assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002753655.1_ASM275365v1	NZ_CP024477	Pseudomonas aeruginosa strain 12939 chromosome, complete genome	1	346195-346308	1	CRISPRCasFinder	no		csa3,RT,DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,DinG,WYL,TnsE_C	Orphan	GGCCAAAGAACTGGAGGGCAAGGTATGA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,DinG,WYL,TnsE_C	NA,NA|168aa|down_2|NZ_CP024477.1_350880_351384_-,NA|251aa|down_5|NZ_CP024477.1_353137_353890_-,NA|185aa|down_7|NZ_CP024477.1_354658_355213_-	NA|293aa|up_9|NZ_CP024477.1_333043_333922_-	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase	NA|222aa|up_8|NZ_CP024477.1_334084_334750_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|354aa|up_7|NZ_CP024477.1_334810_335872_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|459aa|up_6|NZ_CP024477.1_336127_337504_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|251aa|up_5|NZ_CP024477.1_337782_338535_+	pfam07722, Peptidase_C26, Peptidase C26	NA|453aa|up_4|NZ_CP024477.1_338575_339934_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|457aa|up_3|NZ_CP024477.1_339999_341370_+	PRK07480, PRK07480, putative aminotransferase; Validated	NA|368aa|up_2|NZ_CP024477.1_341485_342589_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|366aa|up_1|NZ_CP024477.1_343007_344105_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|385aa|up_0|NZ_CP024477.1_344159_345314_+	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|796aa|down_0|NZ_CP024477.1_347351_349739_-	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only]	NA|351aa|down_1|NZ_CP024477.1_349849_350902_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|168aa|down_2|NZ_CP024477.1_350880_351384_-	NA	NA|204aa|down_3|NZ_CP024477.1_351488_352100_-	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs	NA|340aa|down_4|NZ_CP024477.1_352098_353118_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|251aa|down_5|NZ_CP024477.1_353137_353890_-	NA	NA|233aa|down_6|NZ_CP024477.1_353938_354637_+	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	NA|185aa|down_7|NZ_CP024477.1_354658_355213_-	NA	NA|165aa|down_8|NZ_CP024477.1_355478_355973_+	COG1683, COG1683, Uncharacterized conserved protein [Function unknown]	NA|231aa|down_9|NZ_CP024477.1_355977_356670_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
GCF_002753655.1_ASM275365v1	NZ_CP024477	Pseudomonas aeruginosa strain 12939 chromosome, complete genome	2	2833129-2833336	2	CRISPRCasFinder	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,RT,DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,DinG,WYL,TnsE_C	Type I-F	GTTCACTGCCGTATAGGCAGCTAAGAAA	28	0	0	NA	NA	I-F	3	3	TypeI-F	csa3,RT,DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,DinG,WYL,TnsE_C	NA|55aa|up_6|NZ_CP024477.1_2813974_2814139_-,NA|105aa|down_6|NZ_CP024477.1_2843119_2843434_-	NA|725aa|up_9|NZ_CP024477.1_2810563_2812738_+	pfam04632, FUSC, Fusaric acid resistance protein family	NA|70aa|up_8|NZ_CP024477.1_2812727_2812937_+	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|335aa|up_7|NZ_CP024477.1_2812933_2813938_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|55aa|up_6|NZ_CP024477.1_2813974_2814139_-	NA	NA|305aa|up_5|NZ_CP024477.1_2814481_2815396_+	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|338aa|up_4|NZ_CP024477.1_2815571_2816585_+	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|188aa|up_3|NZ_CP024477.1_2816664_2817228_-	PRK07037, PRK07037, extracytoplasmic-function sigma-70 factor; Validated	NA|255aa|up_2|NZ_CP024477.1_2817870_2818635_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|4343aa|up_1|NZ_CP024477.1_2818707_2831736_+	PRK05691, PRK05691, peptide synthase; Validated	NA|171aa|up_0|NZ_CP024477.1_2832221_2832734_-	COG3617, COG3617, Prophage antirepressor [Transcription]	cas6f|188aa|down_0|NZ_CP024477.1_2833459_2834023_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|343aa|down_1|NZ_CP024477.1_2834026_2835055_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|328aa|down_2|NZ_CP024477.1_2835065_2836049_-	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|435aa|down_3|NZ_CP024477.1_2836035_2837340_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1077aa|down_4|NZ_CP024477.1_2837397_2840628_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|325aa|down_5|NZ_CP024477.1_2840624_2841599_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|105aa|down_6|NZ_CP024477.1_2843119_2843434_-	NA	NA|307aa|down_7|NZ_CP024477.1_2843910_2844831_-	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion]	NA|473aa|down_8|NZ_CP024477.1_2844863_2846282_-	pfam03573, OprD, outer membrane porin, OprD family	NA|227aa|down_9|NZ_CP024477.1_2846362_2847043_-	cd01012, YcaC_related, YcaC related amidohydrolases; E
