assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002741725.1_ASM274172v1	NZ_CP024315	Rhodococcus ruber strain P14 chromosome, complete genome	1	1178247-1178323	1	CRISPRCasFinder	no	DEDDh	DinG,c2c9_V-U4,DEDDh,cas4,WYL,csa3,Cas9_archaeal,cas3	Unclear	CCGCCGAGTCCGCCGCCGCGATC	23	0	0	NA	NA	NA	1	1	Orphan	DinG,c2c9_V-U4,DEDDh,cas4,WYL,csa3,Cas9_archaeal,cas3	NA|136aa|up_7|NZ_CP024315.1_1169036_1169444_-,NA|72aa|down_3|NZ_CP024315.1_1181654_1181870_-	NA|92aa|up_9|NZ_CP024315.1_1167502_1167778_+	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|349aa|up_8|NZ_CP024315.1_1167897_1168944_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|136aa|up_7|NZ_CP024315.1_1169036_1169444_-	NA	NA|204aa|up_6|NZ_CP024315.1_1169620_1170232_+	COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]	NA|278aa|up_5|NZ_CP024315.1_1170331_1171165_+	COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion]	NA|376aa|up_4|NZ_CP024315.1_1171161_1172289_+	COG0723, QcrA, Rieske Fe-S protein [Energy production and conversion]	NA|550aa|up_3|NZ_CP024315.1_1172285_1173935_+	pfam13631, Cytochrom_B_N_2, Cytochrome b(N-terminal)/b6/petB	NA|292aa|up_2|NZ_CP024315.1_1174073_1174949_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|139aa|up_1|NZ_CP024315.1_1175530_1175947_-	pfam12270, Cyt_c_ox_IV, Cytochrome c oxidase subunit IV	NA|355aa|up_0|NZ_CP024315.1_1175978_1177043_-	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|324aa|down_0|NZ_CP024315.1_1179304_1180276_-	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|117aa|down_1|NZ_CP024315.1_1180389_1180740_-	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|222aa|down_2|NZ_CP024315.1_1180885_1181551_+	pfam11241, DUF3043, Protein of unknown function (DUF3043)	NA|72aa|down_3|NZ_CP024315.1_1181654_1181870_-	NA	NA|368aa|down_4|NZ_CP024315.1_1182004_1183108_+	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|251aa|down_5|NZ_CP024315.1_1183107_1183860_+	PRK00235, cobS, cobalamin synthase; Reviewed	NA|368aa|down_6|NZ_CP024315.1_1183875_1184979_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|367aa|down_7|NZ_CP024315.1_1185012_1186113_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|503aa|down_8|NZ_CP024315.1_1186187_1187696_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|584aa|down_9|NZ_CP024315.1_1187953_1189705_+	TIGR02927, putative_dihydrolipoamide_acyltransferase, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
GCF_002741725.1_ASM274172v1	NZ_CP024315	Rhodococcus ruber strain P14 chromosome, complete genome	2	2269727-2269804	2	CRISPRCasFinder	no		DinG,c2c9_V-U4,DEDDh,cas4,WYL,csa3,Cas9_archaeal,cas3	Orphan	CCCGCACCCAGATCCACCGCACCG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,c2c9_V-U4,DEDDh,cas4,WYL,csa3,Cas9_archaeal,cas3	NA|127aa|up_8|NZ_CP024315.1_2259254_2259635_+,NA|166aa|up_3|NZ_CP024315.1_2264094_2264592_+,NA|443aa|down_3|NZ_CP024315.1_2277513_2278842_+,NA|434aa|down_4|NZ_CP024315.1_2278961_2280263_+,NA|232aa|down_5|NZ_CP024315.1_2280647_2281343_-	NA|211aa|up_9|NZ_CP024315.1_2258472_2259105_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|127aa|up_8|NZ_CP024315.1_2259254_2259635_+	NA	NA|136aa|up_7|NZ_CP024315.1_2259747_2260155_-	cd01279, HTH_HspR-like, Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators	NA|394aa|up_6|NZ_CP024315.1_2260154_2261336_-	PRK14279, PRK14279, molecular chaperone DnaJ	NA|215aa|up_5|NZ_CP024315.1_2261369_2262014_-	PRK14164, PRK14164, heat shock protein GrpE; Provisional	NA|615aa|up_4|NZ_CP024315.1_2262010_2263855_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|166aa|up_3|NZ_CP024315.1_2264094_2264592_+	NA	NA|303aa|up_2|NZ_CP024315.1_2264760_2265669_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|484aa|up_1|NZ_CP024315.1_2265742_2267194_-	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|609aa|up_0|NZ_CP024315.1_2267190_2269017_-	