assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002763515.2_ASM276351v3	NZ_CP024650	Escherichia coli strain BH100 substr. MG2014 chromosome, complete genome	1	938483-938630	1	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,RT,PD-DExK,WYL	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA	28	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,cas3,DinG,csa3,RT,PD-DExK,WYL	NA|86aa|up_8|NZ_CP024650.2_930256_930514_+,NA|58aa|up_6|NZ_CP024650.2_931296_931470_-,NA|94aa|up_3|NZ_CP024650.2_934220_934502_+,NA|59aa|up_2|NZ_CP024650.2_934849_935026_+,NA	NA|585aa|up_9|NZ_CP024650.2_928213_929968_+	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|86aa|up_8|NZ_CP024650.2_930256_930514_+	NA	NA|141aa|up_7|NZ_CP024650.2_930510_930933_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|58aa|up_6|NZ_CP024650.2_931296_931470_-	NA	NA|638aa|up_5|NZ_CP024650.2_931562_933476_+	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	NA|162aa|up_4|NZ_CP024650.2_933732_934218_+	pfam07278, DUF1441, Protein of unknown function (DUF1441)	NA|94aa|up_3|NZ_CP024650.2_934220_934502_+	NA	NA|59aa|up_2|NZ_CP024650.2_934849_935026_+	NA	NA|107aa|up_1|NZ_CP024650.2_935642_935963_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP024650.2_935993_938270_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP024650.2_939012_939231_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP024650.2_939515_940220_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP024650.2_940261_941983_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP024650.2_941983_943750_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP024650.2_943872_944838_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP024650.2_945381_945876_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1340aa|down_6|NZ_CP024650.2_946010_950030_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP024650.2_950188_950800_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP024650.2_950810_952154_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP024650.2_952244_953537_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_002763515.2_ASM276351v3	NZ_CP024650	Escherichia coli strain BH100 substr. MG2014 chromosome, complete genome	2	2413099-2413212	2	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,RT,PD-DExK,WYL	Orphan	TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,RT,PD-DExK,WYL	NA,NA	NA|395aa|up_9|NZ_CP024650.2_2390566_2391751_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP024650.2_2391824_2392601_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP024650.2_2392605_2394255_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP024650.2_2394255_2398650_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP024650.2_2398793_2399417_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP024650.2_2399413_2401102_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP024650.2_2401250_2403878_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP024650.2_2404024_2404747_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1253aa|up_1|NZ_CP024650.2_2406321_2410080_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP024650.2_2410761_2413047_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP024650.2_2413236_2414367_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP024650.2_2414366_2414621_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP024650.2_2414674_2415325_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP024650.2_2415527_2416604_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP024650.2_2416608_2417967_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP024650.2_2418239_2419868_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP024650.2_2419857_2421117_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP024650.2_2421113_2422304_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|320aa|down_8|NZ_CP024650.2_2422496_2423456_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP024650.2_2423468_2423654_+	PRK09956, PRK09956, ISNCY family transposase
GCF_002763515.2_ASM276351v3	NZ_CP024650	Escherichia coli strain BH100 substr. MG2014 chromosome, complete genome	3	4298016-4298217	1	PILER-CR	no		DEDDh,cas3,DinG,csa3,RT,PD-DExK,WYL	Orphan	GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	36	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,DinG,csa3,RT,PD-DExK,WYL	NA,NA	NA|252aa|up_9|NZ_CP024650.2_4289566_4290322_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_CP024650.2_4290335_4290941_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_CP024650.2_4290937_4292578_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_CP024650.2_4292656_4292926_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_CP024650.2_4292929_4293445_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_CP024650.2_4293447_4294224_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_CP024650.2_4294265_4295048_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_CP024650.2_4295044_4295533_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_CP024650.2_4295699_4297193_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_CP024650.2_4297238_4297940_