assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002804185.1_ASM280418v1	NZ_CP024954	Lactococcus lactis subsp. lactis strain F44 chromosome, complete genome	1	1416029-1416127	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG	Orphan	CTATGGATAAAATGCTCGCTTTGGTCGC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG	NA,NA	NA|383aa|up_9|NZ_CP024954.1_1406627_1407776_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|393aa|up_8|NZ_CP024954.1_1407948_1409127_-	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|209aa|up_7|NZ_CP024954.1_1409271_1409898_-	COG4915, XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only]	NA|342aa|up_6|NZ_CP024954.1_1410089_1411115_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|314aa|up_5|NZ_CP024954.1_1411157_1412099_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|136aa|up_4|NZ_CP024954.1_1412169_1412577_+	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|177aa|up_3|NZ_CP024954.1_1412573_1413104_+	COG4769, COG4769, Predicted membrane protein [Function unknown]	NA|320aa|up_2|NZ_CP024954.1_1413094_1414054_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|239aa|up_1|NZ_CP024954.1_1414050_1414767_+	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]	NA|238aa|up_0|NZ_CP024954.1_1415248_1415962_-	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|312aa|down_0|NZ_CP024954.1_1416182_1417118_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|263aa|down_1|NZ_CP024954.1_1417190_1417979_-	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase	NA|455aa|down_2|NZ_CP024954.1_1418309_1419674_-	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|239aa|down_3|NZ_CP024954.1_1419836_1420553_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|476aa|down_4|NZ_CP024954.1_1420624_1422052_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|185aa|down_5|NZ_CP024954.1_1422044_1422599_-	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|276aa|down_6|NZ_CP024954.1_1422595_1423423_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|304aa|down_7|NZ_CP024954.1_1423431_1424343_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|440aa|down_8|NZ_CP024954.1_1424416_1425736_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|309aa|down_9|NZ_CP024954.1_1425850_1426777_-	cd19606, GH113-like, Glycoside hydrolase family 113 beta-mannosidase and similar proteins
GCF_002804185.1_ASM280418v1	NZ_CP024954	Lactococcus lactis subsp. lactis strain F44 chromosome, complete genome	2	1647647-1648672	1,1	CRT,PILER-CR	no		cas3,DEDDh,csa3,DinG	Orphan	ATCNGANATTGAATCNGA,TTGAATCAGACATTGAATCAGATATTGAATCGGACGTTGAATCAGACGTTG	18,51	0	0	NA	NA	NA:NA	14,2	14	Orphan	cas3,DEDDh,csa3,DinG	NA,NA|69aa|down_8|NZ_CP024954.1_1659862_1660069_-	NA|320aa|up_9|NZ_CP024954.1_1636285_1637245_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|276aa|up_8|NZ_CP024954.1_1637309_1638137_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|315aa|up_7|NZ_CP024954.1_1638277_1639222_-	COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]	NA|80aa|up_6|NZ_CP024954.1_1639483_1639723_-	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only]	NA|91aa|up_5|NZ_CP024954.1_1639818_1640091_-	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|411aa|up_4|NZ_CP024954.1_1640179_1641412_-	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|380aa|up_3|NZ_CP024954.1_1641492_1642632_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|385aa|up_2|NZ_CP024954.1_1642940_1644095_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|236aa|up_1|NZ_CP024954.1_1644154_1644862_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|320aa|up_0|NZ_CP024954.1_1645013_1645973_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|170aa|down_0|NZ_CP024954.1_1649595_1650105_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|281aa|down_1|NZ_CP024954.1_1650130_1650973_-	PRK09814, PRK09814, sugar transferase	NA|360aa|down_2|NZ_CP024954.1_1651193_1652273_-	PRK09814, PRK09814, sugar transferase	NA|267aa|down_3|NZ_CP024954.1_1652253_1653054_-	pfam15432, Sec-ASP3, Accessory Sec secretory system ASP3	NA|539aa|down_4|NZ_CP024954.1_1653043_1654660_-	pfam16929, Asp2, Accessory Sec system GspB-transporter	NA|528aa|down_5|NZ_CP024954.1_1654638_1656222_-	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1	NA|409aa|down_6|NZ_CP024954.1_1656221_1657448_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|790aa|down_7|NZ_CP024954.1_1657471_1659841_-	PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed	NA|69aa|down_8|NZ_CP024954.1_1659862_1660069_-	NA	NA|440aa|down_9|NZ_CP024954.1_1660114_1661434_-	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB
