assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002786465.1_ASM278646v1	NZ_CP022290	Staphylococcus aureus subsp. aureus strain EDCC5458 chromosome, complete genome	1	376702-376802	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP022290.1_368274_368484_-,NA|128aa|up_6|NZ_CP022290.1_369308_369692_-,NA|34aa|up_0|NZ_CP022290.1_375926_376028_+,NA|221aa|down_1|NZ_CP022290.1_377892_378555_-,NA|179aa|down_7|NZ_CP022290.1_384646_385183_-	NA|84aa|up_9|NZ_CP022290.1_367984_368236_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP022290.1_368274_368484_-	NA	NA|194aa|up_7|NZ_CP022290.1_368661_369243_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP022290.1_369308_369692_-	NA	NA|209aa|up_5|NZ_CP022290.1_369946_370573_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP022290.1_371017_372541_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP022290.1_372556_373126_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP022290.1_373617_374373_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP022290.1_374453_375842_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP022290.1_375926_376028_+	NA	NA|319aa|down_0|NZ_CP022290.1_376818_377775_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP022290.1_377892_378555_-	NA	NA|136aa|down_2|NZ_CP022290.1_378697_379105_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP022290.1_379617_380196_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP022290.1_380195_381464_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP022290.1_381501_382968_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP022290.1_382992_384534_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP022290.1_384646_385183_-	NA	NA|235aa|down_8|NZ_CP022290.1_385575_386280_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP022290.1_386678_386951_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002786465.1_ASM278646v1	NZ_CP022290	Staphylococcus aureus subsp. aureus strain EDCC5458 chromosome, complete genome	2	620787-620879	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP022290.1_617270_617378_+,NA|169aa|down_4|NZ_CP022290.1_624626_625133_+,NA|239aa|down_5|NZ_CP022290.1_625294_626011_+	NA|313aa|up_9|NZ_CP022290.1_611484_612423_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP022290.1_612633_613170_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP022290.1_613338_613815_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP022290.1_613854_615150_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP022290.1_615177_615699_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP022290.1_616185_617196_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP022290.1_617270_617378_+	NA	NA|139aa|up_2|NZ_CP022290.1_617470_617887_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP022290.1_617883_619545_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP022290.1_619933_620569_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP022290.1_620947_621835_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP022290.1_621982_622933_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP022290.1_622987_623707_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP022290.1_623690_624491_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP022290.1_624626_625133_+	NA	NA|239aa|down_5|NZ_CP022290.1_625294_626011_+	NA	NA|263aa|down_6|NZ_CP022290.1_626179_626968_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP022290.1_627218_627593_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP022290.1_628540_629470_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP022290.1_629664_629889_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_002786465.1_ASM278646v1	NZ_CP022290	Staphylococcus aureus subsp. aureus strain EDCC5458 chromosome, complete genome	3	736867-736949	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|NZ_CP022290.1_723467_723674_+,NA|34aa|down_1|NZ_CP022290.1_738405_738507_+,NA|52aa|down_8|NZ_CP022290.1_746686_746842_+	NA|69aa|up_9|NZ_CP022290.1_723467_723674_+	NA	NA|237aa|up_8|NZ_CP022290.1_723761_724472_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP022290.1_724455_725460_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP022290.1_725933_727874_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP022290.1_728144_730028_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP022290.1_730039_731821_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP022290.1_732042_733020_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP022290.1_733012_734527_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP022290.1_734766_735825_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP022290.1_736175_736718_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP022290.1_737397_738315_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP022290.1_738405_738507_+	NA	NA|502aa|down_2|NZ_CP022290.1_738584_740090_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP022290.1_740430_740931_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP022290.1_740950_741817_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP022290.1_742617_743016_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP022290.1_742978_745084_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP022290.1_745201_746173_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP022290.1_746686_746842_+	NA	NA|324aa|down_9|NZ_CP022290.1_746880_747852_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_002786465.1_ASM278646v1	NZ_CP022290	Staphylococcus aureus subsp. aureus strain EDCC5458 chromosome, complete genome	4	783372-783457	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	4	783402-783427|783402-783427|783402-783427|783402-783427	NZ_CP022290.1_746364-746339|NZ_CP022290.1_1136988-1136963|NZ_CP022290.1_2805504-2805529|NZ_CP022290.1_746420-746395	