assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	1	480230-480353	1	CRISPRCasFinder	no	DEDDh	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA,NA|30aa|down_7|NZ_CP024260.1_489249_489339_+	NA|471aa|up_9|NZ_CP024260.1_469714_471127_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|60aa|up_8|NZ_CP024260.1_471683_471863_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP024260.1_472317_472944_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP024260.1_472964_475067_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP024260.1_475070_475718_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP024260.1_475781_476450_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP024260.1_476446_477232_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP024260.1_477235_478048_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP024260.1_478059_479664_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP024260.1_479789_480095_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024260.1_480667_481924_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024260.1_481964_483338_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024260.1_483552_484194_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024260.1_484233_485382_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024260.1_485672_486884_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024260.1_486996_487929_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024260.1_487925_488951_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024260.1_489249_489339_+	NA	NA|390aa|down_8|NZ_CP024260.1_489504_490674_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP024260.1_490908_491490_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	2	1123045-1123136	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA|70aa|up_9|NZ_CP024260.1_1112121_1112331_-,NA	NA|70aa|up_9|NZ_CP024260.1_1112121_1112331_-	NA	NA|1321aa|up_8|NZ_CP024260.1_1112385_1116348_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP024260.1_1116387_1117026_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP024260.1_1117313_1118405_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP024260.1_1118404_1119097_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP024260.1_1119108_1119495_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP024260.1_1119502_1120303_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP024260.1_1120312_1120903_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP024260.1_1120913_1121408_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP024260.1_1121428_1122757_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP024260.1_1123559_1124156_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP024260.1_1124176_1124404_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP024260.1_1124441_1125683_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP024260.1_1125975_1127232_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP024260.1_1127492_1128413_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP024260.1_1128412_1128718_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP024260.1_1128869_1129469_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP024260.1_1129465_1132012_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP024260.1_1132011_1133184_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP024260.1_1133313_1134006_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	3	1267218-1267301	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA,NA	NA|431aa|up_9|NZ_CP024260.1_1252101_1253394_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP024260.1_1253484_1254828_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP024260.1_1254838_1255450_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1408aa|up_6|NZ_CP024260.1_1255604_1259828_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP024260.1_1259962_1260457_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP024260.1_1261001_1261967_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP024260.1_1262089_1263856_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP024260.1_1263856_1265578_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP024260.1_1265619_1266324_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP024260.1_1266608_1266827_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP024260.1_1267512_1269789_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP024260.1_1269819_1270140_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP024260.1_1270462_1270687_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP024260.1_1270759_1272706_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP024260.1_1272702_1273818_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP024260.1_1273968_1274925_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP024260.1_1274921_1276580_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP024260.1_1277005_1277701_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP024260.1_1278195_1279095_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP024260.1_1279238_1280891_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	4	1401829-1401973	4	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA|56aa|up_3|NZ_CP024260.1_1398871_1399039_+,NA	NA|62aa|up_9|NZ_CP024260.1_1393632_1393818_-	pfam06085, Rz1, Lipoprotein Rz1 precursor	NA|166aa|up_8|NZ_CP024260.1_1394034_1394532_-	cd16900, endolysin_R21-like, endolysin R21-like proteins	NA|72aa|up_7|NZ_CP024260.1_1394531_1394747_-	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S	NA|244aa|up_6|NZ_CP024260.1_1394934_1395666_-	PRK09940, PRK09940, transcriptional regulator YdeO; Provisional	NA|320aa|up_5|NZ_CP024260.1_1396017_1396977_-	COG3272, COG3272, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_4|NZ_CP024260.1_1398359_1398788_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_3|NZ_CP024260.1_1398871_1399039_+	NA	NA|73aa|up_2|NZ_CP024260.1_1399078_1399297_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP024260.1_1399274_1400345_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP024260.1_1400479_1401763_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP024260.1_1401996_1404258_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP024260.1_1404440_1405874_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP024260.1_1405949_1407002_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP024260.1_1407185_1408139_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP024260.1_1408179_1409175_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP024260.1_1409329_1410148_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP024260.1_1410148_1411207_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP024260.1_1411209_1411899_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP024260.1_1411898_1412672_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP024260.1_1412838_1412988_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	