assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002761315.1_ASM276131v1	NZ_CP017994	Klebsiella pneumoniae strain P1428, complete genome	1	340646-341344	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,DinG,RT,csa3,WYL	Type I-E	GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	11,11,11	11	TypeI-E	DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,DinG,RT,csa3,WYL	NA,NA	NA|77aa|up_9|NZ_CP017994.1_331393_331624_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|246aa|up_8|NZ_CP017994.1_331620_332358_-	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|220aa|up_7|NZ_CP017994.1_332407_333067_-	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|208aa|up_6|NZ_CP017994.1_333063_333687_-	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|446aa|up_5|NZ_CP017994.1_333770_335108_-	pfam00034, Cytochrom_C, Cytochrome c	NA|595aa|up_4|NZ_CP017994.1_335121_336906_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|251aa|up_3|NZ_CP017994.1_336908_337661_-	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|124aa|up_2|NZ_CP017994.1_338165_338537_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|228aa|up_1|NZ_CP017994.1_338597_339281_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_0|NZ_CP017994.1_339291_340407_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|down_0|NZ_CP017994.1_341391_341679_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|down_1|NZ_CP017994.1_341656_342532_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|232aa|down_2|NZ_CP017994.1_342531_343227_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|down_3|NZ_CP017994.1_343260_344295_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NZ_CP017994.1_344324_344972_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|down_5|NZ_CP017994.1_344964_345531_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NZ_CP017994.1_345542_347066_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|down_7|NZ_CP017994.1_347069_349685_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_8|NZ_CP017994.1_350866_351937_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_9|NZ_CP017994.1_351929_353699_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
GCF_002761315.1_ASM276131v1	NZ_CP017994	Klebsiella pneumoniae strain P1428, complete genome	2	350098-350614	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,DinG,RT,csa3,WYL	Type I-E	GAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGAC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	8,8,5	8	TypeI-E	DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,DinG,RT,csa3,WYL	NA,NA	NA|228aa|up_9|NZ_CP017994.1_338597_339281_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_8|NZ_CP017994.1_339291_340407_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|up_7|NZ_CP017994.1_341391_341679_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|up_6|NZ_CP017994.1_341656_342532_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|232aa|up_5|NZ_CP017994.1_342531_343227_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|up_4|NZ_CP017994.1_343260_344295_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|up_3|NZ_CP017994.1_344324_344972_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|up_2|NZ_CP017994.1_344964_345531_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_1|NZ_CP017994.1_345542_347066_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|up_0|NZ_CP017994.1_347069_349685_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_0|NZ_CP017994.1_350866_351937_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_1|NZ_CP017994.1_351929_353699_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|down_2|NZ_CP017994.1_353772_354861_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|360aa|down_3|NZ_CP017994.1_355163_356243_+	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|717aa|down_4|NZ_CP017994.1_356490_358641_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|386aa|down_5|NZ_CP017994.1_358683_359841_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|400aa|down_6|NZ_CP017994.1_360136_361336_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|145aa|down_7|NZ_CP017994.1_361452_361887_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|down_8|NZ_CP017994.1_362451_363684_+	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|131aa|down_9|NZ_CP017994.1_363720_364113_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCF_002761315.1_ASM276131v1	NZ_CP017994	Klebsiella pneumoniae strain P1428, complete genome	3	3991808-3991947	3	CRISPRCasFinder	no	DEDDh	DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,DinG,RT,csa3,WYL	Unclear	CTGCTGCTTCAGTTTTGTAGGCCGGGTAAGGCGCCAGCCGCCAGCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,DinG,RT,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP017994.1_3983173_3983755_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_8|NZ_CP017994.1_3983829_3984597_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_7|NZ_CP017994.1_3984567_3985308_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|448aa|up_6|NZ_CP017994.1_3985719_3987063_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|413aa|up_5|NZ_CP017994.1_3987066_3988305_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|265aa|up_4|NZ_CP017994.1_3988297_3989092_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|213aa|up_3|NZ_CP017994.1_3989084_3989723_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_2|NZ_CP017994.1_3989729_3990326_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|408aa|up_1|NZ_CP017994.1_3990338_3991562_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|72aa|up_0|NZ_CP017994.1_3991564_3991780_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|287aa|down_0|NZ_CP017994.1_3992002_3992863_-	