assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002761115.1_ASM276111v1	NZ_CP018633	Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444 chromosome, complete genome	1	3847408-3847492	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	ACCAGATACCATCAGCTCCTTCAGT	25	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14j	NA|207aa|up_3|NZ_CP018633.1_3841647_3842268_-,NA|68aa|down_0|NZ_CP018633.1_3848808_3849012_-,NA|53aa|down_1|NZ_CP018633.1_3850215_3850374_+	NA|530aa|up_9|NZ_CP018633.1_3834977_3836567_+	PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional	NA|115aa|up_8|NZ_CP018633.1_3836570_3836915_-	PRK11835, PRK11835, hypothetical protein; Provisional	NA|397aa|up_7|NZ_CP018633.1_3837305_3838496_-	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter	NA|232aa|up_6|NZ_CP018633.1_3838523_3839219_-	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA	NA|587aa|up_5|NZ_CP018633.1_3839370_3841131_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|95aa|up_4|NZ_CP018633.1_3841255_3841540_+	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|207aa|up_3|NZ_CP018633.1_3841647_3842268_-	NA	NA|336aa|up_2|NZ_CP018633.1_3842295_3843303_-	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|76aa|up_1|NZ_CP018633.1_3843482_3843710_+	PRK13689, PRK13689, hypothetical protein; Provisional	NA|587aa|up_0|NZ_CP018633.1_3843741_3845502_+	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|68aa|down_0|NZ_CP018633.1_3848808_3849012_-	NA	NA|53aa|down_1|NZ_CP018633.1_3850215_3850374_+	NA	NA|68aa|down_2|NZ_CP018633.1_3850403_3850607_+	pfam06183, DinI, DinI-like family	NA|155aa|down_3|NZ_CP018633.1_3850798_3851263_-	pfam09411, PagL, Lipid A 3-O-deacylase (PagL)	NA|216aa|down_4|NZ_CP018633.1_3852090_3852738_+	PRK10403, PRK10403, nitrate/nitrite response regulator protein NarP	NA|348aa|down_5|NZ_CP018633.1_3852781_3853825_-	COG3088, CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]	NA|186aa|down_6|NZ_CP018633.1_3853821_3854379_-	PRK15412, PRK15412, thiol:disulfide interchange protein DsbE; Provisional	NA|644aa|down_7|NZ_CP018633.1_3854375_3856307_-	TIGR00353, Cytochrome_c-type_biogenesis_protein_CcmF, c-type cytochrome biogenesis protein CcmF	NA|160aa|down_8|NZ_CP018633.1_3856303_3856783_-	PRK13150, PRK13150, cytochrome c maturation protein CcmE	NA|71aa|down_9|NZ_CP018633.1_3856779_3856992_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_002761115.1_ASM276111v1	NZ_CP018633	Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444 chromosome, complete genome	2	4507044-4507560	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	TypeI-E	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14j	NA,NA	NA|254aa|up_9|NZ_CP018633.1_4498910_4499672_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP018633.1_4499652_4500702_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP018633.1_4500698_4501178_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP018633.1_4501177_4501888_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP018633.1_4501906_4502218_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP018633.1_4502408_4502765_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP018633.1_4502782_4503388_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP018633.1_4503374_4504814_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP018633.1_4504823_4505732_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP018633.1_4505982_4507029_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP018633.1_4507656_4507950_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP018633.1_4507949_4508870_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP018633.1_4508866_4509517_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP018633.1_4509498_4510245_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP018633.1_4510255_4511314_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|down_5|NZ_CP018633.1_4511327_4511882_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP018633.1_4511878_4513435_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|318aa|down_7|NZ_CP018633.1_4516553_4517507_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_8|NZ_CP018633.1_4517594_4518329_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP018633.1_4518430_4520143_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_002761115.1_ASM276111v1	NZ_CP018633	Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444 chromosome, complete genome	3	4523712-4523985	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	30,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,3	4	TypeI-E	PD-DExK,cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14j	NA,NA|344aa|down_9|NZ_CP018633.1_4535491_4536523_+	cas5|249aa|up_9|NZ_CP018633.1_4509498_4510245_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|up_8|NZ_CP018633.1_4510255_4511314_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|up_7|NZ_CP018633.1_4511327_4511882_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_6|NZ_CP018633.1_4511878_4513435_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|318aa|up_5|NZ_CP018633.1_4516553_4517507_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP018633.1_4517594_4518329_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP018633.1_4518430_4520143_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP018633.1_4520142_4521942_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP018633.1_4522365_4522728_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP018633.1_4522815_4523613_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP018633.1_4524280_4524952_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP018633.1_4525087_4526386_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP018633.1_4526468_4528106_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP018633.1_4528333_4529134_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP018633.1_4529741_4530329_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|258aa|down_5|NZ_CP018633.1_4533119_4533893_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_6|NZ_CP018633.1_4533912_4534419_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_7|NZ_CP018633.1_4534433_4534904_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_8|NZ_CP018633.1_4534900_4535437_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|344aa|down_9|NZ_CP018633.1_4535491_4536523_+	NA
