The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017994	Klebsiella pneumoniae strain P1428, complete genome	5633290	942192	1002867	5633290	integrase,transposase	Bacillus_phage(19.05%)	45	941063:941079	986524:986540
941063:941079	attL	CAACGGGGAGCAGGTCA	NA	NA	NA	NA
WP_035897911.1|942192_943116_+|transposase	IS5 family transposase	transposase	Q1MVF0	Enterobacteria_phage	92.8	6.6e-166
WP_004213594.1|943349_943844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004213592.1|943885_946855_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.3	0.0e+00
WP_000118563.1|947543_948620_-	signal peptidase II	NA	NA	NA	NA	NA
WP_004213585.1|948616_951022_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	46.1	1.0e-141
WP_000405672.1|951107_951542_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_004152084.1|951837_953238_-	copper resistance membrane spanning protein PcoS	NA	W8CYF6	Bacillus_phage	26.3	4.1e-18
WP_001188930.1|953234_953915_-	copper response regulator transcription factor PcoR	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
WP_004213583.1|953969_954899_-	copper resistance inner membrane protein PcoD	NA	NA	NA	NA	NA
WP_000025662.1|954903_955284_-	copper resistance system metallochaperone PcoC	NA	NA	NA	NA	NA
WP_011251290.1|955323_956220_-	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA	NA
WP_004213580.1|956219_958037_-	multicopper oxidase PcoA	NA	NA	NA	NA	NA
WP_001023257.1|958270_958720_+	copper resistance protein	NA	NA	NA	NA	NA
WP_004118669.1|959008_959746_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	41.0	3.6e-13
WP_000843497.1|959779_959977_-	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_004098955.1|960017_962465_-	Ag(+)-translocating P-type ATPase SilP	NA	A0A218MNH6	uncultured_virus	35.8	7.6e-84
WP_000758228.1|962591_963032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004098958.1|963118_966265_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	NA	NA	NA	NA
WP_004213579.1|966275_967568_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA	NA
WP_004213578.1|967681_968044_-	cation efflux system protein CusF	NA	NA	NA	NA	NA
WP_004213577.1|968072_969458_-	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA	NA
WP_004213574.1|969647_970328_+	copper/silver response regulator transcription factor SilR	NA	W8CYM9	Bacillus_phage	35.7	1.3e-30
WP_000555737.1|970320_971796_+	copper/silver sensor histidine kinase SilS	NA	W8CYF6	Bacillus_phage	30.1	1.0e-27
WP_023302802.1|972046_972478_+	silver-binding protein SilE	NA	NA	NA	NA	NA
WP_004213569.1|972621_972972_+	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	53.3	3.2e-20
WP_023302803.1|973358_974267_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_004213565.1|974903_975878_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA	NA
WP_077250520.1|976810_977623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004213560.1|977619_978399_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	89.4	6.0e-51
WP_004213558.1|978543_979473_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	52.4	5.6e-72
WP_077250517.1|979785_979944_+	hypothetical protein	NA	A0A0U2RK18	Escherichia_phage	69.7	2.2e-05
WP_011251294.1|981859_982105_+	molecular chaperone DnaJ	NA	NA	NA	NA	NA
WP_011251296.1|982628_983495_+	ParA family protein	NA	NA	NA	NA	NA
WP_004902347.1|983494_984526_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_004902343.1|984525_984963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004214667.1|987309_988092_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	96.1	3.0e-135
986524:986540	attR	TGACCTGCTCCCCGTTG	NA	NA	NA	NA
WP_004211835.1|990842_991379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004211839.1|993698_994709_-	replication initiation protein	NA	J9Q7H0	Salmonella_phage	53.5	1.1e-86
WP_004211841.1|995438_996605_+	plasmid-partitioning protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.4	2.0e-223
WP_004117790.1|996604_997576_+	ParB/RepB/Spo0J family plasmid partition protein	NA	I3WF22	Macacine_betaherpesvirus	86.9	7.0e-150
