020018_2020165_-	NA	NA|476aa|down_1|NZ_CP017684.1_2020203_2021631_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP017684.1_2021643_2023101_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP017684.1_2023102_2023405_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP017684.1_2023771_2025310_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP017684.1_2025398_2026598_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP017684.1_2026610_2028614_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP017684.1_2028617_2030810_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP017684.1_2030806_2031499_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP017684.1_2031681_2031984_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002633785.1_ASM263378v1	NZ_CP017684	Staphylococcus aureus strain CFSAN007847 chromosome, complete genome	7	2130265-2130353	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|127aa|up_8|NZ_CP017684.1_2125315_2125696_-,NA|128aa|up_4|NZ_CP017684.1_2128981_2129365_-,NA|68aa|up_3|NZ_CP017684.1_2129366_2129570_-,NA|52aa|up_2|NZ_CP017684.1_2129554_2129710_-,NA	NA|214aa|up_9|NZ_CP017684.1_2124677_2125319_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_8|NZ_CP017684.1_2125315_2125696_-	NA	NA|570aa|up_7|NZ_CP017684.1_2126007_2127717_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_6|NZ_CP017684.1_2127730_2128600_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|106aa|up_5|NZ_CP017684.1_2128663_2128981_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|128aa|up_4|NZ_CP017684.1_2128981_2129365_-	NA	NA|68aa|up_3|NZ_CP017684.1_2129366_2129570_-	NA	NA|52aa|up_2|NZ_CP017684.1_2129554_2129710_-	NA	NA|106aa|up_1|NZ_CP017684.1_2129706_2130024_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP017684.1_2130028_2130247_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP017684.1_2130419_2131094_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP017684.1_2131107_2132280_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP017684.1_2132348_2133965_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP017684.1_2134040_2134325_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP017684.1_2134499_2135243_+	pfam02517, Abi, CAAX protease self-immunity	NA|405aa|down_5|NZ_CP017684.1_2135267_2136482_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP017684.1_2136678_2137305_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP017684.1_2137665_2138451_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP017684.1_2139053_2139188_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP017684.1_2139423_2139987_+	smart00793, AgrB, Accessory gene regulator B
GCF_002633785.1_ASM263378v1	NZ_CP017684	Staphylococcus aureus strain CFSAN007847 chromosome, complete genome	8	2281715-2281916	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|35aa|up_8|NZ_CP017684.1_2263131_2263236_-,NA|53aa|up_7|NZ_CP017684.1_2263915_2264074_+,NA	NA|549aa|up_9|NZ_CP017684.1_2261059_2262706_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|up_8|NZ_CP017684.1_2263131_2263236_-	NA	NA|53aa|up_7|NZ_CP017684.1_2263915_2264074_+	NA	NA|286aa|up_6|NZ_CP017684.1_2264732_2265590_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP017684.1_2265657_2266440_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP017684.1_2266671_2268477_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP017684.1_2269157_2270696_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP017684.1_2270730_2272863_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP017684.1_2272874_2273309_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP017684.1_2273308_2274415_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP017684.1_2282404_2283760_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP017684.1_2283786_2284719_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP017684.1_2284720_2285530_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP017684.1_2285719_2286628_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP017684.1_2292845_2293910_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NZ_CP017684.1_2295689_2296163_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NZ_CP017684.1_2296284_2297628_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NZ_CP017684.1_2297805_2298489_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NZ_CP017684.1_2298507_2299695_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NZ_CP017684.1_2299738_2300254_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase
GCF_002633785.1_ASM263378v1	NZ_CP017684	Staphylococcus aureus strain CFSAN007847 chromosome, complete genome	9	2340248-2340373	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|56aa|up_8|NZ_CP017684.1_2330654_2330822_+,NA|61aa|up_1|NZ_CP017684.1_2339170_2339353_-,NA	NA|139aa|up_9|NZ_CP017684.1_2329995_2330412_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP017684.1_2330654_2330822_+	NA	NA|809aa|up_7|NZ_CP017684.1_2330818_2333245_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP017684.1_2333304_2334159_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP017684.1_2334369_2335185_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP017684.1_2335479_2335905_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP017684.1_2336295_2337000_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP017684.1_2337036_2338701_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP017684.1_2339170_2339353_-	NA	NA|60aa|up_0|NZ_CP017684.1_2340002_2340182_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP017684.1_2340430_2341867_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP017684.1_2342215_2342614_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP017684.1_2342627_2343065_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP017684.1_2343313_2344108_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP017684.1_2344112_2344919_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP017684.1_2344908_2345769_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP017684.1_2345765_2346575_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|523aa|down_7|NZ_CP017684.1_2346950_2348518_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_8|NZ_CP017684.1_2348770_2349139_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_9|NZ_CP017684.1_2349155_2350100_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_002633785.1_ASM263378v1	NZ_CP017684	Staphylococcus aureus strain CFSAN007847 chromosome, complete genome	10	2380257-2380337	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	6	2380282-2380312|2380282-2380312|2380282-2380312|2380282-2380312|2380282-2380312|2380282-2380312	NZ_CP017684.1_1059086-1059116|NZ_CP017684.1_1632147-1632177|NZ_CP017684.1_813256-813286|NZ_CP017684.1_862221-862191|NZ_CP017684.1_907051-907021|NZ_CP017684.1_2008986-2009016	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP017684.1_2370786_2370951_+,NA|106aa|up_8|NZ_CP017684.1_2371195_2371513_+,NA|84aa|up_5|NZ_CP017684.1_2376637_2376889_+,NA|57aa|up_0|NZ_CP017684.1_2380029_2380200_+,NA	NA|55aa|up_9|NZ_CP017684.1_2370786_2370951_+	NA	NA|106aa|up_8|NZ_CP017684.1_2371195_2371513_+	NA	NA|1056aa|up_7|NZ_CP017684.1_2371699_2374867_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP017684.1_2374983_2376249_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP017684.1_2376637_2376889_+	NA	NA|255aa|up_4|NZ_CP017684.1_2376880_2377645_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP017684.1_2377807_2378248_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP017684.1_2378240_2379452_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP017684.1_2379553_2379904_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP017684.1_2380029_2380200_+	NA	NA|341aa|down_0|NZ_CP017684.1_2380480_2381503_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP017684.1_2381522_2382122_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP017684.1_2382128_2382362_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP017684.1_2382367_2382814_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP017684.1_2382827_2383313_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP017684.1_2383309_2384569_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP017684.1_2384631_2385126_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP017684.1_2385127_2385634_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP017684.1_2385662_2386667_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP017684.1_2386834_2387440_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