GCF_002804185.1_ASM280418v1	NZ_CP024954	Lactococcus lactis subsp. lactis strain F44 chromosome, complete genome	3	1894925-1895019	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG	Orphan	TTTATTACTGACAGACTTGTCAGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG	NA|121aa|up_4|NZ_CP024954.1_1891109_1891472_+,NA|98aa|up_3|NZ_CP024954.1_1891446_1891740_+,NA	NA|102aa|up_9|NZ_CP024954.1_1886732_1887038_-	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown]	NA|324aa|up_8|NZ_CP024954.1_1887054_1888026_-	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|190aa|up_7|NZ_CP024954.1_1888031_1888601_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|414aa|up_6|NZ_CP024954.1_1888745_1889987_+	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|383aa|up_5|NZ_CP024954.1_1889976_1891125_+	TIGR01930, 3-ketoacyl-CoA_thiolase, acetyl-CoA acetyltransferases	NA|121aa|up_4|NZ_CP024954.1_1891109_1891472_+	NA	NA|98aa|up_3|NZ_CP024954.1_1891446_1891740_+	NA	NA|249aa|up_2|NZ_CP024954.1_1891736_1892483_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|282aa|up_1|NZ_CP024954.1_1892505_1893351_+	TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II	NA|471aa|up_0|NZ_CP024954.1_1893491_1894904_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|153aa|down_0|NZ_CP024954.1_1895137_1895596_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|161aa|down_1|NZ_CP024954.1_1895711_1896194_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|406aa|down_2|NZ_CP024954.1_1896195_1897413_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|419aa|down_3|NZ_CP024954.1_1897412_1898669_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|257aa|down_4|NZ_CP024954.1_1898806_1899577_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|444aa|down_5|NZ_CP024954.1_1899751_1901083_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|234aa|down_6|NZ_CP024954.1_1901085_1901787_-	COG4862, MecA, Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]	NA|245aa|down_7|NZ_CP024954.1_1901916_1902651_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|229aa|down_8|NZ_CP024954.1_1902650_1903337_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|303aa|down_9|NZ_CP024954.1_1903483_1904392_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
GCF_002804185.1_ASM280418v1	NZ_CP024954	Lactococcus lactis subsp. lactis strain F44 chromosome, complete genome	4	1915607-1915703	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG	Orphan	GAAGAGTTTTACGAAACTTTGATGTT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG	NA,NA|87aa|down_3|NZ_CP024954.1_1919598_1919859_-	NA|257aa|up_9|NZ_CP024954.1_1898806_1899577_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|444aa|up_8|NZ_CP024954.1_1899751_1901083_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|234aa|up_7|NZ_CP024954.1_1901085_1901787_-	COG4862, MecA, Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]	NA|245aa|up_6|NZ_CP024954.1_1901916_1902651_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|229aa|up_5|NZ_CP024954.1_1902650_1903337_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|303aa|up_4|NZ_CP024954.1_1903483_1904392_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|1199aa|up_3|NZ_CP024954.1_1904536_1908133_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1197aa|up_2|NZ_CP024954.1_1908268_1911859_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|203aa|up_1|NZ_CP024954.1_1912124_1912733_-	COG4465, CodY, Pleiotropic transcriptional repressor [Transcription]	NA|225aa|up_0|NZ_CP024954.1_1912966_1913641_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|102aa|down_0|NZ_CP024954.1_1915811_1916117_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|558aa|down_1|NZ_CP024954.1_1916185_1917859_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|484aa|down_2|NZ_CP024954.1_1918068_1919520_+	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|87aa|down_3|NZ_CP024954.1_1919598_1919859_-	NA	NA|341aa|down_4|NZ_CP024954.1_1919879_1920902_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|593aa|down_5|NZ_CP024954.1_1921097_1922876_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|509aa|down_6|NZ_CP024954.1_1922911_1924438_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|414aa|down_7|NZ_CP024954.1_1924717_1925959_-	TIGR01882, Peptidase_T, peptidase T	NA|266aa|down_8|NZ_CP024954.1_1925987_1926785_-	pfam08820, DUF1803, Domain of unknown function (DUF1803)	NA|315aa|down_9|NZ_CP024954.1_1926784_1927729_-	PRK05427, PRK05427, putative manganese-dependent inorganic pyrophosphatase; Provisional