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|352aa|down_1|NZ_CP017994.1_3993022_3994078_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_2|NZ_CP017994.1_3994080_3994533_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|486aa|down_3|NZ_CP017994.1_3994575_3996033_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_4|NZ_CP017994.1_3996290_3996749_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_5|NZ_CP017994.1_3996854_3998099_+	PRK05077, frsA, esterase FrsA	NA|133aa|down_6|NZ_CP017994.1_3998156_3998555_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|231aa|down_7|NZ_CP017994.1_3998640_3999333_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|467aa|down_8|NZ_CP017994.1_3999378_4000779_-	PRK10197, PRK10197, GABA permease	NA|428aa|down_9|NZ_CP017994.1_4000914_4002198_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase
GCF_002761315.1_ASM276131v1	NZ_CP017994	Klebsiella pneumoniae strain P1428, complete genome	4	4319178-4319306	4	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,DinG,RT,csa3,WYL	Orphan	GTGCCTGATGGTATCGCCCGGTGGCGCTGCGCTTACCGGGCCT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,DinG,RT,csa3,WYL	NA|130aa|up_4|NZ_CP017994.1_4314280_4314670_+,NA	NA|256aa|up_9|NZ_CP017994.1_4308577_4309345_+	pfam15977, HTH_46, Winged helix-turn-helix DNA binding	NA|115aa|up_8|NZ_CP017994.1_4309480_4309825_+	pfam11742, DUF3302, Protein of unknown function (DUF3302)	NA|266aa|up_7|NZ_CP017994.1_4311007_4311805_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|361aa|up_6|NZ_CP017994.1_4311801_4312884_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|373aa|up_5|NZ_CP017994.1_4312890_4314009_-	cd01139, TroA_f, Periplasmic binding protein TroA_f	NA|130aa|up_4|NZ_CP017994.1_4314280_4314670_+	NA	NA|152aa|up_3|NZ_CP017994.1_4314849_4315305_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|393aa|up_2|NZ_CP017994.1_4315809_4316988_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|259aa|up_1|NZ_CP017994.1_4317007_4317784_+	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|318aa|up_0|NZ_CP017994.1_4317912_4318866_+	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)	NA|264aa|down_0|NZ_CP017994.1_4320066_4320858_-	pfam17409, MoaF_C, MoaF C-terminal domain	NA|259aa|down_1|NZ_CP017994.1_4320883_4321660_-	cd05233, SDR_c, classical (c) SDRs	NA|578aa|down_2|NZ_CP017994.1_4321747_4323481_-	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|396aa|down_3|NZ_CP017994.1_4323525_4324713_-	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|228aa|down_4|NZ_CP017994.1_4325138_4325822_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|372aa|down_5|NZ_CP017994.1_4327053_4328169_+	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII	NA|198aa|down_6|NZ_CP017994.1_4328175_4328769_-	pfam11354, DUF3156, Protein of unknown function (DUF3156)	NA|500aa|down_7|NZ_CP017994.1_4328746_4330246_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|122aa|down_8|NZ_CP017994.1_4330617_4330983_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|434aa|down_9|NZ_CP017994.1_4330996_4332298_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
GCF_002761315.1_ASM276131v1	NZ_CP017994	Klebsiella pneumoniae strain P1428, complete genome	5	4619252-4619329	5	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,DinG,RT,csa3,WYL	Orphan	AAGGCGTCAGCCGCCGCCCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,DinG,RT,csa3,WYL	NA,NA|71aa|down_7|NZ_CP017994.1_4625930_4626143_-,NA|31aa|down_9|NZ_CP017994.1_4628753_4628846_+	NA|362aa|up_9|NZ_CP017994.1_4604308_4605394_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|144aa|up_8|NZ_CP017994.1_4605927_4606359_+	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|896aa|up_7|NZ_CP017994.1_4606410_4609098_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|428aa|up_6|NZ_CP017994.1_4609371_4610655_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|406aa|up_5|NZ_CP017994.1_4610911_4612129_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|319aa|up_4|NZ_CP017994.1_4612125_4613082_+	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|242aa|up_3|NZ_CP017994.1_4613143_4613869_+	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|563aa|up_2|NZ_CP017994.1_4614011_4615700_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|509aa|up_1|NZ_CP017994.1_4615696_4617223_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|461aa|up_0|NZ_CP017994.1_4617321_4618704_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|159aa|down_0|NZ_CP017994.1_4619481_4619958_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_1|NZ_CP017994.1_4620028_4621318_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_2|NZ_CP017994.1_4621531_4622572_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|386aa|down_3|NZ_CP017994.1_4622568_4623726_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_4|NZ_CP017994.1_4623709_4624465_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|241aa|down_5|NZ_CP017994.1_4624457_4625180_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|241aa|down_6|NZ_CP017994.1_4625121_4625844_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|71aa|down_7|NZ_CP017994.1_4625930_4626143_-	NA	NA|674aa|down_8|NZ_CP017994.1_4626554_4628576_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|31aa|down_9|NZ_CP017994.1_4628753_4628846_+	NA