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP022290.1_770624_771464_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP022290.1_771637_772288_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP022290.1_772284_772521_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP022290.1_772789_774775_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP022290.1_774782_777629_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP022290.1_778290_779223_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP022290.1_779228_780068_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP022290.1_780075_780561_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP022290.1_780568_782008_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP022290.1_782074_783010_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP022290.1_783889_784801_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP022290.1_784797_785793_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP022290.1_785902_786847_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP022290.1_787420_788008_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP022290.1_788250_789153_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP022290.1_789855_790485_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP022290.1_791244_792258_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP022290.1_792310_793321_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP022290.1_793459_794650_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP022290.1_794771_795533_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_002786465.1_ASM278646v1	NZ_CP022290	Staphylococcus aureus subsp. aureus strain EDCC5458 chromosome, complete genome	5	826702-826783	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	826726-826759|826726-826759	NZ_CP022290.1_1343477-1343444|NZ_CP022290.1_1432631-1432664	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP022290.1_819805_820387_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP022290.1_820459_821077_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP022290.1_821231_821726_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP022290.1_822124_822547_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP022290.1_822694_823411_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP022290.1_823493_824033_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP022290.1_824182_824503_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP022290.1_824646_825003_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP022290.1_825160_825541_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP022290.1_825719_826598_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP022290.1_827336_827723_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP022290.1_827715_828012_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP022290.1_828261_829287_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP022290.1_829279_829975_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP022290.1_829992_830814_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP022290.1_831167_831362_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP022290.1_831594_832446_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP022290.1_832773_833535_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP022290.1_833632_834940_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP022290.1_835045_836296_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_002786465.1_ASM278646v1	NZ_CP022290	Staphylococcus aureus subsp. aureus strain EDCC5458 chromosome, complete genome	6	875553-875638	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAGTGTGCAAGTTGG	30	1	3	875583-875608|875583-875608|875583-875608	NZ_CP022290.1_783483-783458|NZ_CP022290.1_2005208-2005183|NZ_CP022290.1_338090-338115	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP022290.1_864442_865939_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP022290.1_865931_866273_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP022290.1_866272_866701_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP022290.1_866693_869099_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP022290.1_869229_869613_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP022290.1_869676_870270_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP022290.1_870685_871063_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP022290.1_871424_872552_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP022290.1_872859_874050_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP022290.1_874158_875403_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP022290.1_875790_876720_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP022290.1_876961_878341_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP022290.1_878330_879536_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP022290.1_879886_881218_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP022290.1_881542_882118_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP022290.1_882122_882647_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP022290.1_882662_883238_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP022290.1_883397_886874_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP022290.1_886874_890528_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP022290.1_890693_891596_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002786465.1_ASM278646v1	NZ_CP022290	Staphylococcus aureus subsp. aureus strain EDCC5458 chromosome, complete genome	7	1136793-1136979	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCGGGGCCCCAACATAGA	19	3	31	1136812-1136848|1136812-1136848|1136812-1136848|1136812-1136848|1136812-1136848|1136812-1136848|1136812-1136848|1136812-1136848|1136868-1136904|1136868-1136904|1136868-1136904|1136868-1136904|1136868-1136904|1136868-1136904|1136868-1136904|1136868-1136904|1136868-1136904|1136868-1136904|1136868-1136904|1136924-1136960|1136924-1136960|1136924-1136960|1136924-1136960|1136924-1136960|1136924-1136960|1136924-1136960|1136924-1136960|1136924-1136960|1136924-1136960|1136924-1136960|1136924-1136960	NZ_CP022290.1_1850278-1850314|NZ_CP022290.1_777976-777940|NZ_CP022290.1_778031-777995|NZ_CP022290.1_826799-826763|NZ_CP022290.1_1671760-1671724|NZ_CP022290.1_2015997-2015961|NZ_CP022290.1_2555554-2555590|NZ_CP022290.1_2805567-2805531|NZ_CP022290.1_338107-338143|NZ_CP022290.1_783466-783430|NZ_CP022290.1_992859-992823|NZ_CP022290.1_1343403-1343439|NZ_CP022290.1_2005191-2005155|NZ_CP022290.1_1432705-1432669|NZ_CP022290.1_1671818-1671782|NZ_CP022290.1_2640005-2639969|NZ_CP022290.1_1132900-1132936|NZ_CP022290.1_1136980-1137016|NZ_CP022290.1_2005132-2005096|NZ_CP022290.1_113215-113251|NZ_CP022290.1_619825-619861|NZ_CP022290.1_735921-735885|NZ_CP022290.1_736855-736891|NZ_CP022290.1_783522-783486|NZ_CP022290.1_1343461-1343497|NZ_CP022290.1_1432647-1432611|NZ_CP022290.1_2006648-2006612|NZ_CP022290.1_2006707-2006671|NZ_CP022290.1_1019055-1019019|NZ_CP022290.1_2530307-2530271|NZ_CP022290.1_1132956-1132992	