WP_004902307.1|998781_998964_-	DUF4113 domain-containing protein	NA	A0A1W6JNT0	Morganella_phage	57.1	9.1e-11
WP_004215130.1|999160_999601_+	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	53.8	4.4e-19
WP_004189161.1|999597_999948_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	63.8	5.2e-39
WP_004902302.1|999978_1001571_+|transposase	IS66-like element ISKox1 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.8	3.2e-176
WP_004213807.1|1001898_1002867_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017994	Klebsiella pneumoniae strain P1428, complete genome	5633290	1249357	1256262	5633290	tRNA	Bacillus_phage(33.33%)	6	NA	NA
WP_004149058.1|1249357_1250836_+	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	8.5e-30
WP_004175198.1|1250832_1251555_+	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
WP_004144192.1|1251873_1253235_+|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	94.8	1.8e-207
WP_002912636.1|1253480_1254374_+	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.8	6.1e-15
WP_004180550.1|1254614_1255388_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	3.9e-26
WP_004180551.1|1255398_1256262_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.5	5.7e-10
>prophage 3
NZ_CP017994	Klebsiella pneumoniae strain P1428, complete genome	5633290	4746588	4756051	5633290	protease	Dickeya_phage(16.67%)	7	NA	NA
WP_002896440.1|4746588_4747704_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
WP_004150848.1|4747700_4749641_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
WP_002896516.1|4749717_4749939_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
WP_002896520.1|4750264_4750582_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
WP_002896522.1|4750612_4752892_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
WP_001040187.1|4753012_4753231_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_012737718.1|4754329_4756051_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
>prophage 4
NZ_CP017994	Klebsiella pneumoniae strain P1428, complete genome	5633290	5005272	5101896	5633290	tRNA,terminase,head,integrase,portal,capsid,transposase,tail,holin	Klebsiella_phage(42.86%)	98	4997107:4997124	5111255:5111272
4997107:4997124	attL	GACGGTGGGGTTTGGCGT	NA	NA	NA	NA
WP_014907834.1|5005272_5005764_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_004176560.1|5005901_5007023_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_015874641.1|5007108_5008575_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
WP_004150807.1|5008574_5009246_-	two-component system response regulator PhoP	NA	NA	NA	NA	NA
WP_004179353.1|5009528_5010335_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_004213084.1|5010418_5010781_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_004176557.1|5010835_5012206_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.3	1.2e-107
WP_004140557.1|5012209_5012851_-	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_004150803.1|5012905_5014012_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_004150802.1|5014068_5014527_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_004150801.1|5014543_5015194_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_004150800.1|5015434_5016685_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
WP_014907831.1|5016802_5017930_-|integrase	tyrosine-type recombinase/integrase	integrase	O21925	Phage_21	58.1	1.7e-118
WP_012542206.1|5017910_5018156_-	excisionase	NA	NA	NA	NA	NA
WP_014907830.1|5018208_5020347_-	exonuclease	NA	S4TNL0	Salmonella_phage	42.9	3.3e-99
WP_021462580.1|5020488_5020833_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_021462581.1|5020875_5021070_-	DUF1482 family protein	NA	NA	NA	NA	NA
WP_012542200.1|5021912_5022302_-	helix-turn-helix domain-containing protein	NA	A0A0M4R5D1	Salmonella_phage	60.2	6.7e-35
WP_012542199.1|5022403_5022619_+	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	57.5	2.0e-17
