assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002741195.1_ASM274119v1	NZ_CP024232	Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome	1	175262-175353	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA|70aa|up_9|NZ_CP024232.1_164338_164548_-,NA	NA|70aa|up_9|NZ_CP024232.1_164338_164548_-	NA	NA|1321aa|up_8|NZ_CP024232.1_164602_168565_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP024232.1_168604_169243_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP024232.1_169530_170622_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP024232.1_170621_171314_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP024232.1_171325_171712_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP024232.1_171719_172520_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP024232.1_172529_173120_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP024232.1_173130_173625_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP024232.1_173645_174974_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP024232.1_175775_176372_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP024232.1_176392_176620_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP024232.1_176657_177899_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP024232.1_178191_179448_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP024232.1_179708_180629_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP024232.1_180628_180934_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP024232.1_181085_181685_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP024232.1_181681_184228_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP024232.1_184227_185400_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP024232.1_185529_186222_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002741195.1_ASM274119v1	NZ_CP024232	Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome	2	371225-371308	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA|479aa|up_6|NZ_CP024232.1_354918_356355_-,NA	NA|116aa|up_9|NZ_CP024232.1_352058_352406_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|524aa|up_8|NZ_CP024232.1_352425_353997_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|69aa|up_7|NZ_CP024232.1_354607_354814_-	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|479aa|up_6|NZ_CP024232.1_354918_356355_-	NA	NA|1653aa|up_5|NZ_CP024232.1_356351_361310_-	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases	NA|188aa|up_4|NZ_CP024232.1_361972_362536_-	pfam11726, Inovirus_Gp2, Inovirus Gp2	NA|478aa|up_3|NZ_CP024232.1_363356_364790_-	pfam13148, DUF3987, Protein of unknown function (DUF3987)	NA|66aa|up_2|NZ_CP024232.1_365008_365206_-	pfam13148, DUF3987, Protein of unknown function (DUF3987)	NA|99aa|up_1|NZ_CP024232.1_365432_365729_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|401aa|up_0|NZ_CP024232.1_369620_370823_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|759aa|down_0|NZ_CP024232.1_371519_373796_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP024232.1_373826_374147_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP024232.1_374469_374694_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP024232.1_374766_376713_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|319aa|down_4|NZ_CP024232.1_377975_378932_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_5|NZ_CP024232.1_378928_380587_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_6|NZ_CP024232.1_381012_381708_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_7|NZ_CP024232.1_382202_383102_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_8|NZ_CP024232.1_383245_384898_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|down_9|NZ_CP024232.1_384909_385878_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional
GCF_002741195.1_ASM274119v1	NZ_CP024232	Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome	3	506074-506218	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA|56aa|up_3|NZ_CP024232.1_503116_503284_+,NA	NA|486aa|up_9|NZ_CP024232.1_496224_497682_-	pfam02386, TrkH, Cation transport protein	NA|62aa|up_8|NZ_CP024232.1_497878_498064_-	pfam06085, Rz1, Lipoprotein Rz1 precursor	NA|166aa|up_7|NZ_CP024232.1_498280_498778_-	cd16900, endolysin_R21-like, endolysin R21-like proteins	NA|72aa|up_6|NZ_CP024232.1_498777_498993_-	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S	NA|320aa|up_5|NZ_CP024232.1_500262_501222_-	COG3272, COG3272, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_4|NZ_CP024232.1_502604_503033_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_3|NZ_CP024232.1_503116_503284_+	NA	NA|73aa|up_2|NZ_CP024232.1_503323_503542_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP024232.1_503519_504590_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP024232.1_504724_506008_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP024232.1_506241_508503_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP024232.1_508685_510119_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP024232.1_510194_511247_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP024232.1_511430_512384_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP024232.1_512424_513420_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP024232.1_513574_514393_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP024232.1_514393_515452_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP024232.1_515454_516144_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP024232.1_516143_516917_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP024232.1_517083_517233_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002741195.1_ASM274119v1	NZ_CP024232	Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome	4	762748-762844	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA,NA	NA|231aa|up_9|NZ_CP024232.1_754543_755236_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP024232.1_755455_755998_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP024232.1_756468_757335_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP024232.1_757336_757549_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP024232.1_757656_758178_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP024232.1_758213_759599_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP024232.1_759772_760267_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP024232.1_760269_760992_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP024232.1_761109_761619_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP024232.1_761615_762683_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP024232.1_762877_763771_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP024232.1_763767_764583_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP024232.1_764593_765853_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|262aa|down_3|NZ_CP024232.1_768799_769585_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_4|NZ_CP024232.1_769812_770958_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_5|NZ_CP024232.1_770979_772281_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_6|NZ_CP024232.1_772337_773699_-	PRK08044, PRK08044, allantoinase AllB	NA|485aa|down_7|NZ_CP024232.1_773758_775213_-	PRK11375, PRK11375, putative allantoin permease	NA|293aa|down_8|NZ_CP024232.1_775381_776260_-	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase	NA|259aa|down_9|NZ_CP024232.1_776359_777136_-	PRK09997, PRK09997, hydroxypyruvate isomerase; Provisional