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|598aa|down_0|NZ_CP024315.1_2271659_2273453_+	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family	NA|823aa|down_1|NZ_CP024315.1_2273456_2275925_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|502aa|down_2|NZ_CP024315.1_2275915_2277421_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|443aa|down_3|NZ_CP024315.1_2277513_2278842_+	NA	NA|434aa|down_4|NZ_CP024315.1_2278961_2280263_+	NA	NA|232aa|down_5|NZ_CP024315.1_2280647_2281343_-	NA	NA|1152aa|down_6|NZ_CP024315.1_2281825_2285281_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|315aa|down_7|NZ_CP024315.1_2285414_2286359_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|384aa|down_8|NZ_CP024315.1_2286525_2287677_-	cd03512, Alkane-hydroxylase, Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases	NA|68aa|down_9|NZ_CP024315.1_2287874_2288078_-	COG1278, CspC, Cold shock proteins [Transcription]
GCF_002741725.1_ASM274172v1	NZ_CP024315	Rhodococcus ruber strain P14 chromosome, complete genome	3	3285798-3285894	3	CRISPRCasFinder	no		DinG,c2c9_V-U4,DEDDh,cas4,WYL,csa3,Cas9_archaeal,cas3	Orphan	GCGCGGTTCAGCCGGCGCGCACAGCGCGGT	30	0	0	NA	NA	NA	1	1	Orphan	DinG,c2c9_V-U4,DEDDh,cas4,WYL,csa3,Cas9_archaeal,cas3	NA,NA	NA|247aa|up_9|NZ_CP024315.1_3279920_3280661_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|207aa|up_8|NZ_CP024315.1_3280742_3281363_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|234aa|up_7|NZ_CP024315.1_3281371_3282073_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|252aa|up_6|NZ_CP024315.1_3282069_3282825_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|66aa|up_5|NZ_CP024315.1_3282998_3283196_+	pfam04324, Fer2_BFD, BFD-like [2Fe-2S] binding domain	NA|159aa|up_4|NZ_CP024315.1_3283241_3283718_+	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|155aa|up_3|NZ_CP024315.1_3283714_3284179_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|154aa|up_2|NZ_CP024315.1_3284224_3284686_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|97aa|up_1|NZ_CP024315.1_3284703_3284994_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|260aa|up_0|NZ_CP024315.1_3285017_3285797_+	TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific	NA|174aa|down_0|NZ_CP024315.1_3286644_3287166_+	pfam09350, DUF1992, Domain of unknown function (DUF1992)	NA|303aa|down_1|NZ_CP024315.1_3287399_3288308_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|226aa|down_2|NZ_CP024315.1_3288350_3289028_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|482aa|down_3|NZ_CP024315.1_3289123_3290569_+	COG5337, CotH, Spore coat assembly protein [Cell envelope biogenesis, outer membrane]	NA|194aa|down_4|NZ_CP024315.1_3290819_3291401_+	pfam13671, AAA_33, AAA domain	NA|139aa|down_5|NZ_CP024315.1_3291628_3292045_+	PRK09648, PRK09648, RNA polymerase sigma factor ShbA	NA|247aa|down_6|NZ_CP024315.1_3292252_3292993_+	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein	NA|392aa|down_7|NZ_CP024315.1_3293091_3294267_+	pfam13191, AAA_16, AAA ATPase domain	NA|395aa|down_8|NZ_CP024315.1_3294272_3295457_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|488aa|down_9|NZ_CP024315.1_3295625_3297089_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated
GCF_002741725.1_ASM274172v1	NZ_CP024315	Rhodococcus ruber strain P14 chromosome, complete genome	4	3839860-3839952	4	CRISPRCasFinder	no		DinG,c2c9_V-U4,DEDDh,cas4,WYL,csa3,Cas9_archaeal,cas3	Orphan	GTCGCTGGGCGGGTAGCCCTCAG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,c2c9_V-U4,DEDDh,cas4,WYL,csa3,Cas9_archaeal,cas3	NA|184aa|up_9|NZ_CP024315.1_3829981_3830533_+,NA|76aa|up_8|NZ_CP024315.1_3830609_3830837_+,NA|154aa|up_7|NZ_CP024315.1_3830908_3831370_+,NA|504aa|up_6|NZ_CP024315.1_3831507_3833019_+,NA|106aa|down_7|NZ_CP024315.1_3847439_3847757_-	NA|184aa|up_9|NZ_CP024315.1_3829981_3830533_+	NA	NA|76aa|up_8|NZ_CP024315.1_3830609_3830837_+	NA	NA|154aa|up_7|NZ_CP024315.1_3830908_3831370_+	