WP_014907826.1|5022621_5023176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021462582.1|5023227_5024211_+	hypothetical protein	NA	A0A0U2RT81	Escherichia_phage	56.4	3.3e-46
WP_041169042.1|5024203_5024668_+	hypothetical protein	NA	A0A0U2JGJ0	Escherichia_phage	68.9	1.9e-60
WP_021462584.1|5024681_5025122_+	PerC family transcriptional regulator	NA	NA	NA	NA	NA
WP_014907823.1|5025434_5027198_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_048333319.1|5027541_5028903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152765.1|5029903_5031388_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
WP_012542186.1|5031466_5031700_+	DinI family protein	NA	K7PM44	Enterobacteria_phage	71.1	1.7e-25
WP_077260856.1|5031711_5032002_+	hypothetical protein	NA	H6WRY6	Salmonella_phage	56.9	6.1e-17
WP_051017642.1|5032042_5032435_+	DNA-binding protein	NA	K7PHB4	Enterobacterial_phage	36.6	6.1e-12
WP_014907821.1|5032634_5033666_+	DUF968 domain-containing protein	NA	S5MW46	Escherichia_phage	49.3	1.8e-95
WP_014228895.1|5033678_5034023_+	antitermination protein	NA	A0A0P0ZCW0	Stx2-converting_phage	85.0	1.0e-55
WP_020317678.1|5034051_5034921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077260858.1|5034925_5035366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021462597.1|5036376_5036592_+|holin	holin	holin	A5LH82	Enterobacteria_phage	87.3	1.0e-29
WP_023159886.1|5036591_5037089_+	lysozyme	NA	A0A1V0E5Q7	Salmonella_phage	86.4	4.3e-79
WP_041168977.1|5037085_5037436_+	hypothetical protein	NA	A0A0K2FIW3	Enterobacter_phage	37.7	6.0e-11
WP_065888617.1|5038384_5038822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032749552.1|5038860_5039085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041168976.1|5039411_5039774_+	HNH endonuclease	NA	Q6UAS2	Klebsiella_phage	82.5	1.3e-56
WP_014907819.1|5039725_5040049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014907818.1|5040045_5040477_+	hypothetical protein	NA	Q6UAS0	Klebsiella_phage	61.6	1.8e-41
WP_099732369.1|5040725_5041160_+|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	63.4	9.4e-30
WP_012542167.1|5041159_5042881_+|terminase	terminase large subunit	terminase	Q7Y413	Yersinia_phage	57.4	1.1e-190
WP_032418045.1|5042874_5043054_+	hypothetical protein	NA	Q6UAX9	Klebsiella_phage	57.6	4.0e-11
WP_012542166.1|5043053_5044313_+|portal	phage portal protein	portal	Q6UAX8	Klebsiella_phage	90.2	2.8e-223
WP_014907815.1|5044349_5045270_+	S49 family peptidase	NA	Q6UAX7	Klebsiella_phage	88.2	9.6e-149
WP_014228907.1|5045347_5046634_+|capsid	phage major capsid protein	capsid	Q6UAX6	Klebsiella_phage	89.3	4.4e-216
WP_014907814.1|5046692_5046953_+	hypothetical protein	NA	Q6UAX5	Klebsiella_phage	63.9	1.5e-22
WP_041168975.1|5046933_5047251_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q6UAX4	Klebsiella_phage	88.8	2.6e-45
WP_014228910.1|5047247_5047586_+|head,tail	head-tail adaptor protein	head,tail	Q6UAX3	Klebsiella_phage	91.1	5.6e-54
WP_014907812.1|5047566_5047956_+	hypothetical protein	NA	Q6UAX2	Klebsiella_phage	85.3	1.1e-56
WP_017898997.1|5047952_5048354_+	hypothetical protein	NA	Q6UAX1	Klebsiella_phage	94.0	1.7e-62
WP_014228914.1|5048903_5049269_+|tail	phage tail protein	tail	Q6UAW8	Klebsiella_phage	89.3	1.6e-51
WP_014228916.1|5052835_5053174_+|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	89.3	8.3e-58
WP_014907809.1|5053170_5053926_+|tail	phage minor tail protein L	tail	Q6UAW5	Klebsiella_phage	81.3	1.2e-125
WP_014228918.1|5053927_5054638_+	C40 family peptidase	NA	Q6UAW4	Klebsiella_phage	89.8	1.4e-136
WP_021462612.1|5054669_5055020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014228919.1|5055035_5055647_+|tail	tail assembly protein	tail	Q6UAW2	Klebsiella_phage	72.5	5.3e-71
WP_014907807.1|5055709_5068414_+	DUF1983 domain-containing protein	NA	Q6UAW1	Klebsiella_phage	47.0	0.0e+00
WP_014907806.1|5068482_5069910_+|tail	tail fiber domain-containing protein	tail	A0A0P0IDN1	Klebsiella_phage	55.5	3.0e-101
WP_004224164.1|5070332_5071391_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	31.7	2.1e-14
