assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002749495.1_ASM274949v1	NZ_CP024422	Paracoccus yeei strain TT13 chromosome, complete genome	1	849641-849744	1	CRISPRCasFinder	no		csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	Orphan	AAAGGCCTCGCGCAGAGGCGCGGGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	NA|206aa|up_9|NZ_CP024422.1_838909_839527_-,NA|175aa|up_4|NZ_CP024422.1_844046_844571_-,NA	NA|206aa|up_9|NZ_CP024422.1_838909_839527_-	NA	NA|304aa|up_8|NZ_CP024422.1_839868_840780_-	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|258aa|up_7|NZ_CP024422.1_840943_841717_+	PRK12744, PRK12744, SDR family oxidoreductase	NA|255aa|up_6|NZ_CP024422.1_841801_842566_+	COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]	NA|225aa|up_5|NZ_CP024422.1_842780_843455_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|175aa|up_4|NZ_CP024422.1_844046_844571_-	NA	NA|432aa|up_3|NZ_CP024422.1_844680_845976_-	NF033432, ThioGly_TfuA_rel, TfuA-related McrA-glycine thioamidation protein	NA|387aa|up_2|NZ_CP024422.1_845972_847133_-	pfam02624, YcaO, YcaO cyclodehydratase, ATP-ad Mg2+-binding	NA|165aa|up_1|NZ_CP024422.1_847210_847705_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|589aa|up_0|NZ_CP024422.1_847869_849636_+	cd07302, CHD, cyclase homology domain	NA|515aa|down_0|NZ_CP024422.1_849886_851431_+	cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacylase 1-like protein 2 aminobenzoyl-glutamate utilization protein B subfamily	NA|467aa|down_1|NZ_CP024422.1_851518_852919_-	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|64aa|down_2|NZ_CP024422.1_852944_853136_-	pfam10932, DUF2783, Protein of unknown function (DUF2783)	NA|527aa|down_3|NZ_CP024422.1_853123_854704_-	PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional	NA|320aa|down_4|NZ_CP024422.1_854728_855688_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|119aa|down_5|NZ_CP024422.1_855757_856114_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|433aa|down_6|NZ_CP024422.1_856136_857435_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|484aa|down_7|NZ_CP024422.1_857463_858915_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|346aa|down_8|NZ_CP024422.1_859078_860116_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|148aa|down_9|NZ_CP024422.1_860234_860678_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_002749495.1_ASM274949v1	NZ_CP024422	Paracoccus yeei strain TT13 chromosome, complete genome	2	951365-951729	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	cas3HD	csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	Unclear	CGTTTCGATCCGCGCCCCCGTGAGGGGGCGAC,GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC,GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	32,31,31	0	0	NA	NA	NA:NA:NA	4,5,3	5	Unclear	csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	NA,NA|92aa|down_3|NZ_CP024422.1_961833_962109_+,NA|99aa|down_4|NZ_CP024422.1_962372_962669_-,NA|69aa|down_5|NZ_CP024422.1_962694_962901_-	NA|542aa|up_9|NZ_CP024422.1_939901_941527_-	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases	NA|244aa|up_8|NZ_CP024422.1_941551_942283_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|325aa|up_7|NZ_CP024422.1_942315_943290_-	PRK09512, rbsC, ribose ABC transporter permease protein; Reviewed	NA|501aa|up_6|NZ_CP024422.1_943279_944782_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|302aa|up_5|NZ_CP024422.1_944852_945758_-	cd06321, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	NA|295aa|up_4|NZ_CP024422.1_945859_946744_-	cd06976, cupin_MtlR-like_N, AraC/XylS family transcriptional regulators similar to MtlR, N-terminal cupin domain	NA|487aa|up_3|NZ_CP024422.1_947019_948480_-	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|346aa|up_2|NZ_CP024422.1_948490_949528_-	cd05285, sorbitol_DH, Sorbitol dehydrogenase	NA|306aa|up_1|NZ_CP024422.1_949795_950713_-	pfam09557, DUF2382, Domain of unknown function (DUF2382)	