NA	NA|504aa|up_6|NZ_CP024315.1_3831507_3833019_+	NA	NA|453aa|up_5|NZ_CP024315.1_3833015_3834374_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|553aa|up_4|NZ_CP024315.1_3834337_3835996_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|274aa|up_3|NZ_CP024315.1_3836099_3836921_-	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|296aa|up_2|NZ_CP024315.1_3837734_3838622_-	cd08826, SPFH_eoslipins_u1, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|125aa|up_1|NZ_CP024315.1_3838813_3839188_+	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|211aa|up_0|NZ_CP024315.1_3839187_3839820_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|101aa|down_0|NZ_CP024315.1_3839971_3840274_-	cd10148, CsoR-like_DUF156, Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156	NA|460aa|down_1|NZ_CP024315.1_3840402_3841782_+	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|257aa|down_2|NZ_CP024315.1_3841918_3842689_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|796aa|down_3|NZ_CP024315.1_3842728_3845116_-	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]	NA|150aa|down_4|NZ_CP024315.1_3845177_3845627_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|137aa|down_5|NZ_CP024315.1_3845784_3846195_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|303aa|down_6|NZ_CP024315.1_3846417_3847326_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|106aa|down_7|NZ_CP024315.1_3847439_3847757_-	NA	NA|210aa|down_8|NZ_CP024315.1_3847956_3848586_+	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|354aa|down_9|NZ_CP024315.1_3848759_3849821_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins
GCF_002741725.1_ASM274172v1	NZ_CP024315	Rhodococcus ruber strain P14 chromosome, complete genome	5	4035833-4035914	5	CRISPRCasFinder	no		DinG,c2c9_V-U4,DEDDh,cas4,WYL,csa3,Cas9_archaeal,cas3	Orphan	ACGCGCGCAACTCGCACCGACGC	23	0	0	NA	NA	NA	1	1	Orphan	DinG,c2c9_V-U4,DEDDh,cas4,WYL,csa3,Cas9_archaeal,cas3	NA|151aa|up_4|NZ_CP024315.1_4031685_4032138_+,NA|206aa|up_1|NZ_CP024315.1_4034669_4035287_+,NA|229aa|down_0|NZ_CP024315.1_4036027_4036714_+	NA|252aa|up_9|NZ_CP024315.1_4023925_4024681_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|474aa|up_8|NZ_CP024315.1_4024677_4026099_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|502aa|up_7|NZ_CP024315.1_4026545_4028051_+	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins	NA|494aa|up_6|NZ_CP024315.1_4028255_4029737_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|649aa|up_5|NZ_CP024315.1_4029733_4031680_+	PRK11504, tynA, primary-amine oxidase	NA|151aa|up_4|NZ_CP024315.1_4031685_4032138_+	NA	NA|229aa|up_3|NZ_CP024315.1_4032683_4033370_+	pfam08237, PE-PPE, PE-PPE domain	NA|405aa|up_2|NZ_CP024315.1_4033369_4034584_+	pfam02163, Peptidase_M50, Peptidase family M50	NA|206aa|up_1|NZ_CP024315.1_4034669_4035287_+	NA	NA|76aa|up_0|NZ_CP024315.1_4035286_4035514_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|229aa|down_0|NZ_CP024315.1_4036027_4036714_+	NA	NA|645aa|down_1|NZ_CP024315.1_4036758_4038693_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|221aa|down_2|NZ_CP024315.1_4038677_4039340_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|405aa|down_3|NZ_CP024315.1_4039489_4040704_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|717aa|down_4|NZ_CP024315.1_4040732_4042883_+	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|345aa|down_5|NZ_CP024315.1_4043003_4044038_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|434aa|down_6|NZ_CP024315.1_4044076_4045378_-	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|478aa|down_7|NZ_CP024315.1_4045374_4046808_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|145aa|down_8|NZ_CP024315.1_4046944_4047379_+	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport	NA|253aa|down_9|NZ_CP024315.1_4047375_4048134_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
