assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	1	636634-636773	1	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA,NA	NA|336aa|up_9|NZ_CP027205.1_629099_630107_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|NZ_CP027205.1_630312_631191_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|NZ_CP027205.1_631199_632195_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|NZ_CP027205.1_632403_632928_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|NZ_CP027205.1_632921_633425_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|NZ_CP027205.1_633411_633714_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|NZ_CP027205.1_633764_634208_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|NZ_CP027205.1_634187_634706_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|NZ_CP027205.1_634833_635469_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|NZ_CP027205.1_635541_636582_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|NZ_CP027205.1_636786_637362_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|NZ_CP027205.1_637371_637962_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|NZ_CP027205.1_637981_638377_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|NZ_CP027205.1_638334_640371_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|NZ_CP027205.1_640435_641296_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|NZ_CP027205.1_641338_642430_-	pfam00419, Fimbrial, Fimbrial protein	NA|791aa|down_6|NZ_CP027205.1_642440_644813_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|252aa|down_7|NZ_CP027205.1_645962_646718_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|264aa|down_8|NZ_CP027205.1_646718_647510_-	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID	NA|268aa|down_9|NZ_CP027205.1_647499_648303_-	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	2	665028-665279	1	PILER-CR	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	TTTTGGAGGAGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA|101aa|up_8|NZ_CP027205.1_656392_656695_-,NA|180aa|down_1|NZ_CP027205.1_666786_667326_-	NA|427aa|up_9|NZ_CP027205.1_655098_656379_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|101aa|up_8|NZ_CP027205.1_656392_656695_-	NA	NA|270aa|up_7|NZ_CP027205.1_656627_657437_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP027205.1_657491_657956_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP027205.1_657955_658291_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP027205.1_658439_660011_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|NZ_CP027205.1_660385_661720_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP027205.1_661735_662506_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP027205.1_662535_663426_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP027205.1_663522_664668_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP027205.1_665577_666765_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP027205.1_666786_667326_-	NA	NA|115aa|down_2|NZ_CP027205.1_667581_667926_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP027205.1_668114_669053_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP027205.1_669151_670141_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP027205.1_670162_671494_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP027205.1_671519_672728_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP027205.1_672761_675056_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP027205.1_675069_675459_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP027205.1_675530_676895_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	3	679860-679977	2	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA,NA|55aa|down_0|NZ_CP027205.1_680050_680215_-	NA|115aa|up_9|NZ_CP027205.1_667581_667926_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP027205.1_668114_669053_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP027205.1_669151_670141_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP027205.1_670162_671494_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP027205.1_671519_672728_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP027205.1_672761_675056_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP027205.1_675069_675459_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP027205.1_675530_676895_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP027205.1_677169_678501_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP027205.1_678528_679839_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP027205.1_680050_680215_-	NA	NA|234aa|down_1|NZ_CP027205.1_680237_680939_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP027205.1_681043_681940_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP027205.1_681990_682347_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP027205.1_682588_682954_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP027205.1_683246_684233_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP027205.1_684302_684785_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP027205.1_684880_685180_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP027205.1_685169_685574_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP027205.1_685576_685882_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	4	1053310-1053826	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA|47aa|up_1|NZ_CP027205.1_1052019_1052160_-,NA	NA|434aa|up_9|NZ_CP027205.1_1042716_1044018_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP027205.1_1044065_1046300_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP027205.1_1046377_1046626_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP027205.1_1046625_1046961_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP027205.1_1047031_1047823_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP027205.1_1048050_1049688_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP027205.1_1049775_1051074_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP027205.1_1051133_1052006_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP027205.1_1052019_1052160_-	NA	