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|31aa|up_9|NZ_CP022290.1_1129616_1129709_-,NA|169aa|up_7|NZ_CP022290.1_1130741_1131248_+,NA|62aa|up_4|NZ_CP022290.1_1133160_1133346_-,NA|78aa|up_3|NZ_CP022290.1_1133967_1134201_-,NA|49aa|up_1|NZ_CP022290.1_1136309_1136456_+,NA|75aa|up_0|NZ_CP022290.1_1136412_1136637_+,NA|76aa|down_6|NZ_CP022290.1_1143992_1144220_+	NA|31aa|up_9|NZ_CP022290.1_1129616_1129709_-	NA	NA|134aa|up_8|NZ_CP022290.1_1129668_1130070_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP022290.1_1130741_1131248_+	NA	NA|166aa|up_6|NZ_CP022290.1_1131506_1132004_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP022290.1_1132157_1132508_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP022290.1_1133160_1133346_-	NA	NA|78aa|up_3|NZ_CP022290.1_1133967_1134201_-	NA	NA|320aa|up_2|NZ_CP022290.1_1134677_1135637_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP022290.1_1136309_1136456_+	NA	NA|75aa|up_0|NZ_CP022290.1_1136412_1136637_+	NA	NA|239aa|down_0|NZ_CP022290.1_1137193_1137910_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP022290.1_1138017_1138743_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP022290.1_1138837_1139563_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP022290.1_1140000_1141002_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP022290.1_1141024_1141957_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP022290.1_1142128_1143685_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP022290.1_1143992_1144220_+	NA	NA|316aa|down_7|NZ_CP022290.1_1144524_1145472_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP022290.1_1145720_1145909_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP022290.1_1146820_1146955_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_002786465.1_ASM278646v1	NZ_CP022290	Staphylococcus aureus subsp. aureus strain EDCC5458 chromosome, complete genome	8	2239833-2239983	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP022290.1_2234704_2234935_-,NA|364aa|up_0|NZ_CP022290.1_2238723_2239815_+,NA|35aa|down_0|NZ_CP022290.1_2240314_2240419_-,NA|31aa|down_2|NZ_CP022290.1_2242530_2242623_+	NA|237aa|up_9|NZ_CP022290.1_2230314_2231025_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP022290.1_2231145_2231589_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP022290.1_2231788_2232202_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP022290.1_2232659_2234033_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP022290.1_2234704_2234935_-	NA	NA|313aa|up_4|NZ_CP022290.1_2234965_2235904_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP022290.1_2236338_2237004_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP022290.1_2237155_2237476_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP022290.1_2237477_2238458_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP022290.1_2238723_2239815_+	NA	NA|35aa|down_0|NZ_CP022290.1_2240314_2240419_-	NA	NA|379aa|down_1|NZ_CP022290.1_2241105_2242242_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP022290.1_2242530_2242623_+	NA	NA|286aa|down_3|NZ_CP022290.1_2243327_2244185_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP022290.1_2244252_2245035_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP022290.1_2245266_2247072_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP022290.1_2247752_2249291_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP022290.1_2249325_2251458_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP022290.1_2251469_2251904_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP022290.1_2251903_2253010_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_002786465.1_ASM278646v1	NZ_CP022290	Staphylococcus aureus subsp. aureus strain EDCC5458 chromosome, complete genome	9	2363874-2364067	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	12	2363897-2363929|2363897-2363929|2363897-2363929|2363897-2363929|2363897-2363929|2363953-2363988|2363953-2363988|2363953-2363988|2364012-2364044|2364012-2364044|2364012-2364044|2364012-2364044	NZ_CP022290.1_783438-783470|NZ_CP022290.1_1343431-1343399|NZ_CP022290.1_1432677-1432709|NZ_CP022290.1_2005163-2005195|NZ_CP022290.1_2639977-2640009|NZ_CP022290.1_1850309-1850274|NZ_CP022290.1_1671729-1671764|NZ_CP022290.1_2015966-2016001|NZ_CP022290.1_783438-783470|NZ_CP022290.1_1343431-1343399|NZ_CP022290.1_2005163-2005195|NZ_CP022290.1_2639977-2640009	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP022290.1_2354401_2354566_+,NA|106aa|up_8|NZ_CP022290.1_2354810_2355128_+,NA|84aa|up_5|NZ_CP022290.1_2360252_2360504_+,NA|57aa|up_0|NZ_CP022290.1_2363643_2363814_+,NA	NA|55aa|up_9|NZ_CP022290.1_2354401_2354566_+	NA	NA|106aa|up_8|NZ_CP022290.1_2354810_2355128_+	NA	NA|1056aa|up_7|NZ_CP022290.1_2355314_2358482_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP022290.1_2358598_2359864_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP022290.1_2360252_2360504_+	NA	NA|255aa|up_4|NZ_CP022290.1_2360495_2361260_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP022290.1_2361421_2361862_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP022290.1_2361854_2363066_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP022290.1_2363167_2363518_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP022290.1_2363643_2363814_+	NA	NA|341aa|down_0|NZ_CP022290.1_2364208_2365231_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP022290.1_2365250_2365850_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP022290.1_2365856_2366090_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP022290.1_2366095_2366542_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP022290.1_2366555_2367041_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP022290.1_2367037_2368297_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP022290.1_2368359_2368854_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP022290.1_2368855_2369362_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP022290.1_2369392_2370397_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP022290.1_2370566_2371172_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
