assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002763995.1_ASM276399v1	NZ_CP024720	Escherichia coli isolate NQ3 chromosome, complete genome	1	1930987-1931110	1	CRISPRCasFinder	no	DEDDh	csa3,cas3,DEDDh,c2c9_V-U4,DinG,RT,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,RT,WYL	NA,NA|30aa|down_7|NZ_CP024720.1_1940006_1940096_+	NA|471aa|up_9|NZ_CP024720.1_1920439_1921852_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP024720.1_1922408_1922618_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP024720.1_1923073_1923700_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP024720.1_1923720_1925823_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP024720.1_1925826_1926474_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP024720.1_1926537_1927206_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP024720.1_1927202_1927988_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP024720.1_1927991_1928804_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP024720.1_1928815_1930420_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP024720.1_1930545_1930851_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024720.1_1931424_1932681_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024720.1_1932721_1934095_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024720.1_1934309_1934951_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024720.1_1934990_1936139_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024720.1_1936429_1937641_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024720.1_1937753_1938686_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024720.1_1938682_1939708_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024720.1_1940006_1940096_+	NA	NA|390aa|down_8|NZ_CP024720.1_1940261_1941431_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP024720.1_1941576_1942158_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002763995.1_ASM276399v1	NZ_CP024720	Escherichia coli isolate NQ3 chromosome, complete genome	2	2474543-2474656	1	PILER-CR	no		csa3,cas3,DEDDh,c2c9_V-U4,DinG,RT,WYL	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,RT,WYL	NA|47aa|up_8|NZ_CP024720.1_2465931_2466072_-,NA|34aa|up_3|NZ_CP024720.1_2467332_2467434_-,NA|94aa|down_9|NZ_CP024720.1_2479721_2480003_+	NA|230aa|up_9|NZ_CP024720.1_2465245_2465935_-	pfam06323, Phage_antiter_Q, Phage antitermination protein Q	NA|47aa|up_8|NZ_CP024720.1_2465931_2466072_-	NA	NA|121aa|up_7|NZ_CP024720.1_2466068_2466431_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_6|NZ_CP024720.1_2466427_2466718_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_5|NZ_CP024720.1_2466710_2466881_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_4|NZ_CP024720.1_2466880_2467336_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_3|NZ_CP024720.1_2467332_2467434_-	NA	NA|348aa|up_2|NZ_CP024720.1_2467783_2468827_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|1422aa|up_1|NZ_CP024720.1_2468863_2473129_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|234aa|up_0|NZ_CP024720.1_2473378_2474080_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP024720.1_2475092_2475632_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP024720.1_2475701_2475932_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP024720.1_2476036_2476726_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_3|NZ_CP024720.1_2477321_2477528_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP024720.1_2477603_2477900_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP024720.1_2477905_2478691_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NZ_CP024720.1_2478687_2479368_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NZ_CP024720.1_2479364_2479547_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NZ_CP024720.1_2479519_2479711_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|down_9|NZ_CP024720.1_2479721_2480003_+	NA
GCF_002763995.1_ASM276399v1	NZ_CP024720	Escherichia coli isolate NQ3 chromosome, complete genome	3	2701762-2701853	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,DinG,RT,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,RT,WYL	NA|70aa|up_9|NZ_CP024720.1_2691012_2691222_-,NA	NA|70aa|up_9|NZ_CP024720.1_2691012_2691222_-	NA	NA|1321aa|up_8|NZ_CP024720.1_2691276_2695239_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP024720.1_2695278_2695917_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP024720.1_2696204_2697296_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP024720.1_2697295_2697988_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP024720.1_2697999_2698386_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP024720.1_2698393_2699194_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP024720.1_2699203_2699794_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP024720.1_2699804_2700299_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP024720.1_2700319_2701648_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP024720.1_2702276_2702873_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP024720.1_2702893_2703121_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP024720.1_2703158_2704400_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP024720.1_2704934_2705855_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP024720.1_2705854_2706160_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP024720.1_2706414_2707014_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP024720.1_2707010_2709557_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP024720.1_2709556_2710729_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP024720.1_2710858_2711551_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP024720.1_2711523_2712552_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_002763995.1_ASM276399v1	NZ_CP024720	Escherichia coli isolate NQ3 chromosome, complete genome	4	2936852-2936934	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,DinG,RT,WYL	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,RT,WYL	NA,NA	NA|431aa|up_9|NZ_CP024720.1_2921849_2923142_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP024720.1_2923232_2924576_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP024720.1_2924586_2925198_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP024720.1_2925356_2929463_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP024720.1_2929597_2930092_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP024720.1_2930635_2931601_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP024720.1_2931723_2933490_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP024720.1_2933490_2935212_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP024720.1_2935253_2935958_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP024720.1_2936242_2936461_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP024720.1_2937145_2939422_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP024720.1_2939452_2939773_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP024720.1_2940095_2940320_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP024720.1_2940392_2942339_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP024720.1_2942335_2943451_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP024720.1_2943601_2944558_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP024720.1_2944554_2946213_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP024720.1_2946637_2947333_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP024720.1_2947747_2948647_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP024720.1_2948790_2950443_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002763995.1_ASM276399v1	NZ_CP024720	Escherichia coli isolate NQ3 chromosome, complete genome	5	3855843-3855975	2	PILER-CR	no		csa3,cas3,DEDDh,c2c9_V-U4,DinG,RT,WYL	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,RT,WYL	NA,NA	NA|95aa|up_9|NZ_CP024720.1_3847244_3847529_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP024720.1_3847531_3847765_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP024720.1_3847850_3848330_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP024720.1_3848521_3850384_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP024720.1_3850376_3850907_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP024720.1_3851014_3852346_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP024720.1_3852404_3852692_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP024720.1_3852688_3853975_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP024720.1_3854025_3854967_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP024720.1_3854981_3855752_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP024720.1_3856224_3857739_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP024720.1_3857769_3858912_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP024720.1_3859040_3860258_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP024720.1_3860330_3861884_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP024720.1_3861992_3862778_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP024720.1_3862783_3863374_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP024720.1_3863492_3863888_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP024720.1_3864148_3867370_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP024720.1_3867387_3868536_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP024720.1_3868991_3869813_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
