assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002787125.1_ASM278712v1	NZ_CP024843	Streptococcus iniae strain FP5228 chromosome, complete genome	1	1409684-1410511	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,DinG,csa3	Type II-A,Type II-B,Type II-C	GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC,GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC,GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	11,12,12	12	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,DinG,csa3	NA,NA|148aa|down_1|NZ_CP024843.1_1411078_1411522_-,NA|206aa|down_9|NZ_CP024843.1_1418842_1419460_+	NA|451aa|up_9|NZ_CP024843.1_1397706_1399059_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|219aa|up_8|NZ_CP024843.1_1399131_1399788_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|377aa|up_7|NZ_CP024843.1_1399830_1400961_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|245aa|up_6|NZ_CP024843.1_1400978_1401713_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|256aa|up_5|NZ_CP024843.1_1401722_1402490_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|214aa|up_4|NZ_CP024843.1_1402486_1403128_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_CP024843.1_1403612_1407719_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|NZ_CP024843.1_1407718_1408585_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|115aa|up_1|NZ_CP024843.1_1408581_1408926_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP024843.1_1408915_1409578_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|141aa|down_0|NZ_CP024843.1_1410607_1411030_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|148aa|down_1|NZ_CP024843.1_1411078_1411522_-	NA	NA|611aa|down_2|NZ_CP024843.1_1411709_1413542_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|148aa|down_3|NZ_CP024843.1_1413652_1414096_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|219aa|down_4|NZ_CP024843.1_1414098_1414755_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|155aa|down_5|NZ_CP024843.1_1414774_1415239_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|393aa|down_6|NZ_CP024843.1_1415424_1416603_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|282aa|down_7|NZ_CP024843.1_1416685_1417531_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|340aa|down_8|NZ_CP024843.1_1417639_1418659_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|206aa|down_9|NZ_CP024843.1_1418842_1419460_+	NA
GCF_002787125.1_ASM278712v1	NZ_CP024843	Streptococcus iniae strain FP5228 chromosome, complete genome	2	1770835-1770976	2	CRISPRCasFinder	no		cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,DinG,csa3	Orphan	GGCAAAGTTAACTCTTATTGTTTTAGCAATAAAACTATAAGAA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,DinG,csa3	NA,NA	NA|437aa|up_9|NZ_CP024843.1_1760351_1761662_-	pfam09913, DUF2142, Predicted membrane protein (DUF2142)	NA|327aa|up_8|NZ_CP024843.1_1761697_1762678_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|409aa|up_7|NZ_CP024843.1_1762670_1763897_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|422aa|up_6|NZ_CP024843.1_1763923_1765189_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|389aa|up_5|NZ_CP024843.1_1765208_1766375_-	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|269aa|up_4|NZ_CP024843.1_1766374_1767181_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|311aa|up_3|NZ_CP024843.1_1767183_1768116_-	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|385aa|up_2|NZ_CP024843.1_1768105_1769260_-	cd04955, GT4-like, glycosyltransferase family 4 proteins	NA|285aa|up_1|NZ_CP024843.1_1769377_1770232_-	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|113aa|up_0|NZ_CP024843.1_1770325_1770664_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|370aa|down_0|NZ_CP024843.1_1771039_1772149_-	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated	NA|604aa|down_1|NZ_CP024843.1_1772157_1773969_-	PRK05667, dnaG, DNA primase; Validated	NA|126aa|down_2|NZ_CP024843.1_1774097_1774475_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|59aa|down_3|NZ_CP024843.1_1774742_1774919_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|1216aa|down_4|NZ_CP024843.1_1775052_1778700_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1079aa|down_5|NZ_CP024843.1_1778696_1781933_-	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|308aa|down_6|NZ_CP024843.1_1782096_1783020_+	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase	NA|224aa|down_7|NZ_CP024843.1_1783050_1783722_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|357aa|down_8|NZ_CP024843.1_1783730_1784801_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|127aa|down_9|NZ_CP024843.1_1784803_1785184_-	pfam02566, OsmC, OsmC-like protein