GCF_002753655.1_ASM275365v1	NZ_CP024477	Pseudomonas aeruginosa strain 12939 chromosome, complete genome	3	2841860-2842849	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,RT,DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,DinG,WYL,TnsE_C	Type I-F	TTTCTTAGCTGCCTACACGGCAGTGAAC,TTTCTTAGCTGCCTACACGGCAGTGAAC,TTTCTTAGCTGCCTACACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	16,16,16	16	TypeI-F	csa3,RT,DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,DinG,WYL,TnsE_C	NA,NA|105aa|down_0|NZ_CP024477.1_2843119_2843434_-	NA|188aa|up_9|NZ_CP024477.1_2816664_2817228_-	PRK07037, PRK07037, extracytoplasmic-function sigma-70 factor; Validated	NA|255aa|up_8|NZ_CP024477.1_2817870_2818635_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|4343aa|up_7|NZ_CP024477.1_2818707_2831736_+	PRK05691, PRK05691, peptide synthase; Validated	NA|171aa|up_6|NZ_CP024477.1_2832221_2832734_-	COG3617, COG3617, Prophage antirepressor [Transcription]	cas6f|188aa|up_5|NZ_CP024477.1_2833459_2834023_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|343aa|up_4|NZ_CP024477.1_2834026_2835055_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|328aa|up_3|NZ_CP024477.1_2835065_2836049_-	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|435aa|up_2|NZ_CP024477.1_2836035_2837340_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1077aa|up_1|NZ_CP024477.1_2837397_2840628_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|325aa|up_0|NZ_CP024477.1_2840624_2841599_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|105aa|down_0|NZ_CP024477.1_2843119_2843434_-	NA	NA|307aa|down_1|NZ_CP024477.1_2843910_2844831_-	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion]	NA|473aa|down_2|NZ_CP024477.1_2844863_2846282_-	pfam03573, OprD, outer membrane porin, OprD family	NA|227aa|down_3|NZ_CP024477.1_2846362_2847043_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|287aa|down_4|NZ_CP024477.1_2847141_2848002_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|313aa|down_5|NZ_CP024477.1_2848102_2849041_+	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|142aa|down_6|NZ_CP024477.1_2849562_2849988_+	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|440aa|down_7|NZ_CP024477.1_2849980_2851300_+	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|470aa|down_8|NZ_CP024477.1_2851478_2852888_+	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional	NA|73aa|down_9|NZ_CP024477.1_2852965_2853184_+	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002753655.1_ASM275365v1	NZ_CP024477	Pseudomonas aeruginosa strain 12939 chromosome, complete genome	4	3464946-3465118	2,4	PILER-CR,CRISPRCasFinder	no		csa3,RT,DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,DinG,WYL,TnsE_C	Orphan	ATATCCGCCATGAAACGCCGGCGCAGCGG,TATCCGCCATGAAACGTCGGCGCAGCGG	29,28	2	2	3465052-3465106|3465033-3465090	NZ_CP024477.1_796478-796532|NZ_CP024477.1_796476-796533	NA:NA	2,2	2	Orphan	csa3,RT,DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,DinG,WYL,TnsE_C	NA|227aa|up_8|NZ_CP024477.1_3455237_3455918_+,NA|63aa|up_3|NZ_CP024477.1_3461273_3461462_+,NA|390aa|down_9|NZ_CP024477.1_3474138_3475308_+	NA|516aa|up_9|NZ_CP024477.1_3452948_3454496_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|227aa|up_8|NZ_CP024477.1_3455237_3455918_+	NA	NA|169aa|up_7|NZ_CP024477.1_3456009_3456516_+	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional	NA|317aa|up_6|NZ_CP024477.1_3456512_3457463_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|805aa|up_5|NZ_CP024477.1_3457670_3460085_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|384aa|up_4|NZ_CP024477.1_3460125_3461277_+	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown]	NA|63aa|up_3|NZ_CP024477.1_3461273_3461462_+	NA	NA|404aa|up_2|NZ_CP024477.1_3461463_3462675_+	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters	NA|547aa|up_1|NZ_CP024477.1_3462671_3464312_+	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only]	NA|179aa|up_0|NZ_CP024477.1_3464354_3464891_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|215aa|down_0|NZ_CP024477.1_3465123_3465768_-	COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism]	NA|279aa|down_1|NZ_CP024477.1_3465793_3466630_-	pfam02567, PhzC-PhzF, Phenazine biosynthesis-like protein	NA|628aa|down_2|NZ_CP024477.1_3466643_3468527_-	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|208aa|down_3|NZ_CP024477.1_3468523_3469147_-	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems	NA|406aa|down_4|NZ_CP024477.1_3469143_3470361_-	COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|163aa|down_5|NZ_CP024477.1_3470396_3470885_-	pfam03284, PHZA_PHZB, Phenazine biosynthesis protein A/B	NA|163aa|down_6|NZ_CP024477.1_3470920_3471409_-	pfam03284, PHZA_PHZB, Phenazine biosynthesis protein A/B	NA|238aa|down_7|NZ_CP024477.1_3471890_3472604_-	pfam03472, Autoind_bind, Autoinducer binding domain	NA|256aa|down_8|NZ_CP024477.1_3473365_3474133_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|390aa|down_9|NZ_CP024477.1_3474138_3475308_+	NA