WP_014228923.1|5071745_5072438_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_004892953.1|5073086_5073239_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.0	3.8e-18
WP_004213085.1|5073511_5074225_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004150798.1|5074221_5074614_-	amino acid-binding protein	NA	NA	NA	NA	NA
WP_014907803.1|5074606_5074930_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_004140530.1|5075379_5075607_-	DUF1272 domain-containing protein	NA	NA	NA	NA	NA
WP_004140529.1|5075719_5076913_-	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_032421220.1|5076980_5077316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150795.1|5077535_5077721_+	general stress protein	NA	NA	NA	NA	NA
WP_004140514.1|5078331_5078838_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_004140512.1|5078854_5079742_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_004140511.1|5079797_5081204_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_014907802.1|5081200_5082211_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_004140506.1|5082326_5082524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150791.1|5083090_5083723_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_153244925.1|5083701_5083890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150790.1|5084338_5085025_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_004140497.1|5085335_5086844_-	UbiD family decarboxylase	NA	NA	NA	NA	NA
WP_004150788.1|5086964_5087855_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014907801.1|5087861_5089646_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.1	5.8e-17
WP_004140494.1|5089719_5090928_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_014907800.1|5091230_5092274_+	type II asparaginase	NA	NA	NA	NA	NA
WP_004148038.1|5092935_5093850_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	50.4	1.1e-72
WP_004150783.1|5093939_5094578_+	leucine efflux protein LeuE	NA	NA	NA	NA	NA
WP_004140489.1|5094708_5094972_+	DUF2534 family protein	NA	NA	NA	NA	NA
WP_004140488.1|5095030_5095156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004213093.1|5095273_5095348_-	protein YoaJ	NA	NA	NA	NA	NA
WP_004150782.1|5095347_5095449_-	YoaK family small membrane protein	NA	NA	NA	NA	NA
WP_004176549.1|5095506_5096520_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	29.0	1.9e-12
WP_004176548.1|5096820_5097060_+	DUF333 domain-containing protein	NA	NA	NA	NA	NA
WP_004150779.1|5097049_5097406_-	DUF488 domain-containing protein	NA	NA	NA	NA	NA
WP_004150778.1|5097392_5097902_-	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_014907799.1|5098047_5098740_+	CTP synthase	NA	NA	NA	NA	NA
WP_015874675.1|5098771_5099956_-	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_002901073.1|5100056_5100848_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002901080.1|5100831_5101278_-	DUF441 domain-containing protein	NA	NA	NA	NA	NA
WP_002901088.1|5101395_5101896_-|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
5111255:5111272	attR	GACGGTGGGGTTTGGCGT	NA	NA	NA	NA
>prophage 5
NZ_CP017994	Klebsiella pneumoniae strain P1428, complete genome	5633290	5500150	5511037	5633290		Escherichia_phage(87.5%)	9	NA	NA
WP_002210516.1|5500150_5500771_-	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
WP_004224682.1|5500763_5502029_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	99.8	7.8e-234
WP_002903955.1|5502040_5502943_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
WP_002210513.1|5503203_5503965_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_004176269.1|5503985_5504846_-	class A broad-spectrum beta-lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
WP_014907641.1|5505143_5505404_+	hypothetical protein	NA	A0A077SK33	Escherichia_phage	97.7	2.1e-40
WP_014907640.1|5505490_5506579_+	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	99.7	1.0e-210
WP_014907639.1|5506609_5507875_-	MFS transporter	NA	NA	NA	NA	NA
WP_014907638.1|5507929_5511037_-	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
