assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002812465.1_ASM281246v1	NZ_CP025029	Streptococcus agalactiae strain SGEHI2015-25 chromosome, complete genome	1	509612-510304	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL	 Type I-U?,Type I-U,Type I-C	GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT,GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT,GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	7,9,10	10	TypeI-U?,TypeI-U,TypeI-C	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL	NA|231aa|up_9|NZ_CP025029.1_496059_496752_+,NA|260aa|up_7|NZ_CP025029.1_499642_500422_-,NA|97aa|down_6|NZ_CP025029.1_515967_516258_+	NA|231aa|up_9|NZ_CP025029.1_496059_496752_+	NA	NA|884aa|up_8|NZ_CP025029.1_496773_499425_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|260aa|up_7|NZ_CP025029.1_499642_500422_-	NA	cas3|808aa|up_6|NZ_CP025029.1_501433_503857_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|NZ_CP025029.1_503989_504718_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|NZ_CP025029.1_504717_506613_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|NZ_CP025029.1_506617_507466_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|224aa|up_2|NZ_CP025029.1_507467_508139_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_CP025029.1_508135_509161_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP025029.1_509171_509465_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|320aa|down_0|NZ_CP025029.1_510440_511400_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|301aa|down_1|NZ_CP025029.1_511560_512463_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|355aa|down_2|NZ_CP025029.1_512622_513687_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|331aa|down_3|NZ_CP025029.1_513799_514792_+	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism]	NA|150aa|down_4|NZ_CP025029.1_514836_515286_-	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative	NA|235aa|down_5|NZ_CP025029.1_515251_515956_+	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|97aa|down_6|NZ_CP025029.1_515967_516258_+	NA	NA|162aa|down_7|NZ_CP025029.1_516254_516740_+	cd02163, PPAT, Phosphopantetheine adenylyltransferase	NA|358aa|down_8|NZ_CP025029.1_516729_517803_+	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]	NA|445aa|down_9|NZ_CP025029.1_517877_519212_+	cd00845, MPP_UshA_N_like, Escherichia coli UshA-like family, N-terminal metallophosphatase domain
GCF_002812465.1_ASM281246v1	NZ_CP025029	Streptococcus agalactiae strain SGEHI2015-25 chromosome, complete genome	2	911831-912460	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL	Type II-A,Type II-C,Type II-B	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	8,8,9	9	TypeII-A,TypeII-C,TypeII-B	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL	NA,NA|261aa|down_9|NZ_CP025029.1_926066_926849_-	NA|124aa|up_9|NZ_CP025029.1_901212_901584_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|127aa|up_8|NZ_CP025029.1_901608_901989_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|377aa|up_7|NZ_CP025029.1_902080_903211_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|246aa|up_6|NZ_CP025029.1_903214_903952_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|257aa|up_5|NZ_CP025029.1_903952_904723_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|219aa|up_4|NZ_CP025029.1_904712_905369_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1371aa|up_3|NZ_CP025029.1_905756_909869_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|290aa|up_2|NZ_CP025029.1_909870_910740_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|114aa|up_1|NZ_CP025029.1_910736_911078_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP025029.1_911064_911730_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|139aa|down_0|NZ_CP025029.1_913017_913434_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|611aa|down_1|NZ_CP025029.1_913569_915402_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|878aa|down_2|NZ_CP025029.1_915648_918282_+	NF033189, internalin_A, class 1 internalin InlA	NA|220aa|down_3|NZ_CP025029.1_918381_919041_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|155aa|down_4|NZ_CP025029.1_919049_919514_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_5|NZ_CP025029.1_919513_919903_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|368aa|down_6|NZ_CP025029.1_922845_923949_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|213aa|down_7|NZ_CP025029.1_924069_924708_-	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|204aa|down_8|NZ_CP025029.1_925418_926030_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|261aa|down_9|NZ_CP025029.1_926066_926849_-	NA