5	1653947-1654043	5	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA,NA	NA|388aa|up_9|NZ_CP024260.1_1644255_1645419_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|339aa|up_8|NZ_CP024260.1_1646297_1647314_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|289aa|up_7|NZ_CP024260.1_1647667_1648534_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP024260.1_1648535_1648748_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP024260.1_1648855_1649377_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP024260.1_1649412_1650798_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP024260.1_1650971_1651466_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP024260.1_1651468_1652191_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP024260.1_1652308_1652818_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP024260.1_1652814_1653882_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP024260.1_1654076_1654970_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP024260.1_1654966_1655782_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP024260.1_1655792_1657052_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|down_3|NZ_CP024260.1_1661045_1661861_-	PRK10163, PRK10163, HTH-type transcriptional repressor AllR	NA|161aa|down_4|NZ_CP024260.1_1661938_1662421_-	COG3194, DAL3, Ureidoglycolate hydrolase [Nucleotide transport and metabolism]	NA|309aa|down_5|NZ_CP024260.1_1662650_1663577_+	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|365aa|down_6|NZ_CP024260.1_1663645_1664740_+	COG2603, COG2603, Predicted ATPase [General function prediction only]	NA|123aa|down_7|NZ_CP024260.1_1667700_1668069_-	pfam15631, Imm-NTF2-2, NTF2 fold immunity protein	NA|1427aa|down_8|NZ_CP024260.1_1668108_1672389_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|805aa|down_9|NZ_CP024260.1_1672818_1675233_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	6	1785206-1785350	6	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA,NA|28aa|down_2|NZ_CP024260.1_1787395_1787479_-	NA|357aa|up_9|NZ_CP024260.1_1770344_1771415_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP024260.1_1771507_1772089_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP024260.1_1772093_1773911_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP024260.1_1774066_1775440_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP024260.1_1775515_1776835_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP024260.1_1777241_1778537_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP024260.1_1778594_1779284_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP024260.1_1779473_1780676_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP024260.1_1780672_1783819_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP024260.1_1783944_1785129_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP024260.1_1785373_1786282_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP024260.1_1786406_1787318_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP024260.1_1787395_1787479_-	NA	NA|95aa|down_3|NZ_CP024260.1_1787964_1788249_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP024260.1_1788320_1788998_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP024260.1_1789255_1789447_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP024260.1_1789496_1790021_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_CP024260.1_1790197_1790662_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP024260.1_1790781_1791591_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP024260.1_1791607_1792723_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	7	1818539-1818682	7	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Orphan	ACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA,NA	NA|321aa|up_9|NZ_CP024260.1_1809026_1809989_-	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|224aa|up_8|NZ_CP024260.1_1810604_1811276_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|399aa|up_7|NZ_CP024260.1_1811285_1812482_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|194aa|up_6|NZ_CP024260.1_1812459_1813041_+	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains	NA|258aa|up_5|NZ_CP024260.1_1813042_1813816_+	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|92aa|up_4|NZ_CP024260.1_1814001_1814277_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|370aa|up_3|NZ_CP024260.1_1814311_1815421_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_2|NZ_CP024260.1_1815513_1816347_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|up_1|NZ_CP024260.1_1816572_1817112_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_0|NZ_CP024260.1_1817213_1818425_-	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|338aa|down_0|NZ_CP024260.1_1818802_1819816_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_1|NZ_CP024260.1_1819812_1820763_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_2|NZ_CP024260.1_1820759_1821569_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_3|NZ_CP024260.1_1821578_1822445_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_4|NZ_CP024260.1_1822462_1823407_-	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|555aa|down_5|NZ_CP024260.1_1823408_1825073_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_6|NZ_CP024260.1_1825149_1826097_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|361aa|down_7|NZ_CP024260.1_1826173_1827256_+	PRK09526, lacI, lac repressor; Reviewed	NA|1025aa|down_8|NZ_CP024260.1_1827378_1830453_+	PRK09525, lacZ, beta-galactosidase	NA|418aa|down_9|NZ_CP024260.1_1830504_1831758_+	PRK09528, lacY, galactoside permease; Reviewed
