assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002761095.1_ASM276109v1	NZ_CP018661	Salmonella enterica subsp. enterica serovar Enteritidis strain 95-0621 chromosome, complete genome	1	3257255-3257955	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DinG,DEDDh,WYL,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAAC	27,29,27	0	0	NA	NA	I-E:I-E:I-E	10,11,11	11	TypeI-E	cas3,DinG,DEDDh,WYL,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j	NA,NA	NA|179aa|up_9|NZ_CP018661.1_3245801_3246338_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP018661.1_3246334_3246805_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP018661.1_3246819_3247326_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP018661.1_3247345_3248119_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP018661.1_3248131_3250831_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP018661.1_3250910_3251498_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP018661.1_3252104_3252905_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP018661.1_3253132_3254770_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP018661.1_3254852_3256151_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP018661.1_3256286_3256958_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP018661.1_3258053_3258851_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP018661.1_3258938_3259301_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP018661.1_3259724_3261524_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP018661.1_3261523_3263236_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP018661.1_3263337_3264072_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP018661.1_3264159_3265113_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP018661.1_3265556_3268220_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP018661.1_3268231_3269788_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|down_8|NZ_CP018661.1_3269784_3270339_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP018661.1_3270352_3271411_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_002761095.1_ASM276109v1	NZ_CP018661	Salmonella enterica subsp. enterica serovar Enteritidis strain 95-0621 chromosome, complete genome	2	3274107-3274684	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DinG,DEDDh,WYL,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	cas3,DinG,DEDDh,WYL,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j	NA,NA	NA|245aa|up_9|NZ_CP018661.1_3263337_3264072_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP018661.1_3264159_3265113_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP018661.1_3265556_3268220_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP018661.1_3268231_3269788_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|up_5|NZ_CP018661.1_3269784_3270339_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP018661.1_3270352_3271411_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP018661.1_3271421_3272168_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP018661.1_3272149_3272800_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP018661.1_3272796_3273717_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP018661.1_3273716_3274010_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP018661.1_3274698_3275745_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP018661.1_3275995_3276904_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP018661.1_3276913_3278353_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP018661.1_3278339_3278945_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP018661.1_3278962_3279319_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP018661.1_3279509_3279821_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP018661.1_3279839_3280550_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP018661.1_3280549_3281029_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP018661.1_3281025_3282075_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP018661.1_3282055_3282817_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002761095.1_ASM276109v1	NZ_CP018662	Salmonella enterica subsp. enterica serovar Enteritidis strain 95-0621 plasmid pSE95-0621-1, complete sequence	1	41949-42068	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATAGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j	NA|182aa|up_8|NZ_CP018662.1_37579_38125_-,NA|91aa|up_7|NZ_CP018662.1_38450_38723_-,NA|60aa|up_6|NZ_CP018662.1_38954_39134_-,NA|110aa|up_5|NZ_CP018662.1_39176_39506_-,NA|82aa|up_3|NZ_CP018662.1_39803_40049_-,NA|108aa|up_2|NZ_CP018662.1_40096_40420_-,NA|148aa|down_2|NZ_CP018662.1_44026_44470_+,NA|119aa|down_3|NZ_CP018662.1_44609_44966_+,NA|326aa|down_4|NZ_CP018662.1_44962_45940_-,NA|94aa|down_5|NZ_CP018662.1_45964_46246_-,NA|60aa|down_8|NZ_CP018662.1_48146_48326_-	NA|389aa|up_9|NZ_CP018662.1_36410_37577_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|182aa|up_8|NZ_CP018662.1_37579_38125_-	NA	NA|91aa|up_7|NZ_CP018662.1_38450_38723_-	NA	NA|60aa|up_6|NZ_CP018662.1_38954_39134_-	NA	NA|110aa|up_5|NZ_CP018662.1_39176_39506_-	NA	NA|72aa|up_4|NZ_CP018662.1_39598_39814_-	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|82aa|up_3|NZ_CP018662.1_39803_40049_-	NA	NA|108aa|up_2|NZ_CP018662.1_40096_40420_-	NA	NA|94aa|up_1|NZ_CP018662.1_40565_40847_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP018662.1_40836_41088_-	PRK02854, PRK02854, primosomal protein DnaT	NA|280aa|down_0|NZ_CP018662.1_42320_43160_+	pfam01051, Rep_3, Initiator Replication protein	NA|281aa|down_1|NZ_CP018662.1_43180_44023_+	pfam01051, Rep_3, Initiator Replication protein	NA|148aa|down_2|NZ_CP018662.1_44026_44470_+	NA	NA|119aa|down_3|NZ_CP018662.1_44609_44966_+	NA	NA|326aa|down_4|NZ_CP018662.1_44962_45940_-	NA	NA|94aa|down_5|NZ_CP018662.1_45964_46246_-	NA	NA|221aa|down_6|NZ_CP018662.1_46343_47006_-	PHA02518, PHA02518, ParA-like protein; Provisional	NA|215aa|down_7|NZ_CP018662.1_47386_48031_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|60aa|down_8|NZ_CP018662.1_48146_48326_-	NA	NA|443aa|down_9|NZ_CP018662.1_49752_51081_+	pfam18134, AGS_C, Adenylyl/Guanylyl and SMODS C-terminal sensor domain