NA|143aa|up_0|NZ_CP024422.1_950732_951161_-	pfam09557, DUF2382, Domain of unknown function (DUF2382)	NA|385aa|down_0|NZ_CP024422.1_952759_953914_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|741aa|down_1|NZ_CP024422.1_954015_956238_+	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|781aa|down_2|NZ_CP024422.1_959494_961837_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|92aa|down_3|NZ_CP024422.1_961833_962109_+	NA	NA|99aa|down_4|NZ_CP024422.1_962372_962669_-	NA	NA|69aa|down_5|NZ_CP024422.1_962694_962901_-	NA	NA|171aa|down_6|NZ_CP024422.1_963053_963566_-	COG3685, COG3685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|483aa|down_7|NZ_CP024422.1_963907_965356_+	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|211aa|down_8|NZ_CP024422.1_965477_966110_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|333aa|down_9|NZ_CP024422.1_966213_967212_+	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold
GCF_002749495.1_ASM274949v1	NZ_CP024422	Paracoccus yeei strain TT13 chromosome, complete genome	3	1712801-1713021	2	CRT	no		csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	Orphan	CCCAGGGAGGAGGNGGGN	18	0	0	NA	NA	NA	5	5	Orphan	csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	NA|116aa|up_9|NZ_CP024422.1_1705381_1705729_+,NA|52aa|up_7|NZ_CP024422.1_1706715_1706871_+,NA|183aa|up_2|NZ_CP024422.1_1710469_1711018_+,NA	NA|116aa|up_9|NZ_CP024422.1_1705381_1705729_+	NA	NA|261aa|up_8|NZ_CP024422.1_1705800_1706583_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|52aa|up_7|NZ_CP024422.1_1706715_1706871_+	NA	NA|278aa|up_6|NZ_CP024422.1_1707030_1707864_+	COG3665, COG3665, Uncharacterized conserved protein [Function unknown]	NA|231aa|up_5|NZ_CP024422.1_1707860_1708553_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|96aa|up_4|NZ_CP024422.1_1708678_1708966_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|495aa|up_3|NZ_CP024422.1_1708962_1710447_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|183aa|up_2|NZ_CP024422.1_1710469_1711018_+	NA	NA|223aa|up_1|NZ_CP024422.1_1711028_1711697_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|259aa|up_0|NZ_CP024422.1_1711642_1712419_-	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|75aa|down_0|NZ_CP024422.1_1713035_1713260_-	pfam06568, DUF1127, Domain of unknown function (DUF1127)	NA|368aa|down_1|NZ_CP024422.1_1713577_1714681_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|169aa|down_2|NZ_CP024422.1_1715331_1715838_+	PRK00326, PRK00326, transcriptional regulator MraZ	NA|324aa|down_3|NZ_CP024422.1_1715838_1716810_+	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA|128aa|down_4|NZ_CP024422.1_1716809_1717193_+	COG5462, COG5462, Predicted secreted (periplasmic) protein [Function unknown]	NA|602aa|down_5|NZ_CP024422.1_1717189_1718995_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|490aa|down_6|NZ_CP024422.1_1719024_1720494_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|462aa|down_7|NZ_CP024422.1_1720490_1721876_+	PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional	NA|361aa|down_8|NZ_CP024422.1_1721875_1722958_+	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|467aa|down_9|NZ_CP024422.1_1723036_1724437_+	PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
GCF_002749495.1_ASM274949v1	NZ_CP024422	Paracoccus yeei strain TT13 chromosome, complete genome	4	2493898-2494230	2,3,3	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	Orphan	CTGTTCCCCGCATGCGCGGGGATGAACCG,CTGTTCCCCGCATGCGCGGGGATGA,CTGTTCCCCGCATGCGCGGGGATGAACCG	29,25,29	1	1	2493988-2494019	NZ_CP024422.1_3334398-3334367	I-E:I-E:I-E	5,5,5	5	Orphan	csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	NA|811aa|up_5|NZ_CP024422.1_2486787_2489220_+,NA|134aa|up_0|NZ_CP024422.1_2492751_2493153_-,NA|51aa|down_4|NZ_CP024422.1_2498578_2498731_+,NA|319aa|down_5|NZ_CP024422.1_2499146_2500103_-,NA|112aa|down_7|NZ_CP024422.1_2502969_2503305_-,NA|64aa|down_8|NZ_CP024422.1_2503431_2503623_-,NA|177aa|down_9|NZ_CP024422.1_2503888_2504419_+	