assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002763955.1_ASM276395v1	NZ_CP024732	Prevotella intermedia strain KCOM 1741 chromosome 1, complete sequence	1	12602-12699	1	CRISPRCasFinder	no	cas3	cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK	Unclear	CAAACTAAGAGTAAACTCTCTTTGCACTCGCT	32	0	0	NA	NA	NA	1	1	Unclear	cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK,Csx28,cas13b	NA|64aa|up_5|NZ_CP024732.1_4569_4761_-,NA	NA|NA	NA	NA|554aa|up_8|NZ_CP024732.1_527_2189_-	cd05914, LC_FACL_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	NA|416aa|up_7|NZ_CP024732.1_2314_3562_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|155aa|up_6|NZ_CP024732.1_3854_4319_-	TIGR01201, HU_rel, DNA-binding protein, histone-like, putative	NA|64aa|up_5|NZ_CP024732.1_4569_4761_-	NA	NA|1132aa|up_4|NZ_CP024732.1_4774_8170_-	sd00036, LRR_3, leucine-rich repeats	NA|161aa|up_3|NZ_CP024732.1_8798_9281_+	pfam14902, DUF4494, Domain of unknown function (DUF4494)	NA|224aa|up_2|NZ_CP024732.1_9316_9988_+	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|527aa|up_1|NZ_CP024732.1_10040_11621_+	COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only]	NA|187aa|up_0|NZ_CP024732.1_11636_12197_+	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|511aa|down_0|NZ_CP024732.1_12746_14279_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|284aa|down_1|NZ_CP024732.1_14323_15175_+	pfam16269, DUF4922, Domain of unknown function (DUF4922)	NA|445aa|down_2|NZ_CP024732.1_15188_16523_+	TIGR02669, stage_II_sporulation_protein_D, SpoIID/LytB domain	NA|426aa|down_3|NZ_CP024732.1_16564_17842_+	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|417aa|down_4|NZ_CP024732.1_17950_19201_+	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional	NA|311aa|down_5|NZ_CP024732.1_19918_20851_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|874aa|down_6|NZ_CP024732.1_21081_23703_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|418aa|down_7|NZ_CP024732.1_23797_25051_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|371aa|down_8|NZ_CP024732.1_25207_26320_+	sd00006, TPR, Tetratricopeptide repeat	NA|404aa|down_9|NZ_CP024732.1_26316_27528_+	sd00006, TPR, Tetratricopeptide repeat
GCF_002763955.1_ASM276395v1	NZ_CP024732	Prevotella intermedia strain KCOM 1741 chromosome 1, complete sequence	2	170804-170883	2	CRISPRCasFinder	no		cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK	Orphan	TTTGGTTATTCGTTTGGTTATTC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK,Csx28,cas13b	NA|62aa|up_3|NZ_CP024732.1_166763_166949_-,NA|120aa|up_1|NZ_CP024732.1_168723_169083_+,NA|75aa|down_0|NZ_CP024732.1_171152_171377_-,NA|81aa|down_2|NZ_CP024732.1_171676_171919_-,NA|151aa|down_3|NZ_CP024732.1_171965_172418_-,NA|117aa|down_4|NZ_CP024732.1_172761_173112_+,NA|79aa|down_6|NZ_CP024732.1_174164_174401_+,NA|125aa|down_7|NZ_CP024732.1_174404_174779_+,NA|78aa|down_8|NZ_CP024732.1_174790_175024_+,NA|699aa|down_9|NZ_CP024732.1_175039_177136_+	NA|557aa|up_9|NZ_CP024732.1_160238_161909_+	TIGR00173, menD, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	NA|276aa|up_8|NZ_CP024732.1_161926_162754_+	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|346aa|up_7|NZ_CP024732.1_162760_163798_+	cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway	NA|339aa|up_6|NZ_CP024732.1_163868_164885_+	cd17630, OSB_MenE-like, O-succinylbenzoic acid-CoA ligase	NA|349aa|up_5|NZ_CP024732.1_164942_165989_-	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis	NA|152aa|up_4|NZ_CP024732.1_166152_166608_-	pfam04170, NlpE, NlpE N-terminal