GCF_002741195.1_ASM274119v1	NZ_CP024232	Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome	5	934856-934999	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	Orphan	ACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA,NA	NA|321aa|up_9|NZ_CP024232.1_925343_926306_-	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|224aa|up_8|NZ_CP024232.1_926921_927593_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|399aa|up_7|NZ_CP024232.1_927602_928799_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|194aa|up_6|NZ_CP024232.1_928776_929358_+	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains	NA|258aa|up_5|NZ_CP024232.1_929359_930133_+	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|92aa|up_4|NZ_CP024232.1_930318_930594_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|370aa|up_3|NZ_CP024232.1_930628_931738_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_2|NZ_CP024232.1_931830_932664_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|up_1|NZ_CP024232.1_932889_933429_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_0|NZ_CP024232.1_933530_934742_-	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|338aa|down_0|NZ_CP024232.1_935119_936133_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_1|NZ_CP024232.1_936129_937080_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_2|NZ_CP024232.1_937076_937886_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_3|NZ_CP024232.1_937895_938762_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_4|NZ_CP024232.1_938779_939724_-	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|555aa|down_5|NZ_CP024232.1_939725_941390_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_6|NZ_CP024232.1_941466_942414_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|361aa|down_7|NZ_CP024232.1_942490_943573_+	PRK09526, lacI, lac repressor; Reviewed	NA|1025aa|down_8|NZ_CP024232.1_943695_946770_+	PRK09525, lacZ, beta-galactosidase	NA|418aa|down_9|NZ_CP024232.1_946821_948075_+	PRK09528, lacY, galactoside permease; Reviewed
GCF_002741195.1_ASM274119v1	NZ_CP024232	Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome	6	2759402-2759653	1	PILER-CR	no		cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	Orphan	TTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA,NA|180aa|down_1|NZ_CP024232.1_2761160_2761700_-	NA|158aa|up_9|NZ_CP024232.1_2748976_2749450_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|NZ_CP024232.1_2749472_2750753_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP024232.1_2751001_2751811_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP024232.1_2751865_2752330_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP024232.1_2752329_2752665_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP024232.1_2752813_2754385_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|NZ_CP024232.1_2754759_2756094_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP024232.1_2756109_2756880_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP024232.1_2756909_2757800_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP024232.1_2757896_2759042_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP024232.1_2759951_2761139_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP024232.1_2761160_2761700_-	NA	NA|115aa|down_2|NZ_CP024232.1_2761955_2762300_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP024232.1_2762488_2763427_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP024232.1_2763525_2764515_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP024232.1_2764536_2765868_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP024232.1_2765893_2767102_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP024232.1_2767135_2769430_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP024232.1_2769443_2769833_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP024232.1_2769904_2771269_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_002741195.1_ASM274119v1	NZ_CP024232	Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome	7	3153796-3154129	6,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,28,28	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	Unclear	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA,NA	NA|919aa|up_9|NZ_CP024232.1_3140388_3143145_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP024232.1_3143201_3144503_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP024232.1_3144550_3146785_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP024232.1_3146862_3147111_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP024232.1_3147110_3147446_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP024232.1_3147516_3148308_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP024232.1_3148535_3150173_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP024232.1_3150260_3151559_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP024232.1_3151618_3152491_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP024232.1_3152784_3153456_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|426aa|down_0|NZ_CP024232.1_3156271_3157549_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_1|NZ_CP024232.1_3157868_3158654_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_2|NZ_CP024232.1_3158723_3160178_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_3|NZ_CP024232.1_3160271_3161609_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_CP024232.1_3161586_3162366_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|NZ_CP024232.1_3162362_3163223_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_CP024232.1_3163370_3163946_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_CP024232.1_3163962_3164223_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_CP024232.1_3164213_3165485_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_9|NZ_CP024232.1_3165562_3165928_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_002741195.1_ASM274119v1	NZ_CP024232	Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome	8	3179678-3180438	3,7,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,12,12	12	TypeI-E	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA,NA	