GCF_002812465.1_ASM281246v1	NZ_CP025029	Streptococcus agalactiae strain SGEHI2015-25 chromosome, complete genome	3	1901819-1902316	3	CRT	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL	Orphan	TCTGGTTTGGCNTCTGGN	18	0	0	NA	NA	NA	8	8	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL	NA|203aa|up_4|NZ_CP025029.1_1894179_1894788_+,NA	NA|746aa|up_9|NZ_CP025029.1_1883185_1885423_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|108aa|up_8|NZ_CP025029.1_1885792_1886116_-	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|231aa|up_7|NZ_CP025029.1_1886105_1886798_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|1554aa|up_6|NZ_CP025029.1_1887120_1891782_+	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|463aa|up_5|NZ_CP025029.1_1892698_1894087_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|203aa|up_4|NZ_CP025029.1_1894179_1894788_+	NA	NA|834aa|up_3|NZ_CP025029.1_1894877_1897379_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|416aa|up_2|NZ_CP025029.1_1897755_1899003_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|269aa|up_1|NZ_CP025029.1_1899660_1900466_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|180aa|up_0|NZ_CP025029.1_1900889_1901429_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|58aa|down_0|NZ_CP025029.1_1904420_1904594_-	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion]	NA|51aa|down_1|NZ_CP025029.1_1904629_1904782_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|774aa|down_2|NZ_CP025029.1_1904830_1907152_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|295aa|down_3|NZ_CP025029.1_1907195_1908080_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|547aa|down_4|NZ_CP025029.1_1908104_1909745_-	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|404aa|down_5|NZ_CP025029.1_1909914_1911126_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|224aa|down_6|NZ_CP025029.1_1911192_1911864_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|401aa|down_7|NZ_CP025029.1_1911893_1913096_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|down_8|NZ_CP025029.1_1913116_1913896_-	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|246aa|down_9|NZ_CP025029.1_1914054_1914792_+	COG2188, PhnF, Transcriptional regulators [Transcription]
GCF_002812465.1_ASM281246v1	NZ_CP025029	Streptococcus agalactiae strain SGEHI2015-25 chromosome, complete genome	4	1951870-1951956	3	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL	Orphan	AGCAGTATCGTACTTAGTTTGAGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas9,csn2,csm6,DEDDh,WYL	NA|154aa|up_0|NZ_CP025029.1_1950524_1950986_-,NA|319aa|down_1|NZ_CP025029.1_1954375_1955332_-,NA|98aa|down_2|NZ_CP025029.1_1955566_1955860_+,NA|147aa|down_3|NZ_CP025029.1_1955941_1956382_+,NA|177aa|down_4|NZ_CP025029.1_1956378_1956909_+,NA|424aa|down_6|NZ_CP025029.1_1957818_1959090_+,NA|88aa|down_7|NZ_CP025029.1_1959172_1959436_+	NA|146aa|up_9|NZ_CP025029.1_1941865_1942303_-	TIGR01529, Arginine_repressor	NA|564aa|up_8|NZ_CP025029.1_1942524_1944216_+	PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed	NA|103aa|up_7|NZ_CP025029.1_1944303_1944612_+	pfam08951, EntA_Immun, Enterocin A Immunity	NA|291aa|up_6|NZ_CP025029.1_1944638_1945511_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|315aa|up_5|NZ_CP025029.1_1945618_1946563_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|584aa|up_4|NZ_CP025029.1_1946552_1948304_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|427aa|up_3|NZ_CP025029.1_1948396_1949677_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|61aa|up_2|NZ_CP025029.1_1949896_1950079_+	PRK01110, rpmF, 50S ribosomal protein L32; Validated	NA|50aa|up_1|NZ_CP025029.1_1950094_1950244_+	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|154aa|up_0|NZ_CP025029.1_1950524_1950986_-	NA	NA|112aa|down_0|NZ_CP025029.1_1954003_1954339_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|319aa|down_1|NZ_CP025029.1_1954375_1955332_-	NA	NA|98aa|down_2|NZ_CP025029.1_1955566_1955860_+	NA	NA|147aa|down_3|NZ_CP025029.1_1955941_1956382_+	NA	NA|177aa|down_4|NZ_CP025029.1_1956378_1956909_+	NA	NA|249aa|down_5|NZ_CP025029.1_1956908_1957655_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|424aa|down_6|NZ_CP025029.1_1957818_1959090_+	NA	NA|88aa|down_7|NZ_CP025029.1_1959172_1959436_+	NA	NA|422aa|down_8|NZ_CP025029.1_1959532_1960798_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|224aa|down_9|NZ_CP025029.1_1961170_1961842_+	COG3212, COG3212, Predicted membrane protein [Function unknown]