NA|224aa|up_0|NZ_CP027205.1_1052298_1052970_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP027205.1_1054463_1055942_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP027205.1_1055968_1057246_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP027205.1_1057564_1058350_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP027205.1_1058419_1059874_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP027205.1_1059967_1061305_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP027205.1_1061282_1062062_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP027205.1_1062058_1062919_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP027205.1_1063066_1063642_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP027205.1_1063658_1063919_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP027205.1_1063909_1065181_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	5	1076212-1076545	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA,NA	NA|424aa|up_9|NZ_CP027205.1_1063909_1065181_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|NZ_CP027205.1_1065258_1065624_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP027205.1_1065939_1067739_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP027205.1_1067738_1069451_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP027205.1_1069524_1070259_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP027205.1_1070523_1070676_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|NZ_CP027205.1_1073526_1074273_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP027205.1_1074254_1074905_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP027205.1_1074901_1075825_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP027205.1_1075821_1076115_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP027205.1_1076626_1077664_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP027205.1_1077915_1078824_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP027205.1_1078825_1080253_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP027205.1_1080252_1080858_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP027205.1_1080907_1081231_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP027205.1_1081424_1081736_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP027205.1_1081754_1082465_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP027205.1_1082464_1082944_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP027205.1_1082940_1083990_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP027205.1_1083970_1084732_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	6	1622376-1622493	5	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA|105aa|up_5|NZ_CP027205.1_1617450_1617765_-,NA|286aa|up_4|NZ_CP027205.1_1618446_1619304_-,NA	NA|420aa|up_9|NZ_CP027205.1_1611642_1612902_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_8|NZ_CP027205.1_1612891_1614520_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_7|NZ_CP027205.1_1614792_1616151_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_6|NZ_CP027205.1_1616155_1617232_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_5|NZ_CP027205.1_1617450_1617765_-	NA	NA|286aa|up_4|NZ_CP027205.1_1618446_1619304_-	NA	NA|69aa|up_3|NZ_CP027205.1_1619769_1619976_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|NZ_CP027205.1_1620190_1620841_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP027205.1_1620894_1621149_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP027205.1_1621148_1622279_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP027205.1_1622512_1624798_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP027205.1_1625493_1629246_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP027205.1_1629373_1630096_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP027205.1_1630242_1632870_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP027205.1_1633018_1634707_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP027205.1_1634703_1635327_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1535aa|down_6|NZ_CP027205.1_1635260_1639865_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP027205.1_1639865_1641515_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP027205.1_1641519_1642296_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP027205.1_1642369_1643554_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	7	2228356-2228479	6	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA,NA|75aa|down_7|NZ_CP027205.1_2237064_2237289_-,NA|30aa|down_8|NZ_CP027205.1_2237375_2237465_+	NA|471aa|up_9|NZ_CP027205.1_2217810_2219223_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027205.1_2219778_2219988_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027205.1_2220443_2221070_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027205.1_2221090_2223193_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP027205.1_2223196_2223844_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027205.1_2223907_2224576_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027205.1_2224572_2225358_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027205.1_2225361_2226174_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027205.1_2226185_2227790_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027205.1_2227915_2228221_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027205.1_2228793_2230050_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027205.1_2230090_2231464_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027205.1_2231678_2232320_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027205.1_2232359_2233508_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027205.1_2233798_2235010_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027205.1_2235122_2236055_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027205.1_2236051_2237077_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|NZ_CP027205.1_2237064_2237289_-	NA	NA|30aa|down_8|NZ_CP027205.1_2237375_2237465_+	NA	NA|390aa|down_9|NZ_CP027205.1_2237630_2238800_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	8	2949313-2949404	7	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA,NA	