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_CP024650.2_4298221_4299385_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_CP024650.2_4299394_4301584_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_CP024650.2_4301773_4303105_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NZ_CP024650.2_4303104_4303719_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NZ_CP024650.2_4303757_4305209_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NZ_CP024650.2_4305220_4305766_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NZ_CP024650.2_4311257_4311785_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NZ_CP024650.2_4311766_4312351_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NZ_CP024650.2_4312420_4312690_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NZ_CP024650.2_4312766_4313753_+	PRK11768, PRK11768, serine/threonine protein kinase
GCF_002763515.2_ASM276351v3	NZ_CP024650	Escherichia coli strain BH100 substr. MG2014 chromosome, complete genome	4	4358552-4358678	3	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,RT,PD-DExK,WYL	Orphan	GTAGGCCGGATAAGGCACTCGTGCCGCATCCGGCA	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,RT,PD-DExK,WYL	NA,NA	NA|97aa|up_9|NZ_CP024650.2_4346913_4347204_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|73aa|up_8|NZ_CP024650.2_4347808_4348027_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|310aa|up_7|NZ_CP024650.2_4348241_4349171_-	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional	NA|212aa|up_6|NZ_CP024650.2_4349167_4349803_-	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit	NA|301aa|up_5|NZ_CP024650.2_4349799_4350702_-	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|1017aa|up_4|NZ_CP024650.2_4350714_4353765_-	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|278aa|up_3|NZ_CP024650.2_4353958_4354792_+	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|465aa|up_2|NZ_CP024650.2_4355924_4357319_+	pfam16966, Porin_8, Porin-like glycoporin RafY	NA|105aa|up_1|NZ_CP024650.2_4357359_4357674_-	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase	NA|275aa|up_0|NZ_CP024650.2_4357683_4358508_-	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional	NA|420aa|down_0|NZ_CP024650.2_4358682_4359942_-	PRK01076, PRK01076, L-rhamnose isomerase; Provisional	NA|490aa|down_1|NZ_CP024650.2_4359938_4361408_-	PRK10640, rhaB, rhamnulokinase; Provisional	NA|279aa|down_2|NZ_CP024650.2_4361695_4362532_+	PRK13503, PRK13503, HTH-type transcriptional activator RhaS	NA|313aa|down_3|NZ_CP024650.2_4362515_4363454_+	PRK13500, PRK13500, HTH-type transcriptional activator RhaR	NA|345aa|down_4|NZ_CP024650.2_4363450_4364485_-	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT)	NA|207aa|down_5|NZ_CP024650.2_4364770_4365391_+	PRK10925, PRK10925, superoxide dismutase [Mn]	NA|328aa|down_6|NZ_CP024650.2_4365650_4366634_+	TIGR00793, 2-keto-3-deoxygluconate_permease, 2-keto-3-deoxygluconate transporter	NA|225aa|down_7|NZ_CP024650.2_4366782_4367457_+	PRK11536, PRK11536, 6-N-hydroxylaminopurine resistance protein; Provisional	NA|458aa|down_8|NZ_CP024650.2_4367628_4369002_-	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|233aa|down_9|NZ_CP024650.2_4368998_4369697_-	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR
GCF_002763515.2_ASM276351v3	NZ_CP024650	Escherichia coli strain BH100 substr. MG2014 chromosome, complete genome	5	4793510-4793649	4	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,RT,PD-DExK,WYL	Orphan	TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,RT,PD-DExK,WYL	NA,NA	NA|335aa|up_9|NZ_CP024650.2_4782056_4783061_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_8|NZ_CP024650.2_4783071_4784016_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NZ_CP024650.2_4784026_4785247_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NZ_CP024650.2_4785924_4786377_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NZ_CP024650.2_4786420_4787425_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP024650.2_4787586_4788003_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP024650.2_4788179_4788683_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP024650.2_4788875_4790063_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP024650.2_4790109_4792965_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP024650.2_4792964_4793408_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP024650.2_4793665_4795177_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP024650.2_4795443_4796544_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP024650.2_4796543_4797626_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP024650.2_4797786_4799289_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP024650.2_4799366_4800365_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP024650.2_4800430_4801750_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP024650.2_4801814_4802579_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP024650.2_4802602_4803634_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP024650.2_4803850_4804414_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP024650.2_4804417_4805437_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
