assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002741905.1_ASM274190v1	NZ_CP024168	Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN070643 chromosome, complete genome	1	616964-617064	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|448aa|up_9|NZ_CP024168.1_603042_604386_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP024168.1_605013_605466_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP024168.1_605493_606996_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP024168.1_607020_609699_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP024168.1_609919_610321_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP024168.1_610320_611265_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP024168.1_611415_611685_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP024168.1_611926_614062_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP024168.1_614171_615056_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP024168.1_615161_615242_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP024168.1_617277_618522_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|down_1|NZ_CP024168.1_618612_619620_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_2|NZ_CP024168.1_619796_620693_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_3|NZ_CP024168.1_620683_621679_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_4|NZ_CP024168.1_621895_622420_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_5|NZ_CP024168.1_622413_622917_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_6|NZ_CP024168.1_622903_623221_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_7|NZ_CP024168.1_623258_623702_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_8|NZ_CP024168.1_623681_624200_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_9|NZ_CP024168.1_624330_624966_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCF_002741905.1_ASM274190v1	NZ_CP024168	Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN070643 chromosome, complete genome	2	1028108-1029539	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	22,23,23	23	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|344aa|up_9|NZ_CP024168.1_1015569_1016601_-,NA	NA|344aa|up_9|NZ_CP024168.1_1015569_1016601_-	NA	NA|179aa|up_8|NZ_CP024168.1_1016655_1017192_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_7|NZ_CP024168.1_1017188_1017659_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_6|NZ_CP024168.1_1017673_1018180_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_5|NZ_CP024168.1_1018199_1018973_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|196aa|up_4|NZ_CP024168.1_1021763_1022351_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP024168.1_1022957_1023758_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP024168.1_1023985_1025623_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP024168.1_1025705_1027004_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP024168.1_1027139_1027811_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP024168.1_1029636_1030434_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP024168.1_1030521_1030884_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP024168.1_1031307_1033107_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP024168.1_1033106_1034819_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP024168.1_1034973_1035708_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP024168.1_1035795_1036749_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP024168.1_1037132_1039832_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP024168.1_1040189_1041725_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP024168.1_1041741_1042344_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP024168.1_1042366_1043425_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_002741905.1_ASM274190v1	NZ_CP024168	Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN070643 chromosome, complete genome	3	1046162-1050034	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,63,63	63	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP024168.1_1034973_1035708_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP024168.1_1035795_1036749_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP024168.1_1037132_1039832_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP024168.1_1040189_1041725_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP024168.1_1041741_1042344_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP024168.1_1042366_1043425_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP024168.1_1043434_1044160_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP024168.1_1044159_1044864_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP024168.1_1044863_1045781_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP024168.1_1045783_1046077_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP024168.1_1050048_1051095_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP024168.1_1051345_1052254_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP024168.1_1052263_1053703_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP024168.1_1053689_1054295_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP024168.1_1054345_1054669_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP024168.1_1054859_1055171_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP024168.1_1055189_1055900_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP024168.1_1055899_1056379_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP024168.1_1056375_1057425_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP024168.1_1057405_1058167_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002741905.1_ASM274190v1	NZ_CP024168	Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN070643 chromosome, complete genome	4	4790581-4790720	3	PILER-CR	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|514aa|up_9|NZ_CP024168.1_4777074_4778616_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|288aa|up_8|NZ_CP024168.1_4778666_4779530_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|461aa|up_7|NZ_CP024168.1_4779556_4780939_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|140aa|up_6|NZ_CP024168.1_4780959_4781379_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|233aa|up_5|NZ_CP024168.1_4781608_4782307_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|457aa|up_4|NZ_CP024168.1_4782626_4783997_+	PRK09451, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|610aa|up_3|NZ_CP024168.1_4784185_4786015_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|586aa|up_2|NZ_CP024168.1_4786165_4787923_-	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only]	NA|239aa|up_1|NZ_CP024168.1_4788353_4789070_-	pfam01353, GFP, Green fluorescent protein	NA|220aa|up_0|NZ_CP024168.1_4789722_4790382_+	PRK13757, PRK13757, type A chloramphenicol O-acetyltransferase	NA|458aa|down_0|NZ_CP024168.1_4791533_4792907_+	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|347aa|down_1|NZ_CP024168.1_4793073_4794114_+	PRK10918, PRK10918, phosphate ABC transporter substrate-binding protein PstS	NA|320aa|down_2|NZ_CP024168.1_4794249_4795209_+	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|297aa|down_3|NZ_CP024168.1_4795208_4796099_+	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|258aa|down_4|NZ_CP024168.1_4796185_4796959_+	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB	NA|242aa|down_5|NZ_CP024168.1_4796973_4797699_+	PRK11115, PRK11115, phosphate signaling complex protein PhoU	NA|222aa|down_6|NZ_CP024168.1_4797793_4798459_-	PRK10563, PRK10563, 6-phosphogluconate phosphatase; Provisional	NA|270aa|down_7|NZ_CP024168.1_4798471_4799281_-	pfam14903, WG_beta_rep, WG containing repeat	NA|446aa|down_8|NZ_CP024168.1_4799486_4800824_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|195aa|down_9|NZ_CP024168.1_4800868_4801453_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]