NA|571aa|up_9|NZ_CP024232.1_3168042_3169755_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP024232.1_3169828_3170563_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP024232.1_3170921_3173588_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|451aa|up_6|NZ_CP024232.1_3174002_3175355_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP024232.1_3175503_3175986_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP024232.1_3175998_3177090_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP024232.1_3177092_3177767_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP024232.1_3177753_3178353_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP024232.1_3178368_3179286_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP024232.1_3179287_3179572_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP024232.1_3180458_3181496_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP024232.1_3181747_3182656_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP024232.1_3182657_3184085_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP024232.1_3184084_3184690_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP024232.1_3184739_3185063_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP024232.1_3185256_3185568_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP024232.1_3185586_3186297_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP024232.1_3186296_3186776_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP024232.1_3186772_3187822_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP024232.1_3187802_3188564_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002741195.1_ASM274119v1	NZ_CP024232	Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome	9	3699918-3700035	8	CRISPRCasFinder	no		cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA,NA	NA|62aa|up_9|NZ_CP024232.1_3689203_3689389_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP024232.1_3689401_3690301_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP024232.1_3690493_3691684_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP024232.1_3691680_3692940_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP024232.1_3692929_3694558_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP024232.1_3694830_3696189_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP024232.1_3696193_3697270_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP024232.1_3697732_3698383_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP024232.1_3698436_3698691_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP024232.1_3698690_3699821_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP024232.1_3700054_3702340_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP024232.1_3703035_3706788_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP024232.1_3706915_3707638_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP024232.1_3707784_3710412_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|208aa|down_4|NZ_CP024232.1_3712245_3712869_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_5|NZ_CP024232.1_3713012_3717407_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_6|NZ_CP024232.1_3717407_3719057_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP024232.1_3719061_3719838_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP024232.1_3719911_3721096_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP024232.1_3721126_3722449_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_002741195.1_ASM274119v1	NZ_CP024232	Escherichia coli O6:H16 strain 2014EL-1346-6 chromosome, complete genome	10	4363172-4363295	9	CRISPRCasFinder	no	DEDDh	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA,NA|30aa|down_7|NZ_CP024232.1_4372192_4372282_+	NA|471aa|up_9|NZ_CP024232.1_4352626_4354039_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP024232.1_4354595_4354805_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP024232.1_4355259_4355886_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP024232.1_4355906_4358009_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP024232.1_4358012_4358660_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP024232.1_4358723_4359392_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP024232.1_4359388_4360174_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP024232.1_4360177_4360990_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP024232.1_4361001_4362606_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP024232.1_4362731_4363037_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024232.1_4363609_4364866_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024232.1_4364906_4366280_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024232.1_4366494_4367136_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024232.1_4367175_4368324_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024232.1_4368614_4369826_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024232.1_4369938_4370871_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024232.1_4370867_4371893_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024232.1_4372192_4372282_+	NA	NA|390aa|down_8|NZ_CP024232.1_4372447_4373617_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP024232.1_4373851_4374433_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002741195.1_ASM274119v1	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	1	114928-115085	1	PILER-CR	no			Orphan	ATCCACTATACCGGGTACGG	20	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,c2c9_V-U4,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,RT	NA|41aa|up_9|NZ_CP024236.1_106861_106984_+,NA|114aa|up_8|NZ_CP024236.1_106985_107327_+,NA|120aa|up_7|NZ_CP024236.1_107331_107691_+,NA|235aa|up_6|NZ_CP024236.1_107918_108623_+,NA|140aa|up_5|NZ_CP024236.1_108655_109075_-,NA|166aa|down_0|NZ_CP024236.1_115274_115772_-,NA|68aa|down_1|NZ_CP024236.1_115786_115990_-,NA|59aa|down_3|NZ_CP024236.1_119342_119519_-,NA|386aa|down_5|NZ_CP024236.1_121473_122631_-,NA|274aa|down_7|NZ_CP024236.1_123829_124651_-,NA|67aa|down_9|NZ_CP024236.1_125637_125838_-	NA|41aa|up_9|NZ_CP024236.1_106861_106984_+	NA	NA|114aa|up_8|NZ_CP024236.1_106985_107327_+	NA	NA|120aa|up_7|NZ_CP024236.1_107331_107691_+	NA	NA|235aa|up_6|NZ_CP024236.1_107918_108623_+	NA	NA|140aa|up_5|NZ_CP024236.1_108655_109075_-	NA	NA|795aa|up_4|NZ_CP024236.1_109162_111547_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|203aa|up_3|NZ_CP024236.1_111797_112406_+	pfam13752, DUF4165, Domain of unknown function (DUF4165)	NA|79aa|up_2|NZ_CP024236.1_112427_112664_+	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3)	NA|199aa|up_1|NZ_CP024236.1_112819_113416_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|294aa|up_0|NZ_CP024236.1_113807_114689_+	pfam16441, DUF5038, Domain of unknown function (DUF5038)	NA|166aa|down_0|NZ_CP024236.1_115274_115772_-	NA	NA|68aa|down_1|NZ_CP024236.1_115786_115990_-	NA	NA|819aa|down_2|NZ_CP024236.1_116440_118897_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|59aa|down_3|NZ_CP024236.1_119342_119519_-	NA	NA|585aa|down_4|NZ_CP024236.1_119533_121288_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|386aa|down_5|NZ_CP024236.1_121473_122631_-	NA	NA|275aa|down_6|NZ_CP024236.1_122990_123815_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|274aa|down_7|NZ_CP024236.1_123829_124651_-	NA	NA|236aa|down_8|NZ_CP024236.1_124933_125641_-	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40	NA|67aa|down_9|NZ_CP024236.1_125637_125838_-	NA