domain	NA|62aa|up_3|NZ_CP024732.1_166763_166949_-	NA	NA|415aa|up_2|NZ_CP024732.1_166986_168231_-	PRK07106, PRK07106, phosphoribosylaminoimidazolecarboxamide formyltransferase	NA|120aa|up_1|NZ_CP024732.1_168723_169083_+	NA	NA|274aa|up_0|NZ_CP024732.1_169316_170138_+	pfam13488, Gly-zipper_Omp, Glycine zipper	NA|75aa|down_0|NZ_CP024732.1_171152_171377_-	NA	NA|89aa|down_1|NZ_CP024732.1_171369_171636_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|81aa|down_2|NZ_CP024732.1_171676_171919_-	NA	NA|151aa|down_3|NZ_CP024732.1_171965_172418_-	NA	NA|117aa|down_4|NZ_CP024732.1_172761_173112_+	NA	NA|233aa|down_5|NZ_CP024732.1_173285_173984_-	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|79aa|down_6|NZ_CP024732.1_174164_174401_+	NA	NA|125aa|down_7|NZ_CP024732.1_174404_174779_+	NA	NA|78aa|down_8|NZ_CP024732.1_174790_175024_+	NA	NA|699aa|down_9|NZ_CP024732.1_175039_177136_+	NA
GCF_002763955.1_ASM276395v1	NZ_CP024732	Prevotella intermedia strain KCOM 1741 chromosome 1, complete sequence	3	972016-972167	3	CRISPRCasFinder	no		cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK	Orphan	GTTTTTCATGGTCTCTAATCTATGAAAAACACCGCAGGTTTGCCCCGCGGC	51	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK,Csx28,cas13b	NA|58aa|up_6|NZ_CP024732.1_963484_963658_-,NA|287aa|up_3|NZ_CP024732.1_966392_967253_+,NA|178aa|up_0|NZ_CP024732.1_970327_970861_+,NA|74aa|down_3|NZ_CP024732.1_976453_976675_-,NA|51aa|down_4|NZ_CP024732.1_976881_977034_-,NA|135aa|down_6|NZ_CP024732.1_978095_978500_-,NA|155aa|down_7|NZ_CP024732.1_978600_979065_-	NA|424aa|up_9|NZ_CP024732.1_959404_960676_+	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|444aa|up_8|NZ_CP024732.1_960752_962084_+	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]	NA|424aa|up_7|NZ_CP024732.1_962143_963415_+	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|58aa|up_6|NZ_CP024732.1_963484_963658_-	NA	NA|368aa|up_5|NZ_CP024732.1_963853_964957_+	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	NA|462aa|up_4|NZ_CP024732.1_965002_966388_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|287aa|up_3|NZ_CP024732.1_966392_967253_+	NA	NA|483aa|up_2|NZ_CP024732.1_967286_968735_+	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|437aa|up_1|NZ_CP024732.1_968790_970101_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|178aa|up_0|NZ_CP024732.1_970327_970861_+	NA	NA|311aa|down_0|NZ_CP024732.1_972259_973192_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|538aa|down_1|NZ_CP024732.1_973721_975335_-	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|220aa|down_2|NZ_CP024732.1_975617_976277_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|74aa|down_3|NZ_CP024732.1_976453_976675_-	NA	NA|51aa|down_4|NZ_CP024732.1_976881_977034_-	NA	NA|286aa|down_5|NZ_CP024732.1_977052_977910_-	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed	NA|135aa|down_6|NZ_CP024732.1_978095_978500_-	NA	NA|155aa|down_7|NZ_CP024732.1_978600_979065_-	NA	NA|261aa|down_8|NZ_CP024732.1_979103_979886_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|423aa|down_9|NZ_CP024732.1_979886_981155_-	cd03825, GT4_WcaC-like, putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins
GCF_002763955.1_ASM276395v1	NZ_CP024732	Prevotella intermedia strain KCOM 1741 chromosome 1, complete sequence	4	1006926-1007508	4,1	CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas9	cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK	 or Type II-C?,Type II-C, Type II-B,Type II-B,Type II-A	GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC,GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC	47,47	0	0	NA	NA	NA:NA	7,5	7	orTypeII-C?,TypeII-C,TypeII-B,TypeII-B,TypeII-A	cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK,Csx28,cas13b	NA|479aa|up_6|NZ_CP024732.1_997573_999010_-,NA|450aa|up_5|NZ_CP024732.1_999006_1000356_-,NA|228aa|down_4|NZ_CP024732.1_1018666_1019350_+,NA|82aa|down_5|NZ_CP024732.1_1019508_1019754_-	NA|194aa|up_9|NZ_CP024732.1_994445_995027_+	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|482aa|up_8|NZ_CP024732.1_995093_996539_+	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|320aa|up_7|NZ_CP024732.1_996600_997560_-	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|479aa|up_6|NZ_CP024732.1_997573_999010_-	NA	NA|450aa|up_5|NZ_CP024732.1_999006_1000356_-	NA	NA|321aa|up_4|NZ_CP024732.1_1000441_1001404_-	pfam12710, HAD, haloacid dehalogenase-like hydrolase	NA|293aa|up_3|NZ_CP024732.1_1001405_1002284_-	cd13963, PT_UbiA_2, UbiA family of prenyltransferases (PTases), Unknown subgroup	NA|341aa|up_2|NZ_CP024732.1_1002288_1003311_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|368aa|up_1|NZ_CP024732.1_1003312_1004416_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|616aa|up_0|NZ_CP024732.1_1004478_1006326_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|311aa|down_0|NZ_CP024732.1_1007671_1008604_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas2|99aa|down_1|NZ_CP024732.1_1012684_1012981_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|311aa|down_2|NZ_CP024732.1_1013032_1013965_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1381aa|down_3|NZ_CP024732.1_1013977_1018120_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|228aa|down_4|NZ_CP024732.1_1018666_1019350_+	NA	NA|82aa|down_5|NZ_CP024732.1_1019508_1019754_-	NA	NA|444aa|down_6|NZ_CP024732.1_1019979_1021311_-	pfam13173, AAA_14, AAA domain	NA|475aa|down_7|NZ_CP024732.1_1021601_1023026_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|399aa|down_8|NZ_CP024732.1_1023426_1024623_-	pfam07396, Porin_O_P, Phosphate-selective porin O and P	NA|352aa|down_9|NZ_CP024732.1_1024731_1025787_-	PRK11096, ansB, L-asparaginase II; Provisional
GCF_002763955.1_ASM276395v1	NZ_CP024732	Prevotella intermedia strain KCOM 1741 chromosome 1, complete sequence	5	1008681-1012564	2,5	PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas9	cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK	 or Type II-C?,Type II-C, Type II-B,Type II-B,Type II-A	GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC,GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC	47,47	0	0	NA	NA	NA:NA	50,50	50	orTypeII-C?,TypeII-C,TypeII-B,TypeII-B,TypeII-A	cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK,Csx28,cas13b	NA|479aa|up_7|NZ_CP024732.1_997573_999010_-,NA|450aa|up_6|NZ_CP024732.1_999006_1000356_-,NA|228aa|down_3|NZ_CP024732.1_1018666_1019350_+,NA|82aa|down_4|NZ_CP024732.1_1019508_1019754_-	NA|482aa|up_9|NZ_CP024732.1_995093_996539_+	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|320aa|up_8|NZ_CP024732.1_996600_997560_-	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|479aa|up_7|NZ_CP024732.1_997573_999010_-	NA	NA|450aa|up_6|NZ_CP024732.1_999006_1000356_-	NA	NA|321aa|up_5|NZ_CP024732.1_1000441_1001404_-	pfam12710, HAD, haloacid dehalogenase-like hydrolase	NA|293aa|up_4|NZ_CP024732.1_1001405_1002284_-	cd13963, PT_UbiA_2, UbiA family of prenyltransferases (PTases), Unknown subgroup	