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	8	3670543-3670794	1	PILER-CR	no		DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Orphan	TTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA,NA|180aa|down_1|NZ_CP024260.1_3672301_3672841_-	NA|158aa|up_9|NZ_CP024260.1_3660153_3660627_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|NZ_CP024260.1_3660649_3661930_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP024260.1_3662178_3662988_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP024260.1_3663042_3663507_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP024260.1_3663506_3663842_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP024260.1_3663990_3665562_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|433aa|up_3|NZ_CP024260.1_3665936_3667235_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP024260.1_3667250_3668021_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP024260.1_3668050_3668941_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP024260.1_3669037_3670183_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP024260.1_3671092_3672280_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP024260.1_3672301_3672841_-	NA	NA|115aa|down_2|NZ_CP024260.1_3673096_3673441_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP024260.1_3673629_3674568_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP024260.1_3674666_3675656_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP024260.1_3675677_3677009_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP024260.1_3677034_3678243_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP024260.1_3678276_3680571_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP024260.1_3680584_3680974_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP024260.1_3681045_3682410_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	9	4066047-4066727	2,8,1,9,2	PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder,CRT	no	cas3	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,29,29,28	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	11,9,9,9,9	11	Unclear	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA,NA	NA|919aa|up_9|NZ_CP024260.1_4052639_4055396_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP024260.1_4055452_4056754_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP024260.1_4056801_4059036_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP024260.1_4059113_4059362_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP024260.1_4059361_4059697_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP024260.1_4059767_4060559_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP024260.1_4060786_4062424_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP024260.1_4062511_4063810_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP024260.1_4063869_4064742_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP024260.1_4065035_4065707_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP024260.1_4067365_4068844_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP024260.1_4068870_4070148_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP024260.1_4070467_4071253_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP024260.1_4071322_4072777_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP024260.1_4072870_4074208_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP024260.1_4074185_4074965_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP024260.1_4074961_4075822_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP024260.1_4075969_4076545_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP024260.1_4076561_4076822_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP024260.1_4076812_4078084_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	10	4092619-4092891	3,10,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas1,cas2	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	2,4,4	4	TypeI-E	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA,NA	NA|122aa|up_9|NZ_CP024260.1_4078161_4078527_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_8|NZ_CP024260.1_4078842_4080642_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_7|NZ_CP024260.1_4080641_4082354_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_6|NZ_CP024260.1_4082427_4083162_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_5|NZ_CP024260.1_4083520_4086187_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|451aa|up_4|NZ_CP024260.1_4086601_4087954_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_3|NZ_CP024260.1_4088102_4088585_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_2|NZ_CP024260.1_4088597_4089689_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP024260.1_4091309_4092227_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP024260.1_4092228_4092513_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP024260.1_4092911_4093949_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP024260.1_4094200_4095109_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP024260.1_4095110_4096538_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP024260.1_4096537_4097143_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP024260.1_4097192_4097516_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP024260.1_4097709_4098021_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP024260.1_4098039_4098750_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP024260.1_4098749_4099229_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP024260.1_4099225_4100275_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP024260.1_4100255_4101017_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002741335.1_ASM274133v1	NZ_CP024260	Escherichia coli strain F5656C1 chromosome, complete genome	11	4606852-4606969	11	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,WYL,RT,DinG,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2	NA,NA	NA|268aa|up_9|NZ_CP024260.1_4595488_4596292_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_CP024260.1_4596332_4597235_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP024260.1_4597427_4598618_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP024260.1_4598614_4599874_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP024260.1_4599863_4601492_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP024260.1_4601764_4603123_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP024260.1_4603127_4604204_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP024260.1_4604666_4605317_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP024260.1_4605370_4605625_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP024260.1_4605624_4606755_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP024260.1_4606988_4609274_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP024260.1_4609969_4613722_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP024260.1_4613849_4614572_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP024260.1_4614718_4617346_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|208aa|down_4|NZ_CP024260.1_4619179_4619803_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_5|NZ_CP024260.1_4619946_4624341_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_6|NZ_CP024260.1_4624341_4625991_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP024260.1_4625995_4626772_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP024260.1_4626845_4628030_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP024260.1_4628060_4629383_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