NA|503aa|up_9|NZ_CP027205.1_2936897_2938406_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP027205.1_2938827_2942790_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027205.1_2942829_2943468_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|383aa|up_6|NZ_CP027205.1_2943698_2944847_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027205.1_2944846_2945539_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027205.1_2945550_2945937_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027205.1_2945944_2946745_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027205.1_2946754_2947345_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027205.1_2947355_2947850_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027205.1_2947870_2949199_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP027205.1_2949827_2950424_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP027205.1_2950444_2950672_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP027205.1_2950709_2951951_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP027205.1_2952242_2953502_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP027205.1_2953761_2954682_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP027205.1_2954681_2954987_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP027205.1_2955079_2955679_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP027205.1_2955675_2958222_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP027205.1_2958221_2959394_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP027205.1_2959523_2960216_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	9	3255480-3255624	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA|94aa|up_8|NZ_CP027205.1_3250865_3251147_+,NA|177aa|up_6|NZ_CP027205.1_3251677_3252208_-,NA|84aa|up_5|NZ_CP027205.1_3252098_3252350_-,NA|62aa|up_4|NZ_CP027205.1_3252404_3252590_-,NA|56aa|up_3|NZ_CP027205.1_3252522_3252690_+,NA|70aa|down_9|NZ_CP027205.1_3266344_3266554_-	NA|64aa|up_9|NZ_CP027205.1_3250663_3250855_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_8|NZ_CP027205.1_3250865_3251147_+	NA	NA|74aa|up_7|NZ_CP027205.1_3251245_3251467_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|177aa|up_6|NZ_CP027205.1_3251677_3252208_-	NA	NA|84aa|up_5|NZ_CP027205.1_3252098_3252350_-	NA	NA|62aa|up_4|NZ_CP027205.1_3252404_3252590_-	NA	NA|56aa|up_3|NZ_CP027205.1_3252522_3252690_+	NA	NA|73aa|up_2|NZ_CP027205.1_3252729_3252948_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP027205.1_3252925_3253996_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP027205.1_3254130_3255414_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP027205.1_3255647_3257909_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP027205.1_3258091_3259525_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP027205.1_3259600_3260653_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP027205.1_3260836_3261790_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP027205.1_3261830_3262826_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP027205.1_3262980_3263799_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP027205.1_3263799_3264858_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP027205.1_3264860_3265550_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP027205.1_3265549_3266323_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|70aa|down_9|NZ_CP027205.1_3266344_3266554_-	NA
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	10	3766294-3766447	9	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA|76aa|up_4|NZ_CP027205.1_3761794_3762022_+,NA|150aa|down_8|NZ_CP027205.1_3776024_3776474_-	NA|134aa|up_9|NZ_CP027205.1_3757213_3757615_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_8|NZ_CP027205.1_3757672_3758917_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_7|NZ_CP027205.1_3759008_3759467_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_6|NZ_CP027205.1_3759727_3761185_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_5|NZ_CP027205.1_3761541_3761808_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|76aa|up_4|NZ_CP027205.1_3761794_3762022_+	NA	NA|151aa|up_3|NZ_CP027205.1_3762114_3762567_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|NZ_CP027205.1_3762563_3763619_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|263aa|up_1|NZ_CP027205.1_3763689_3764478_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP027205.1_3764419_3766159_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP027205.1_3766476_3766974_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|NZ_CP027205.1_3767149_3767908_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|NZ_CP027205.1_3768199_3768940_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|NZ_CP027205.1_3768910_3769678_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|NZ_CP027205.1_3769883_3770462_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|NZ_CP027205.1_3770701_3773146_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|NZ_CP027205.1_3773188_3773662_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|NZ_CP027205.1_3773815_3774586_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|NZ_CP027205.1_3776024_3776474_-	NA	NA|1020aa|down_9|NZ_CP027205.1_3776485_3779545_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]
GCF_002811555.2_ASM281155v2	NZ_CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	11	3979739-3979871	4	PILER-CR	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	NA,NA|73aa|down_7|NZ_CP027205.1_3987820_3988039_+	NA|126aa|up_9|NZ_CP027205.1_3970443_3970821_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP027205.1_3970827_3971670_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP027205.1_3971747_3972227_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP027205.1_3972418_3974281_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP027205.1_3974273_3974804_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP027205.1_3974911_3976243_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP027205.1_3976300_3976588_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP027205.1_3976584_3977871_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP027205.1_3977921_3978863_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP027205.1_3978877_3979648_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP027205.1_3980121_3981636_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP027205.1_3981666_3982809_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP027205.1_3982937_3984155_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP027205.1_3984228_3985782_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP027205.1_3985890_3986676_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP027205.1_3986681_3987272_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP027205.1_3987390_3987786_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|NZ_CP027205.1_3987820_3988039_+	NA	NA|1074aa|down_8|NZ_CP027205.1_3988046_3991268_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|NZ_CP027205.1_3991285_3992434_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