NA|341aa|up_3|NZ_CP024732.1_1002288_1003311_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|368aa|up_2|NZ_CP024732.1_1003312_1004416_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|616aa|up_1|NZ_CP024732.1_1004478_1006326_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|311aa|up_0|NZ_CP024732.1_1007671_1008604_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas2|99aa|down_0|NZ_CP024732.1_1012684_1012981_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|311aa|down_1|NZ_CP024732.1_1013032_1013965_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1381aa|down_2|NZ_CP024732.1_1013977_1018120_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|228aa|down_3|NZ_CP024732.1_1018666_1019350_+	NA	NA|82aa|down_4|NZ_CP024732.1_1019508_1019754_-	NA	NA|444aa|down_5|NZ_CP024732.1_1019979_1021311_-	pfam13173, AAA_14, AAA domain	NA|475aa|down_6|NZ_CP024732.1_1021601_1023026_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|399aa|down_7|NZ_CP024732.1_1023426_1024623_-	pfam07396, Porin_O_P, Phosphate-selective porin O and P	NA|352aa|down_8|NZ_CP024732.1_1024731_1025787_-	PRK11096, ansB, L-asparaginase II; Provisional	NA|439aa|down_9|NZ_CP024732.1_1025846_1027163_-	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed
GCF_002763955.1_ASM276395v1	NZ_CP024733	Prevotella intermedia strain KCOM 1741 chromosome 2, complete sequence	1	138544-138781	1,1,1	PILER-CR,CRT,CRISPRCasFinder	no	Csx28,cas13b	DEDDh,Csx28,cas13b	Type VI-B2,Type VI-B1	AAGTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC,AAGTTGTTTTTACCTTGCAAACNNAGCAGGCAGATGC,AGTTGTTTTTACCTTGCAAACAGCAGGCAGATGC	38,37,34	0	0	NA	NA	VI-B2:VI-B2:VI-B2	3,3,1	3	TypeVI-B2,TypeVI-B1	cas3,WYL,cas2,cas1,cas9,DEDDh,RT,PD-DExK,Csx28,cas13b	NA|170aa|up_7|NZ_CP024733.1_122786_123296_+,NA|678aa|up_6|NZ_CP024733.1_124192_126226_+,NA|62aa|up_0|NZ_CP024733.1_138072_138258_+,Csx28|187aa|down_0|NZ_CP024733.1_138849_139410_-,NA|298aa|down_2|NZ_CP024733.1_143071_143965_-,NA|139aa|down_3|NZ_CP024733.1_144141_144558_+,NA|836aa|down_4|NZ_CP024733.1_151014_153522_-	NA|397aa|up_9|NZ_CP024733.1_119531_120722_+	pfam09640, DUF2027, Domain of unknown function (DUF2027)	NA|652aa|up_8|NZ_CP024733.1_120737_122693_+	PRK02628, nadE, NAD synthetase; Reviewed	NA|170aa|up_7|NZ_CP024733.1_122786_123296_+	NA	NA|678aa|up_6|NZ_CP024733.1_124192_126226_+	NA	NA|763aa|up_5|NZ_CP024733.1_126832_129121_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|206aa|up_4|NZ_CP024733.1_129257_129875_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|733aa|up_3|NZ_CP024733.1_129998_132197_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|506aa|up_2|NZ_CP024733.1_132349_133867_+	pfam14134, DUF4301, Domain of unknown function (DUF4301)	NA|1007aa|up_1|NZ_CP024733.1_134706_137727_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|62aa|up_0|NZ_CP024733.1_138072_138258_+	NA	Csx28|187aa|down_0|NZ_CP024733.1_138849_139410_-	NA	cas13b|1126aa|down_1|NZ_CP024733.1_139414_142792_-	cd20477, Cas13b_Pb-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Prevotella buccae and similar Cas13b proteins	NA|298aa|down_2|NZ_CP024733.1_143071_143965_-	NA	NA|139aa|down_3|NZ_CP024733.1_144141_144558_+	NA	NA|836aa|down_4|NZ_CP024733.1_151014_153522_-	NA	NA|749aa|down_5|NZ_CP024733.1_154384_156631_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|264aa|down_6|NZ_CP024733.1_156866_157658_+	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme	NA|155aa|down_7|NZ_CP024733.1_157863_158328_-	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|166aa|down_8|NZ_CP024733.1_158834_159332_-	COG3943, COG3943, Virulence protein [General function prediction only]	NA|218aa|down_9|NZ_CP024733.1_159930_160584_+	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain
