assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002741375.1_ASM274137v1	NZ_CP024282	Escherichia albertii strain 2014C-4356 chromosome, complete genome	1	107803-107915	1	PILER-CR	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	Orphan	TTTTCTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT,WYL	NA|34aa|up_7|NZ_CP024282.1_102116_102218_-,NA|50aa|up_3|NZ_CP024282.1_105741_105891_-,NA|101aa|up_1|NZ_CP024282.1_106338_106641_-,NA|354aa|down_2|NZ_CP024282.1_110032_111094_+	NA|57aa|up_9|NZ_CP024282.1_101494_101665_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_8|NZ_CP024282.1_101664_102120_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_7|NZ_CP024282.1_102116_102218_-	NA	NA|266aa|up_6|NZ_CP024282.1_102334_103132_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|184aa|up_5|NZ_CP024282.1_103141_103693_-	PRK09818, PRK09818, kinase inhibitor	NA|509aa|up_4|NZ_CP024282.1_104157_105684_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|50aa|up_3|NZ_CP024282.1_105741_105891_-	NA	NA|111aa|up_2|NZ_CP024282.1_105938_106271_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|101aa|up_1|NZ_CP024282.1_106338_106641_-	NA	NA|234aa|up_0|NZ_CP024282.1_106637_107339_-	pfam06992, Phage_lambda_P, Replication protein P	NA|76aa|down_0|NZ_CP024282.1_108921_109149_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|231aa|down_1|NZ_CP024282.1_109259_109952_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|354aa|down_2|NZ_CP024282.1_110032_111094_+	NA	NA|126aa|down_3|NZ_CP024282.1_111071_111449_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|97aa|down_4|NZ_CP024282.1_111840_112131_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_5|NZ_CP024282.1_112206_112503_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_6|NZ_CP024282.1_112508_113294_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_7|NZ_CP024282.1_113290_113971_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_8|NZ_CP024282.1_113967_114150_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|62aa|down_9|NZ_CP024282.1_114122_114308_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)
GCF_002741375.1_ASM274137v1	NZ_CP024282	Escherichia albertii strain 2014C-4356 chromosome, complete genome	2	153940-154023	1	CRISPRCasFinder	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	Orphan	CGCATCTTATCCGGCCTACGGGT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT,WYL	NA|408aa|up_9|NZ_CP024282.1_140337_141561_+,NA	NA|408aa|up_9|NZ_CP024282.1_140337_141561_+	NA	NA|136aa|up_8|NZ_CP024282.1_141561_141969_-	PRK10227, PRK10227, HTH-type transcriptional regulator CueR	NA|431aa|up_7|NZ_CP024282.1_142149_143442_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|311aa|up_6|NZ_CP024282.1_143444_144377_-	PRK12356, PRK12356, glutaminase; Reviewed	NA|834aa|up_5|NZ_CP024282.1_144638_147140_+	PRK10671, copA, copper-exporting P-type ATPase CopA	NA|265aa|up_4|NZ_CP024282.1_147405_148200_+	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown]	NA|160aa|up_3|NZ_CP024282.1_148402_148882_+	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA|551aa|up_2|NZ_CP024282.1_148918_150571_-	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	NA|402aa|up_1|NZ_CP024282.1_150786_151992_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|559aa|up_0|NZ_CP024282.1_152230_153907_+	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|435aa|down_0|NZ_CP024282.1_154046_155351_-	PRK15074, PRK15074, inosine/guanosine kinase; Provisional	NA|323aa|down_1|NZ_CP024282.1_155502_156471_+	PRK10162, PRK10162, acetyl esterase	NA|321aa|down_2|NZ_CP024282.1_156445_157408_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|215aa|down_3|NZ_CP024282.1_157539_158184_-	PRK00279, adk, adenylate kinase; Reviewed	NA|625aa|down_4|NZ_CP024282.1_158403_160278_-	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|202aa|down_5|NZ_CP024282.1_160388_160994_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|110aa|down_6|NZ_CP024282.1_160993_161323_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|641aa|down_7|NZ_CP024282.1_161375_163298_-	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|184aa|down_8|NZ_CP024282.1_163426_163978_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|129aa|down_9|NZ_CP024282.1_164129_164516_-	PRK10527, PRK10527, DUF454 family protein
GCF_002741375.1_ASM274137v1	NZ_CP024282	Escherichia albertii strain 2014C-4356 chromosome, complete genome	3	2526219-2526857	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	Orphan	GGGTTCCCCGCGTTAGCGGGGATAAACC,GGGTTCCCCGCGTTAGCGGGGATAAACCG,GGGTTCCCCGCGTTAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT,WYL	NA,NA	NA|919aa|up_9|NZ_CP024282.1_2510686_2513443_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP024282.1_2513499_2514801_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP024282.1_2514848_2517083_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_6|NZ_CP024282.1_2517345_2518137_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_CP024282.1_2518364_2520002_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_CP024282.1_2520089_2521388_+	PRK00077, eno, enolase; Provisional	NA|307aa|up_3|NZ_CP024282.1_2521447_2522368_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|301aa|up_2|NZ_CP024282.1_2523518_2524421_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP024282.1_2524434_2525037_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP024282.1_2525208_2525880_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP024282.1_2526903_2528382_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP024282.1_2528408_2529686_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP024282.1_2530004_2530790_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP024282.1_2530859_2532314_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP024282.1_2532407_2533745_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP024282.1_2533722_2534502_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP024282.1_2534498_2535359_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP024282.1_2535530_2536106_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP024282.1_2536122_2536383_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|122aa|down_9|NZ_CP024282.1_2537722_2538088_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_002741375.1_ASM274137v1	NZ_CP024282	Escherichia albertii strain 2014C-4356 chromosome, complete genome	4	2553420-2553937	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	1	1	2553632-2553664	NZ_CP024282.1_3569058-3569090	I-E:I-E:I-E	7,8,8	8	TypeI-E	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT,WYL	NA,NA	NA|51aa|up_9|NZ_CP024282.1_2543093_2543246_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NZ_CP024282.1_2543438_2544551_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|898aa|up_7|NZ_CP024282.1_2544767_2547461_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP024282.1_2547558_2549121_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|NZ_CP024282.1_2549117_2549657_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP024282.1_2549668_2550724_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP024282.1_2550734_2551481_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP024282.1_2551462_2552113_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP024282.1_2552109_2553033_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP024282.1_2553029_2553323_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP024282.1_2553956_2554994_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP024282.1_2555246_2556155_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP024282.1_2556156_2557584_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP024282.1_2557583_2558189_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP024282.1_2558238_2558562_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP024282.1_2558755_2559067_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP024282.1_2559085_2559796_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP024282.1_2559795_2560275_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP024282.1_2560271_2561321_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP024282.1_2561301_2562063_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002741375.1_ASM274137v1	NZ_CP024282	Escherichia albertii strain 2014C-4356 chromosome, complete genome	5	2977966-2978104	4	CRISPRCasFinder	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	Orphan	CAGGTTACACCCAGGTCGGATAAGGCGTTCACGCCGCATCCGACA	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT,WYL	NA,NA	NA|163aa|up_9|NZ_CP024282.1_2970611_2971100_+	PRK15287, PRK15287, fimbrial minor subunit StfF	NA|180aa|up_8|NZ_CP024282.1_2971096_2971636_+	PRK15288, PRK15288, putative minor fimbrial subunit StfG; Provisional	NA|280aa|up_7|NZ_CP024282.1_2971637_2972477_+	pfam11245, DUF2544, Protein of unknown function (DUF2544)	NA|184aa|up_6|NZ_CP024282.1_2972660_2973212_-	PRK04946, PRK04946, endonuclease SmrB	NA|311aa|up_5|NZ_CP024282.1_2973376_2974309_+	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|362aa|up_4|NZ_CP024282.1_2974343_2975429_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|275aa|up_3|NZ_CP024282.1_2975432_2976257_+	PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed	NA|270aa|up_2|NZ_CP024282.1_2976256_2977066_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|183aa|up_1|NZ_CP024282.1_2977065_2977614_+	COG3101, COG3101, Uncharacterized protein conserved in bacteria [Function unknown]	NA|96aa|up_0|NZ_CP024282.1_2977647_2977935_+	pfam08891, YfcL, YfcL protein	NA|669aa|down_0|NZ_CP024282.1_2978122_2980129_-	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA|407aa|down_1|NZ_CP024282.1_2980287_2981508_+	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|393aa|down_2|NZ_CP024282.1_2981782_2982961_+	PRK12382, PRK12382, putative transporter; Provisional	NA|328aa|down_3|NZ_CP024282.1_2982957_2983941_-	PRK10715, flk, flagella biosynthesis regulator Flk	NA|379aa|down_4|NZ_CP024282.1_2984039_2985176_+	PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional	NA|338aa|down_5|NZ_CP024282.1_2985241_2986255_+	PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional	NA|271aa|down_6|NZ_CP024282.1_2986254_2987067_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|220aa|down_7|NZ_CP024282.1_2987093_2987753_+	PRK10847, PRK10847, DedA family protein	NA|305aa|down_8|NZ_CP024282.1_2987908_2988823_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|423aa|down_9|NZ_CP024282.1_2988892_2990161_+	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
GCF_002741375.1_ASM274137v1	NZ_CP024282	Escherichia albertii strain 2014C-4356 chromosome, complete genome	6	3745236-3745359	5	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT,WYL	NA,NA|30aa|down_7|NZ_CP024282.1_3754257_3754347_+	NA|79aa|up_9|NZ_CP024282.1_3735823_3736060_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP024282.1_3736370_3737783_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP024282.1_3738326_3738536_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP024282.1_3738983_3739610_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NZ_CP024282.1_3739630_3741733_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|217aa|up_4|NZ_CP024282.1_3741745_3742396_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|NZ_CP024282.1_3742459_3743128_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|NZ_CP024282.1_3743124_3743910_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_1|NZ_CP024282.1_3743913_3744726_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|102aa|up_0|NZ_CP024282.1_3744789_3745095_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024282.1_3745668_3746925_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024282.1_3746964_3748338_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024282.1_3748553_3749195_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024282.1_3749240_3750389_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024282.1_3750680_3751892_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024282.1_3752004_3752937_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024282.1_3752933_3753959_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024282.1_3754257_3754347_+	NA	NA|194aa|down_8|NZ_CP024282.1_3754638_3755220_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|276aa|down_9|NZ_CP024282.1_3755347_3756175_-	pfam00877, NLPC_P60, NlpC/P60 family