NA|409aa|up_9|NZ_CP024422.1_2472056_2473283_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|313aa|up_8|NZ_CP024422.1_2474117_2475056_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|322aa|up_7|NZ_CP024422.1_2476332_2477298_+	cd08509, PBP2_TmCBP_oligosaccharides_like, The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold	NA|3154aa|up_6|NZ_CP024422.1_2477326_2486788_+	PLN02939, PLN02939, transferase, transferring glycosyl groups	NA|811aa|up_5|NZ_CP024422.1_2486787_2489220_+	NA	NA|311aa|up_4|NZ_CP024422.1_2489246_2490179_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|121aa|up_3|NZ_CP024422.1_2490368_2490731_+	pfam01527, HTH_Tnp_1, Transposase	NA|118aa|up_2|NZ_CP024422.1_2490724_2491078_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|517aa|up_1|NZ_CP024422.1_2491132_2492683_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|134aa|up_0|NZ_CP024422.1_2492751_2493153_-	NA	NA|101aa|down_0|NZ_CP024422.1_2494531_2494834_-	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|100aa|down_1|NZ_CP024422.1_2494869_2495169_-	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|397aa|down_2|NZ_CP024422.1_2495319_2496509_+	pfam13683, rve_3, Integrase core domain	NA|409aa|down_3|NZ_CP024422.1_2497319_2498546_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|51aa|down_4|NZ_CP024422.1_2498578_2498731_+	NA	NA|319aa|down_5|NZ_CP024422.1_2499146_2500103_-	NA	NA|201aa|down_6|NZ_CP024422.1_2501446_2502049_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|112aa|down_7|NZ_CP024422.1_2502969_2503305_-	NA	NA|64aa|down_8|NZ_CP024422.1_2503431_2503623_-	NA	NA|177aa|down_9|NZ_CP024422.1_2503888_2504419_+	NA
GCF_002749495.1_ASM274949v1	NZ_CP024422	Paracoccus yeei strain TT13 chromosome, complete genome	5	2532436-2532547	4	CRISPRCasFinder	no		csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	Orphan	CCCGCCATTTTTCTTCTCGCACGCCCG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	NA|79aa|up_8|NZ_CP024422.1_2525339_2525576_+,NA|178aa|up_7|NZ_CP024422.1_2525572_2526106_+,NA|103aa|up_3|NZ_CP024422.1_2530044_2530353_+,NA|144aa|up_2|NZ_CP024422.1_2530359_2530791_+,NA|362aa|up_1|NZ_CP024422.1_2530790_2531876_+,NA|134aa|up_0|NZ_CP024422.1_2531872_2532274_+,NA|141aa|down_0|NZ_CP024422.1_2532615_2533038_+,NA|255aa|down_1|NZ_CP024422.1_2533067_2533832_+,NA|126aa|down_2|NZ_CP024422.1_2533831_2534209_+,NA|81aa|down_3|NZ_CP024422.1_2534283_2534526_+,NA|733aa|down_4|NZ_CP024422.1_2534529_2536728_+,NA|192aa|down_5|NZ_CP024422.1_2536727_2537303_+,NA|584aa|down_6|NZ_CP024422.1_2537302_2539054_+,NA|267aa|down_7|NZ_CP024422.1_2539046_2539847_+,NA|307aa|down_8|NZ_CP024422.1_2539861_2540782_+	NA|352aa|up_9|NZ_CP024422.1_2523948_2525004_+	pfam13155, Toprim_2, Toprim-like	NA|79aa|up_8|NZ_CP024422.1_2525339_2525576_+	NA	NA|178aa|up_7|NZ_CP024422.1_2525572_2526106_+	NA	NA|479aa|up_6|NZ_CP024422.1_2526105_2527542_+	pfam05136, Phage_portal_2, Phage portal protein, lambda family	NA|669aa|up_5|NZ_CP024422.1_2527568_2529575_+	pfam10124, Mu-like_gpT, Mu-like prophage major head subunit gpT	NA|108aa|up_4|NZ_CP024422.1_2529645_2529969_+	pfam09956, DUF2190, Uncharacterized conserved protein (DUF2190)	NA|103aa|up_3|NZ_CP024422.1_2530044_2530353_+	NA	NA|144aa|up_2|NZ_CP024422.1_2530359_2530791_+	NA	NA|362aa|up_1|NZ_CP024422.1_2530790_2531876_+	NA	NA|134aa|up_0|NZ_CP024422.1_2531872_2532274_+	NA	NA|141aa|down_0|NZ_CP024422.1_2532615_2533038_+	NA	NA|255aa|down_1|NZ_CP024422.1_2533067_2533832_+	NA	NA|126aa|down_2|NZ_CP024422.1_2533831_2534209_+	NA	NA|81aa|down_3|NZ_CP024422.1_2534283_2534526_+	NA	NA|733aa|down_4|NZ_CP024422.1_2534529_2536728_+	NA	NA|192aa|down_5|NZ_CP024422.1_2536727_2537303_+	NA	NA|584aa|down_6|NZ_CP024422.1_2537302_2539054_+	NA	NA|267aa|down_7|NZ_CP024422.1_2539046_2539847_+	NA	NA|307aa|down_8|NZ_CP024422.1_2539861_2540782_+	NA	NA|541aa|down_9|NZ_CP024422.1_2540862_2542485_-	pfam05272, VirE, Virulence-associated protein E
